Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 6.8e-249 863.6 460 100.0
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.4e-241 839.3 469 95.5
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 1.1e-201 706.8 471 80.5
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 4.1e-201 704.9 473 82.0
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 7.6e-200 700.7 476 79.0
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 2.0e-187 659.4 467 76.4
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 2.0e-176 622.9 483 68.5
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 3.2e-174 615.5 483 68.1
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 7.2e-174 614.4 471 67.9
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 9.4e-174 614.0 482 67.0
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 1.2e-173 613.6 448 75.9
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 2.7e-173 612.5 484 66.3
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 4.7e-173 611.7 487 67.1
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 3.0e-172 609.0 482 69.1
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 4.4e-171 605.1 484 66.9
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 5.7e-171 604.7 486 67.3
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.7e-170 603.2 488 64.8
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 3.7e-170 602.1 484 66.5
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 4.8e-170 601.7 483 69.2
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 4.8e-170 601.7 481 67.2
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 6.3e-170 601.3 476 68.9
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.8e-169 599.7 479 67.0
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 1.8e-169 599.7 479 66.6
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 4.1e-169 598.6 479 67.0
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 7.0e-169 597.8 480 67.3
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.0e-169 597.8 478 66.9
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 1.2e-168 597.0 502 64.9
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 1.2e-168 597.0 481 66.9
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 2.7e-168 595.9 472 66.5
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 2.7e-168 595.9 488 64.1
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 2.7e-168 595.9 479 65.1
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 2.7e-168 595.9 484 65.7
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.5e-168 595.5 491 66.4
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.5e-168 595.5 488 64.8
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 4.5e-168 595.1 536 62.7
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 5.9e-168 594.7 473 67.2
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 1.3e-167 593.6 485 64.7
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 2.2e-167 592.8 503 64.4
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 2.2e-167 592.8 472 66.3
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 2.9e-167 592.4 472 67.2
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 2.9e-167 592.4 481 64.9
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 2.9e-167 592.4 485 64.3
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 1.5e-166 590.1 480 65.4
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 1.9e-166 589.7 478 65.5
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 1.9e-166 589.7 495 64.0
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 3.2e-166 589.0 498 63.7
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 4.2e-166 588.6 494 65.6
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.2e-165 587.0 483 68.5
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 4.7e-165 585.1 512 61.9
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.1e-165 584.7 470 65.1
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 8.0e-165 584.3 472 67.8
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 1.0e-164 583.9 470 64.9
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 1.0e-164 583.9 478 65.1
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 1.4e-164 583.6 472 66.1
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 4.0e-164 582.0 498 64.3
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 6.8e-164 581.3 498 64.3
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 6.8e-164 581.3 493 64.7
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 8.8e-164 580.9 473 64.9
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 8.8e-164 580.9 478 66.1
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 8.8e-164 580.9 478 66.1
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 8.8e-164 580.9 485 63.9
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 1.5e-163 580.1 480 63.8
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 1.5e-163 580.1 480 63.8
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 2.6e-163 579.3 472 67.2
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 3.4e-163 578.9 482 65.4
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.7e-163 578.2 473 64.9
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 5.7e-163 578.2 484 63.8
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 5.7e-163 578.2 526 60.8
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 9.8e-163 577.4 478 65.7
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 1.7e-162 576.6 462 66.0
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 2.2e-162 576.2 489 64.4
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 2.2e-162 576.2 478 65.5
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 2.8e-162 575.9 482 66.0
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 3.7e-162 575.5 516 63.0
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 4.8e-162 575.1 474 67.3
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 6.3e-162 574.7 482 64.1
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 1.1e-161 573.9 476 63.0
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 1.1e-161 573.9 478 64.6
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 1.4e-161 573.5 476 66.8
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 1.8e-161 573.2 395 74.7
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 3.1e-161 572.4 481 66.1
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 7.0e-161 571.2 516 62.6
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 2.7e-160 569.3 472 67.8
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 3.5e-160 568.9 472 65.7
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 4.5e-160 568.5 474 67.3
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 1.0e-159 567.4 474 65.6
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 1.7e-159 566.6 486 64.8
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.9e-159 565.8 464 64.4
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 1.6e-157 560.1 480 64.6
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 2.7e-157 559.3 478 62.6
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 3.6e-157 558.9 473 68.7
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 8.0e-157 557.8 462 64.9
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 1.4e-156 557.0 541 57.1
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 5.2e-156 555.1 471 63.9
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 6.8e-156 554.7 480 62.5
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 5.7e-155 551.6 474 65.2
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 1.7e-154 550.1 479 65.3
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 1.4e-153 547.0 376 74.2
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 2.0e-152 543.1 388 70.9
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 1.7e-151 540.0 526 56.8
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.7e-151 540.0 473 62.4
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 2.3e-151 539.7 479 62.8
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 1.5e-150 537.0 358 75.1
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 1.9e-150 536.6 388 69.8
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 4.3e-150 535.4 460 66.7
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 3.6e-149 532.3 443 64.1
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 4.7e-149 531.9 478 62.3
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 8.0e-149 531.2 503 59.2
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 1.4e-148 530.4 492 61.4
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 1.2e-147 527.3 343 77.3
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.5e-147 526.9 461 61.8
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 2.0e-147 526.6 453 62.7
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 9.8e-147 524.2 474 60.5
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 2.9e-146 522.7 473 64.3
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 1.8e-145 520.0 507 60.7
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 2.4e-145 519.6 473 63.8
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 5.4e-145 518.5 355 73.0
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 5.0e-143 511.9 498 59.0
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 1.1e-142 510.8 472 62.3
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 1.5e-139 500.4 396 67.4
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 2.4e-137 493.0 470 56.2
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 2.7e-136 489.6 292 82.9
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 3.5e-136 489.2 419 63.0
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 6.0e-136 488.4 516 55.6
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 6.6e-135 485.0 486 57.2
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 3.6e-133 479.2 344 70.1
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 5.2e-132 475.3 296 79.1
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 1.1e-129 467.6 512 54.5
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.6e-126 455.3 391 61.9
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 1.4e-124 450.7 344 65.7
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 8.9e-124 448.0 470 55.1
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.6e-120 435.6 434 55.1
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 3.0e-119 433.0 348 64.7
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.5e-118 430.6 334 67.7
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 9.6e-118 427.9 438 55.7
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.5e-115 420.6 471 52.4
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 2.1e-112 410.2 427 52.2
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 4.6e-112 409.1 579 46.1
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 9.0e-108 394.8 431 52.9
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.5e-107 394.0 346 60.4
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 7.9e-96 355.1 350 54.3
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 7.4e-94 348.6 402 49.8
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 2.8e-93 346.7 350 52.6
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 8.4e-90 335.1 302 59.9
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.3e-82 311.2 469 44.3
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 1.7e-66 257.7 274 51.8
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 4.7e-56 223.0 479 38.6
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 4.5e-51 206.5 379 36.1
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.6e-38 164.1 120 70.0
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 2.6e-30 137.5 242 38.4
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 4.9e-29 133.3 81 76.5
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.0e-26 125.6 394 29.9
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 3.6e-24 117.1 184 43.5
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 9.8e-22 109.0 125 49.6
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 1.3e-21 108.6 190 42.6
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.5e-14 85.1 186 36.6
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 1.5e-14 85.1 116 42.2
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 4.4e-14 83.6 116 41.4
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 2.1e-08 64.7 210 28.6
Medtr8g090145 Medicago truncatula HOM05D004480 ORTHO05D005546 1.8e-07 61.6 179 30.2
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 3.1e-07 60.8 210 28.6
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 3.1e-07 60.8 190 27.9
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 4.0e-07 60.5 215 26.5
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 4.0e-07 60.5 210 28.6
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 4.0e-07 60.5 210 28.6
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 4.0e-07 60.5 210 28.6
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 4.0e-07 60.5 209 25.8
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 4.0e-07 60.5 209 25.8
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 4.0e-07 60.5 209 25.8
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 4.0e-07 60.5 210 28.6
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 4.0e-07 60.5 268 23.1
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 4.0e-07 60.5 210 26.7
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 4.0e-07 60.5 210 28.1
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 5.2e-07 60.1 210 27.6
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 6.8e-07 59.7 206 27.2
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 6.8e-07 59.7 209 25.4
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 6.8e-07 59.7 218 24.8
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 6.8e-07 59.7 210 26.7
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 1.2e-06 58.9 264 25.0
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 2.6e-06 57.8 209 25.8
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 3.4e-06 57.4 209 24.4
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 3.4e-06 57.4 284 23.6
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 3.4e-06 57.4 231 23.8
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 5.8e-06 56.6 209 26.3
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 9.9e-06 55.8 297 23.6
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 9.9e-06 55.8 210 26.2
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 9.9e-06 55.8 210 25.7


User provided reference genes

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