Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 5.6e-179 630.9 316 100.0
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 2.6e-168 595.5 348 88.5
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 3.2e-158 562.0 314 90.4
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 3.8e-151 538.5 316 85.4
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 2.7e-149 532.3 308 85.7
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 3.9e-148 528.5 316 83.9
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 5.2e-148 528.1 316 82.9
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 2.0e-147 526.2 316 83.5
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 1.4e-145 520.0 311 84.6
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 1.4e-145 520.0 317 81.4
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 1.8e-145 519.6 318 82.4
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 1.8e-145 519.6 306 84.0
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 3.1e-145 518.8 303 85.1
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 5.3e-145 518.1 315 81.9
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 1.2e-144 516.9 315 83.2
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 1.6e-144 516.5 314 81.8
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 1.0e-143 513.8 320 81.6
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 1.7e-143 513.1 309 83.8
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 1.7e-143 513.1 302 84.4
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 3.8e-143 511.9 311 83.0
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 5.0e-143 511.5 303 84.2
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 5.0e-143 511.5 315 80.3
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 6.5e-143 511.1 303 83.5
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 6.5e-143 511.1 320 81.6
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 8.5e-143 510.8 319 80.3
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 1.1e-142 510.4 314 79.0
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 4.2e-142 508.4 315 81.6
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 1.2e-141 506.9 318 79.6
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 1.6e-141 506.5 317 80.8
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 1.6e-141 506.5 314 77.7
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 2.1e-141 506.1 317 80.8
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 2.7e-141 505.8 303 83.2
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 2.7e-141 505.8 312 82.1
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 2.7e-141 505.8 308 81.8
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 3.6e-141 505.4 319 79.6
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 3.6e-141 505.4 306 82.7
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 3.6e-141 505.4 327 78.9
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 3.6e-141 505.4 312 80.4
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 6.1e-141 504.6 317 80.1
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 8.0e-141 504.2 309 81.6
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 8.0e-141 504.2 315 81.0
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 1.4e-140 503.4 319 79.3
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 1.4e-140 503.4 314 82.8
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 5.2e-140 501.5 317 80.1
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 6.7e-140 501.1 318 79.9
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 8.8e-140 500.7 320 78.1
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 1.2e-139 500.4 318 79.2
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 2.0e-139 499.6 303 82.2
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 4.4e-139 498.4 357 72.8
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 7.5e-139 497.7 318 78.9
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.8e-138 495.7 318 78.9
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 4.8e-138 495.0 302 83.8
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 6.3e-138 494.6 319 77.4
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 8.2e-138 494.2 327 75.8
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 4.5e-136 488.4 323 76.2
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 7.7e-136 487.6 315 78.4
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 1.0e-135 487.3 320 78.4
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 1.7e-135 486.5 310 79.7
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.2e-135 486.1 311 78.1
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 2.5e-134 482.6 310 79.0
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 4.2e-134 481.9 310 78.7
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 7.2e-134 481.1 300 82.3
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 9.4e-134 480.7 312 77.9
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 1.2e-133 480.3 311 78.5
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 3.6e-133 478.8 311 79.1
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 2.3e-132 476.1 298 79.9
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 2.3e-132 476.1 310 77.7
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 1.5e-131 473.4 323 75.9
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 1.5e-131 473.4 326 76.1
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 1.5e-131 473.4 323 75.9
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 1.5e-131 473.4 323 75.9
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 7.5e-131 471.1 305 76.1
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 1.3e-130 470.3 317 75.7
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 1.7e-130 469.9 327 75.5
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 2.2e-130 469.5 318 74.8
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 2.2e-130 469.5 318 74.8
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 2.2e-130 469.5 318 74.8
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 2.2e-130 469.5 318 74.8
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 2.2e-130 469.5 318 74.8
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 2.4e-129 466.1 296 78.4
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 7.0e-129 464.5 315 74.9
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 9.1e-129 464.2 314 75.2
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 1.6e-128 463.4 314 74.5
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 2.0e-128 463.0 313 75.1
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 2.7e-128 462.6 322 73.3
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 5.9e-128 461.5 307 78.5
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 2.9e-127 459.1 303 75.6
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 6.5e-127 458.0 301 75.4
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 1.9e-126 456.4 314 74.5
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 2.5e-126 456.1 319 74.0
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 3.2e-126 455.7 314 74.5
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 3.2e-126 455.7 310 76.8
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 4.7e-125 451.8 325 70.2
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 6.1e-125 451.4 319 72.7
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 1.4e-124 450.3 317 71.9
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 1.8e-124 449.9 333 70.9
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 8.8e-124 447.6 302 73.8
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 1.2e-123 447.2 306 74.2
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 2.6e-123 446.0 320 70.0
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 2.6e-123 446.0 320 70.0
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 3.7e-122 442.2 325 68.9
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 1.4e-121 440.3 260 84.6
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 5.4e-121 438.3 325 68.3
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 7.0e-121 438.0 313 71.9
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.0e-119 434.1 315 69.8
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 1.4e-116 423.7 269 78.4
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 3.7e-114 415.6 301 70.8
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 6.6e-111 404.8 321 68.2
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 8.9e-108 394.4 297 70.4
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 5.0e-103 378.6 304 61.2
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 4.3e-102 375.6 284 64.1
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 5.6e-102 375.2 257 74.7
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 5.6e-102 375.2 230 81.3
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 1.2e-101 374.0 231 81.0
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.6e-101 373.6 308 65.9
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 8.1e-101 371.3 306 61.1
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 1.1e-100 370.9 228 82.9
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 2.0e-99 366.7 295 65.1
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 2.9e-98 362.8 304 61.2
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 3.7e-98 362.5 301 60.5
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.4e-97 360.5 278 71.6
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 9.2e-97 357.8 301 57.8
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 8.6e-95 351.3 218 80.3
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 1.3e-82 310.8 254 59.4
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 3.5e-80 302.8 242 67.8
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 8.4e-74 281.6 309 45.6
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 5.1e-71 272.3 308 46.4
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 4.0e-68 262.7 149 84.6
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 6.9e-68 261.9 316 49.4
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.5e-67 260.8 165 80.6
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 2.0e-51 207.2 225 45.3
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 9.3e-49 198.4 156 66.0
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 6.3e-45 185.7 112 83.0
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 1.4e-39 167.9 291 36.8
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 5.1e-39 166.0 396 32.3
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.3e-34 151.4 94 77.7
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.8e-34 149.8 94 76.6
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.8e-34 149.8 193 47.2
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.8e-34 149.8 94 76.6
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 4.7e-32 142.9 114 70.2
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 1.4e-31 141.4 95 78.9
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 1.8e-31 141.0 111 65.8
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.2e-26 124.0 82 74.4
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.4e-20 104.0 71 73.2
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 5.3e-20 102.8 66 75.8
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 2.5e-17 94.0 53 84.9
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 4.0e-15 86.7 55 76.4
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 8.8e-15 85.5 49 81.6
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 1.7e-13 81.3 48 79.2
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 1.7e-13 81.3 48 79.2
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.8e-13 80.5 57 68.4
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.1e-08 64.3 85 43.5


User provided reference genes

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