Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 0.0e+00 1989.5 1061 100.0
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.0e-296 1022.7 769 73.7
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 3.4e-235 819.3 872 56.4
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 3.4e-235 819.3 872 56.9
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 1.9e-217 760.4 863 54.1
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.8e-188 664.1 881 48.1
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 5.9e-187 659.1 889 46.8
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.5e-177 627.9 887 45.9
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 7.5e-174 615.5 868 45.5
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.2e-171 608.2 868 45.4
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.2e-160 571.6 902 43.6
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.8e-151 541.2 666 49.7
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 6.6e-138 496.1 698 45.7
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.5e-129 467.6 917 37.9
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 6.2e-128 463.0 917 37.9
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 1.4e-127 461.8 896 38.1
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 7.6e-126 456.1 881 38.8
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 7.6e-126 456.1 883 37.9
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.4e-124 451.8 905 36.7
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 9.2e-124 449.1 895 37.7
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 1.2e-118 432.2 942 35.1
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 7.6e-118 429.5 910 37.0
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 4.9e-117 426.8 823 37.5
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 2.4e-116 424.5 908 34.8
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 1.9e-113 414.8 910 35.7
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 1.9e-113 414.8 901 35.5
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 3.3e-113 414.1 920 35.1
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 5.6e-113 413.3 919 34.8
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 7.3e-113 412.9 912 34.2
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 3.6e-112 410.6 905 35.4
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 4.8e-112 410.2 890 35.8
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 1.4e-111 408.7 902 35.5
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 7.6e-110 402.9 916 34.5
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 1.3e-109 402.1 875 34.9
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 1.7e-109 401.7 917 33.5
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.7e-109 401.7 914 34.5
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 2.2e-109 401.4 879 34.0
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 2.9e-109 401.0 916 34.5
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.1e-108 399.1 913 34.3
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 1.4e-108 398.7 897 34.7
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 1.9e-108 398.3 907 34.4
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.4e-108 397.9 905 33.0
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 9.3e-108 396.0 905 33.0
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.2e-107 395.6 914 34.1
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 1.2e-107 395.6 874 35.7
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 2.1e-107 394.8 500 50.4
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 3.5e-107 394.0 746 37.4
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.0e-107 393.3 905 33.0
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.5e-105 388.7 913 34.2
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 5.6e-105 386.7 360 62.2
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 9.6e-105 386.0 861 35.4
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.3e-104 385.6 926 34.1
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 8.1e-104 382.9 421 54.6
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 8.1e-104 382.9 970 33.4
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 6.9e-103 379.8 850 35.2
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 1.5e-102 378.6 895 34.7
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 7.6e-102 376.3 881 34.4
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 4.2e-100 370.5 424 51.2
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 4.2e-100 370.5 865 35.4
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 4.2e-100 370.5 898 34.4
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.2e-99 369.0 906 34.2
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.2e-99 369.0 920 32.0
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 1.6e-99 368.6 896 33.3
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 3.5e-99 367.5 607 40.0
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 3.5e-99 367.5 899 32.6
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 7.9e-99 366.3 882 33.2
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 1.0e-98 365.9 884 34.2
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.1e-98 363.6 911 32.2
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 6.7e-98 363.2 607 39.9
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 6.7e-98 363.2 953 34.5
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.5e-97 362.1 913 32.1
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 4.3e-97 360.5 897 33.3
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 3.1e-95 354.4 949 33.2
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 4.0e-95 354.0 599 39.7
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 9.0e-95 352.8 845 35.0
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.5e-94 352.1 911 31.4
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 2.6e-94 351.3 874 33.9
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.3e-93 349.0 646 37.9
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 1.3e-93 349.0 898 33.1
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 6.5e-93 346.7 875 33.6
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.5e-92 344.7 820 32.3
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.7e-91 341.3 837 31.7
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 4.6e-91 340.5 895 32.1
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 7.9e-91 339.7 612 41.2
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.3e-90 339.0 438 49.8
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.0e-90 337.8 621 40.3
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.9e-90 337.4 819 31.7
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 4.3e-89 334.0 785 34.1
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 4.3e-89 334.0 625 39.0
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 1.3e-88 332.4 885 32.8
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 3.7e-88 330.9 801 36.1
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.4e-87 328.9 907 32.3
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 3.1e-87 327.8 901 32.0
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 3.1e-87 327.8 607 38.4
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 5.3e-87 327.0 471 44.6
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 4.5e-86 323.9 894 32.4
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 1.0e-85 322.8 974 30.9
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 6.5e-85 320.1 438 47.3
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 6.5e-85 320.1 927 31.6
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 4.6e-83 313.9 428 47.0
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 2.5e-81 308.1 847 34.5
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 4.3e-81 307.4 872 33.4
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.2e-80 305.1 408 46.6
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.5e-78 298.9 869 31.6
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.0e-78 298.5 564 36.7
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.3e-77 295.8 841 31.6
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.7e-77 295.4 825 31.2
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 3.8e-77 294.3 884 31.3
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 1.6e-75 288.9 422 44.8
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.1e-73 282.7 850 29.2
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-73 282.7 466 46.6
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 2.0e-73 282.0 470 46.4
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 2.6e-73 281.6 631 38.4
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 7.4e-73 280.0 415 44.6
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 6.3e-72 276.9 613 37.7
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 5.3e-71 273.9 630 37.8
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 7.7e-70 270.0 468 44.4
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.0e-69 269.6 856 31.2
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.3e-69 269.2 854 31.9
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 2.2e-69 268.5 482 39.8
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 6.5e-69 266.9 858 31.0
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 4.2e-68 264.2 405 43.2
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.2e-67 262.7 807 31.8
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 1.6e-67 262.3 457 44.0
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.4e-66 259.2 221 57.9
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 1.5e-65 255.8 450 39.6
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 5.3e-63 247.3 388 46.1
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 7.0e-63 246.9 459 41.6
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 9.1e-63 246.5 389 46.0
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 1.2e-62 246.1 461 41.2
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 1.2e-62 246.1 461 41.2
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 1.6e-62 245.7 472 41.1
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 5.9e-62 243.8 486 41.4
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 7.7e-62 243.4 442 42.1
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 1.0e-61 243.0 461 41.6
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 1.0e-61 243.0 461 41.6
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 4.2e-60 237.7 390 41.8
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 7.2e-60 236.9 402 46.3
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 2.1e-59 235.3 481 42.4
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 3.6e-59 234.6 496 37.9
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 8.8e-58 229.9 403 39.7
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 1.5e-57 229.2 253 49.4
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 2.0e-57 228.8 402 44.8
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 2.0e-57 228.8 402 44.8
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 1.8e-55 222.2 466 36.3
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 4.1e-55 221.1 197 62.9
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.6e-54 219.2 323 50.8
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 3.5e-54 218.0 397 38.5
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 2.1e-51 208.8 286 55.6
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 9.8e-49 199.9 413 36.3
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 6.3e-48 197.2 305 40.7
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 1.8e-47 195.7 435 36.3
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 9.1e-47 193.4 263 46.8
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.9e-45 188.3 403 36.2
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.2e-43 183.0 421 34.7
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.8e-42 179.1 435 32.9
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.0e-42 178.3 394 35.3
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 2.0e-41 175.6 172 58.7
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 5.7e-41 174.1 200 48.5
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 2.9e-37 161.8 111 64.0
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 2.9e-37 161.8 415 36.4
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 8.6e-37 160.2 191 48.7
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 1.5e-36 159.5 138 60.9
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 7.3e-36 157.1 349 35.8
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 9.5e-36 156.8 164 51.2
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 6.1e-35 154.1 125 66.4
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.0e-34 153.3 127 64.6
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.6e-33 148.7 164 52.4
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 3.5e-30 138.3 241 36.9
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.2e-27 129.8 103 56.3
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.2e-27 129.8 272 44.5
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 3.6e-27 128.3 141 51.8
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 2.2e-24 119.0 96 59.4
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.6e-22 112.8 213 35.2
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 7.5e-17 94.0 154 39.0
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 5.1e-13 81.3 85 64.7
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.6e-13 80.9 91 49.5
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 2.6e-09 68.9 41 75.6
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 2.9e-08 65.5 105 35.2
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.6e-06 59.7 111 37.8
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 6.0e-06 57.8 102 32.4


User provided reference genes

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