Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002557g0050 Nicotiana tabacum HOM05D004195 ORTHO05D005309 0.0e+00 1214.5 601 100.0
Nitab4.5_0000317g0080 Nicotiana tabacum HOM05D004195 ORTHO05D005309 0.0e+00 1122.8 599 94.2
PGSC0003DMG400023024 Solanum tuberosum HOM05D004195 ORTHO05D005309 0.0e+00 1119.0 625 89.3
Peaxi162Scf00946g00016 Petunia axillaris HOM05D004195 ORTHO05D005309 0.0e+00 1105.1 608 89.8
Sopen04g025940 Solanum pennellii HOM05D004195 ORTHO05D005309 0.0e+00 1104.0 623 88.0
Peaxi162Scf00066g00527 Petunia axillaris HOM05D004195 ORTHO05D005309 0.0e+00 1101.7 623 88.1
CAN.G405.5 Capsicum annuum HOM05D004195 ORTHO05D005309 0.0e+00 1097.8 624 87.5
Solyc04g058070.3 Solanum lycopersicum HOM05D004195 ORTHO05D005309 0.0e+00 1094.7 623 87.8
MSTRG.25350 Avicennia marina HOM05D004195 ORTHO05D005309 7.0e-294 1013.4 621 79.1
Manes.18G083251 Manihot esculenta HOM05D004195 ORTHO05D005309 1.3e-292 1009.2 620 79.0
Migut.C01079 Erythranthe guttata HOM05D004195 ORTHO05D005309 3.8e-292 1007.7 617 79.3
TAR625G0293 Trochodendron aralioides HOM05D004195 ORTHO05D005309 3.8e-292 1007.7 616 78.6
Lj7C351T8 Lonicera japonica HOM05D004195 ORTHO05D005309 1.1e-291 1006.1 619 78.7
SalBow7G3728 Salvia bowleyana HOM05D004195 ORTHO05D005309 9.4e-291 1003.0 619 78.4
TWI60G0549 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 2.1e-290 1001.9 621 78.3
TAR381G1357 Trochodendron aralioides HOM05D004195 ORTHO05D005309 1.4e-289 999.2 621 77.1
Ciclev10000592m.g Citrus clementina HOM05D004195 ORTHO05D005309 8.8e-289 996.5 621 78.1
Actinidia15207 Actinidia chinensis HOM05D004195 ORTHO05D005309 2.0e-288 995.3 621 77.9
CSS0005980 Camellia sinensis var. sinensis HOM05D004195 ORTHO05D005309 4.4e-288 994.2 621 77.3
Gohir.A08G221616 Gossypium hirsutum HOM05D004195 ORTHO05D005309 5.7e-288 993.8 622 78.0
Thecc.08G133900 Theobroma cacao HOM05D004195 ORTHO05D005309 5.7e-288 993.8 616 78.6
Cc10_g13640 Coffea canephora HOM05D004195 ORTHO05D005309 2.8e-287 991.5 621 77.6
TWI34G0939 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 6.3e-287 990.3 624 77.2
SGA_v2.0_scaffold7G03728 Striga asiatica HOM05D004195 ORTHO05D005309 8.2e-287 989.9 625 77.6
Actinidia21272 Actinidia chinensis HOM05D004195 ORTHO05D005309 5.3e-286 987.3 621 77.1
Oeu045951.3 Olea europaea HOM05D004195 ORTHO05D005309 9.1e-286 986.5 635 76.7
Cfa018421 Carpinus fangiana HOM05D004195 ORTHO05D005309 1.2e-285 986.1 623 76.4
PGR042G0897 Punica granatum HOM05D004195 ORTHO05D005309 1.6e-285 985.7 622 76.4
Gorai.004G254500 Gossypium raimondii HOM05D004195 ORTHO05D005309 2.0e-285 985.3 622 77.5
CiPaw.15G030800 Carya illinoinensis HOM05D004195 ORTHO05D005309 3.8e-284 981.1 623 75.9
Rhsim11G0072300 Rhododendron simsii HOM05D004195 ORTHO05D005309 6.5e-284 980.3 668 72.9
MSTRG.1402 Avicennia marina HOM05D004195 ORTHO05D005309 1.1e-283 979.5 622 77.5
Potri.002G077400 Populus trichocarpa HOM05D004195 ORTHO05D005309 2.5e-283 978.4 613 77.2
Sabra02G0060800 Salix brachista HOM05D004195 ORTHO05D005309 2.5e-283 978.4 613 77.3
Atru.chr13.1591 Acer truncatum HOM05D004195 ORTHO05D005309 3.2e-283 978.0 619 75.8
Aa31LG9G14170 Aethionema arabicum HOM05D004195 ORTHO05D005309 3.2e-283 978.0 620 76.6
FAN20G1489 Fragaria x ananassa HOM05D004195 ORTHO05D005309 7.2e-283 976.9 605 77.9
Sed0021205 Sechium edule HOM05D004195 ORTHO05D005309 2.7e-282 974.9 608 78.3
THA.LOC104808371 Tarenaya hassleriana HOM05D004195 ORTHO05D000001 3.0e-281 971.5 595 79.5
MELO3C008467.2 Cucumis melo HOM05D004195 ORTHO05D005309 5.2e-281 970.7 610 78.0
CsaV3_6G034020 Cucumis sativus L. HOM05D004195 ORTHO05D005309 6.8e-281 970.3 609 78.0
unitig_748.g7692 Utricularia gibba HOM05D004195 ORTHO05D005309 8.8e-281 969.9 624 76.0
Gorai.013G108400 Gossypium raimondii HOM05D004195 ORTHO05D005309 1.5e-280 969.1 621 76.3
Gohir.D03G063000 Gossypium hirsutum HOM05D004195 ORTHO05D005309 9.8e-280 966.5 621 75.8
CiPaw.16G022400 Carya illinoinensis HOM05D004195 ORTHO05D005309 2.2e-279 965.3 621 75.0
Sp4g04790 Schrenkiella parvula HOM05D004195 ORTHO05D005309 6.3e-279 963.8 606 77.6
PSO729G0087 Papaver somniferum HOM05D004195 ORTHO05D005309 1.8e-278 962.2 614 76.9
Nn5g28450 Nelumbo nucifera HOM05D004195 ORTHO05D005309 1.6e-277 959.1 575 80.3
AUR62007701 Chenopodium quinoa HOM05D004195 ORTHO05D005309 4.5e-277 957.6 621 75.7
ClCG08G006050 Citrullus lanatus HOM05D004195 ORTHO05D005309 4.5e-277 957.6 611 77.6
RcHm_v2.0_Chr6g0296821 Rosa chinensis HOM05D004195 ORTHO05D005309 7.7e-277 956.8 594 77.8
HanXRQChr14g0452241 Helianthus annuus HOM05D004195 ORTHO05D005309 1.3e-276 956.1 623 73.8
HanXRQChr02g0055521 Helianthus annuus HOM05D004195 ORTHO05D005309 3.8e-276 954.5 610 75.7
AT5G52560 Arabidopsis thaliana HOM05D004195 ORTHO05D005309 5.0e-276 954.1 606 76.4
PSO724G0104 Papaver somniferum HOM05D004195 ORTHO05D005309 5.0e-276 954.1 614 75.9
AL8G27030 Arabidopsis lyrata HOM05D004195 ORTHO05D005309 6.5e-276 953.7 600 77.0
C08p38640 Brassica napus HOM05D004195 ORTHO05D005309 6.5e-276 953.7 606 77.1
BcaB08g35185 Brassica carinata HOM05D004195 ORTHO05D005309 8.5e-276 953.4 606 76.4
A09p55650 Brassica napus HOM05D004195 ORTHO05D005309 1.1e-275 953.0 606 76.7
BraA09t40966Z Brassica rapa HOM05D004195 ORTHO05D005309 1.5e-275 952.6 606 76.7
Carub.0008s1270 Capsella rubella HOM05D004195 ORTHO05D005309 2.5e-275 951.8 606 75.9
FAN27G3503 Fragaria x ananassa HOM05D004195 ORTHO05D005309 2.5e-275 951.8 643 73.3
BcaC07g40866 Brassica carinata HOM05D004195 ORTHO05D005309 4.2e-275 951.0 606 76.7
BolC8t51435H Brassica oleracea HOM05D004195 ORTHO05D005309 4.2e-275 951.0 606 76.7
DCAR_003592 Daucus carota HOM05D004195 ORTHO05D005309 5.5e-275 950.7 640 73.8
CARHR265560 Cardamine hirsuta HOM05D004195 ORTHO05D005309 1.2e-274 949.5 605 76.4
PSO541G1755 Papaver somniferum HOM05D004195 ORTHO05D005309 4.7e-274 947.6 611 74.8
Aqoxy6G00296 Aquilegia oxysepala HOM05D004195 ORTHO05D005309 1.0e-273 946.4 608 75.5
GSVIVG01008799001 Vitis vinifera HOM05D004195 ORTHO05D005309 4.0e-273 944.5 637 73.3
CANSAT25G3797 Cannabis sativa HOM05D004195 ORTHO05D005309 6.8e-273 943.7 631 73.1
Prupe.1G488700 Prunus persica HOM05D004195 ORTHO05D005309 8.8e-273 943.3 593 77.2
FAN24G0605 Fragaria x ananassa HOM05D004195 ORTHO05D005309 3.4e-272 941.4 638 73.0
MD15G1133100 Malus domestica HOM05D004195 ORTHO05D005309 7.5e-272 940.3 610 74.9
ECA238G0374 Erigeron canadensis HOM05D004195 ORTHO05D005309 1.3e-271 939.5 621 72.8
FAN15G2696 Fragaria x ananassa HOM05D004195 ORTHO05D005309 1.7e-271 939.1 643 72.3
Eucgr.F03856 Eucalyptus grandis HOM05D004195 ORTHO05D005309 1.1e-270 936.4 627 73.7
Lsat_1_v5_gn_2_99200 Lactuca sativa HOM05D004195 ORTHO05D005309 1.8e-270 935.6 622 73.6
EL10Ac1g01366 Beta vulgaris HOM05D004195 ORTHO05D005309 2.4e-270 935.3 621 74.4
Dinv14704 Davidia involucrata HOM05D004195 ORTHO05D005309 4.1e-270 934.5 627 74.5
Lalb_Chr23g0271201 Lupinus albus HOM05D004195 ORTHO05D005309 3.5e-269 931.4 603 75.6
Psat5g084360 Pisum sativum HOM05D004195 ORTHO05D005309 3.5e-269 931.4 601 75.5
Hund17352 Selenicereus undatus HOM05D004195 ORTHO05D005309 1.0e-268 929.9 640 72.8
ECA233G3807 Erigeron canadensis HOM05D004195 ORTHO05D005309 2.9e-268 928.3 603 73.5
Zm00001eb226930 Zea mays HOM05D004195 ORTHO05D005309 3.8e-268 927.9 605 73.7
VMungo1309G1545 Vigna mungo HOM05D004195 ORTHO05D005309 6.6e-268 927.2 601 75.2
Medtr3g088650 Medicago truncatula HOM05D004195 ORTHO05D005309 1.9e-267 925.6 601 74.9
Lj1g0006497 Lotus japonicus HOM05D004195 ORTHO05D005309 3.3e-267 924.9 598 75.8
TPR.G6326 Trifolium pratense HOM05D004195 ORTHO05D005309 7.3e-267 923.7 603 74.6
vmacro00869 Vaccinium macrocarpon HOM05D004195 ORTHO05D005309 2.1e-266 922.2 621 73.8
Phvul.009G130500 Phaseolus vulgaris HOM05D004195 ORTHO05D005309 4.7e-266 921.0 601 74.9
Glyma.04G245100 Glycine max HOM05D004195 ORTHO05D005309 1.0e-265 919.8 606 73.9
Thhalv10000457m.g Eutrema salsugineum HOM05D004195 ORTHO05D005309 2.9e-263 911.8 606 74.4
Gohir.A05G238300 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.5e-259 899.4 624 72.3
Os06g0701200 Oryza sativa ssp. japonica HOM05D004195 ORTHO05D005309 2.5e-259 898.7 612 72.2
FvH4_2g28000 Fragaria vesca HOM05D004195 ORTHO05D005309 4.3e-259 897.9 562 77.6
ATR1001G002 Amborella trichopoda HOM05D004195 ORTHO05D005309 2.8e-258 895.2 622 70.3
SGA_v2.0_scaffold52G18908 Striga asiatica HOM05D004195 ORTHO05D005309 2.2e-255 885.6 567 77.1
HPP92_005775 Vanilla planifolia HOM05D004195 ORTHO05D005309 2.2e-255 885.6 618 70.9
HPP92_009336 Vanilla planifolia HOM05D004195 ORTHO05D005309 5.2e-249 864.4 622 68.6
Gohir.A10G100400 Gossypium hirsutum HOM05D004195 ORTHO05D005309 6.8e-249 864.0 570 75.3
SEGI_41147 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 2.0e-248 862.4 602 69.9
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 4.4e-248 861.3 603 71.8
CDE07G0325 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 2.9e-247 858.6 617 67.6
Haze_17642 Corylus avellana HOM05D004195 ORTHO05D005309 5.4e-246 854.4 635 68.2
Sc26g0002830 Simmondsia chinensis HOM05D004195 ORTHO05D005309 9.2e-246 853.6 591 72.1
Ca_16614_v3 Cicer arietinum L. HOM05D004195 ORTHO05D005309 6.0e-245 850.9 549 76.1
PSO675G4690 Papaver somniferum HOM05D004195 ORTHO05D005309 3.6e-242 841.6 579 71.5
BcaB08g36106 Brassica carinata HOM05D004195 ORTHO05D005309 3.1e-241 838.6 604 70.9
Cpa.g.sc64.151 Carica papaya HOM05D004195 ORTHO05D005309 4.0e-241 838.2 515 78.8
arahy.Tifrunner.gnm1.ann1.8W34DS Arachis hypogaea HOM05D004195 ORTHO05D005309 8.9e-241 837.0 548 75.0
arahy.Tifrunner.gnm1.ann1.MX6LT2 Arachis hypogaea HOM05D004195 ORTHO05D005309 8.4e-239 830.5 555 74.1
arahy.Tifrunner.gnm1.ann1.TVXF2I Arachis hypogaea HOM05D004195 ORTHO05D005309 8.4e-239 830.5 555 74.1
HPP92_005816 Vanilla planifolia HOM05D004195 ORTHO05D005309 3.9e-236 821.6 618 66.8
Hma1.2p1_0880F.1_g231850 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 2.1e-229 799.3 491 79.6
Lj4C664G15 Lonicera japonica HOM05D004195 ORTHO05D005309 4.0e-225 785.0 579 69.3
SHI09238 Sapria himalayana HOM05D004195 ORTHO05D005309 1.5e-224 783.1 620 64.4
Ah.04g163390 Amaranthus hybridus HOM05D004195 ORTHO05D005309 4.5e-224 781.6 514 74.9
Duzib093G0036 Durio zibethinus HOM05D004195 ORTHO05D005309 3.1e-217 758.8 982 46.0
SMO144G0039 Selaginella moellendorffii HOM05D004195 ORTHO05D005309 2.0e-216 756.1 587 63.9
Pp3c14_26160 Physcomitrium patens HOM05D004195 ORTHO05D005309 9.9e-216 753.8 596 62.1
Mapoly0020s0171 Marchantia polymorpha HOM05D004195 ORTHO05D005309 4.2e-214 748.4 595 62.9
Lj4A674G55 Lonicera japonica HOM05D004195 ORTHO05D005309 1.2e-208 730.3 566 65.5
Glyma.06G118100 Glycine max HOM05D004195 ORTHO05D005309 1.1e-201 707.2 465 74.0
AUR62013440 Chenopodium quinoa HOM05D004195 ORTHO05D005309 3.0e-196 689.1 441 76.6
Gohir.A02G111000 Gossypium hirsutum HOM05D004195 ORTHO05D005309 2.9e-191 672.5 422 76.5
CBR_g38016 Chara braunii HOM05D004195 ORTHO05D005309 1.3e-183 647.1 616 56.7
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 1.3e-175 620.5 602 56.3
Cre14.g621751 Chlamydomonas reinhardtii HOM05D004195 ORTHO05D005309 1.5e-166 590.5 605 53.2
Gorai.005G087200 Gossypium raimondii HOM05D004195 ORTHO05D005309 2.6e-163 579.7 502 61.8
MCO16G082 Micromonas commoda HOM05D004195 ORTHO05D005309 5.9e-160 568.5 602 50.8
Dinv27262 Davidia involucrata HOM05D004195 ORTHO05D005309 7.7e-160 568.2 327 81.7
AagrBONN_evm.TU.Sc2ySwM_228.475 Anthoceros agrestis HOM05D004195 ORTHO05D005309 1.2e-152 544.3 432 62.5
Zm00001eb272890 Zea mays HOM05D004195 ORTHO05D005309 2.9e-146 523.1 325 76.9
PRCOL_00000078 Prasinoderma coloniale HOM05D004195 ORTHO05D005309 1.6e-144 517.3 605 47.9
SEGI_17681 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 1.5e-142 510.8 365 69.9
Manes.02G169300 Manihot esculenta HOM05D004195 ORTHO05D005309 7.3e-142 508.4 339 73.7
Sed0024885 Sechium edule HOM05D004195 ORTHO05D005309 1.9e-118 430.6 272 76.5
CDE06G0343 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 4.7e-117 426.0 273 72.2
Gohir.D02G077650 Gossypium hirsutum HOM05D004195 ORTHO05D005309 4.0e-116 422.9 401 59.1
CDE06G1518 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 1.7e-106 391.0 280 67.1
Pp3c7_22840 Physcomitrium patens HOM05D004195 ORTHO05D005309 1.3e-103 381.3 538 41.4
HPP92_005823 Vanilla planifolia HOM05D004195 ORTHO05D005309 9.0e-92 342.0 249 66.3
Sopen04g025970 Solanum pennellii HOM05D004195 ORTHO05D005309 6.3e-85 319.3 183 86.3
Dinv27263 Davidia involucrata HOM05D004195 ORTHO05D005309 5.9e-83 312.8 192 77.6
Zm00001eb215830 Zea mays HOM05D004195 ORTHO05D005309 1.3e-82 311.6 220 70.5
Duzib116G0462 Durio zibethinus HOM05D004195 ORTHO05D005309 2.9e-82 310.5 359 50.1
AUR62013439 Chenopodium quinoa HOM05D004195 ORTHO05D005309 2.8e-69 267.3 188 70.2
Zm00001eb237030 Zea mays HOM05D004195 ORTHO05D005309 2.0e-54 218.0 151 73.5
Sed0012376 Sechium edule HOM05D004195 ORTHO05D005309 1.0e-47 195.7 127 77.2
Lsat_1_v5_gn_6_45121 Lactuca sativa HOM05D004195 ORTHO05D035846 8.8e-47 192.6 262 44.3
HPP92_009371 Vanilla planifolia HOM05D004195 ORTHO05D005309 1.5e-46 191.8 127 71.7
Lsat_1_v5_gn_6_43041 Lactuca sativa HOM05D004195 ORTHO05D035846 5.4e-44 183.3 381 33.9
Cpa.g.c44850 Carica papaya HOM05D004195 ORTHO05D005309 1.3e-37 162.2 109 71.6
Gohir.D08G239084 Gossypium hirsutum HOM05D004195 ORTHO05D005309 9.2e-36 156.0 109 71.6
FAN15G2766 Fragaria x ananassa HOM05D004195 ORTHO05D005309 5.6e-33 146.7 109 62.4
Ah.04g163400 Amaranthus hybridus HOM05D004195 ORTHO05D005309 1.6e-32 145.2 90 74.4
Lsat_1_v5_gn_6_43121 Lactuca sativa HOM05D004195 ORTHO05D005309 8.3e-29 132.9 260 36.9
Hund26746 Selenicereus undatus HOM05D004195 ORTHO05D005309 7.8e-27 126.3 108 61.1
VMungo0720G0521 Vigna mungo HOM05D000196 ORTHO05D000279 2.3e-26 124.8 84 67.9
Duzib213G0704 Durio zibethinus HOM05D004195 ORTHO05D005309 1.2e-24 119.0 80 66.2
QL10p065861 Quercus lobata HOM05D001716 ORTHO05D004234 2.3e-23 114.8 56 94.6
Hma1.2p1_0349F.1_g132280 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 4.6e-19 100.5 69 62.3
Hund26745 Selenicereus undatus HOM05D004195 ORTHO05D005309 1.3e-18 99.0 71 66.2
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 2.6e-14 84.7 50 80.0
CBR_g45707 Chara braunii HOM05D003927 ORTHO05D004905 1.4e-12 79.0 179 30.2
FAN26G1170 Fragaria x ananassa HOM05D004195 ORTHO05D035846 2.7e-11 74.7 37 86.5
Hma1.2p1_2689F.1_g326990 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 1.3e-10 72.4 58 53.4
Os08g0206900 Oryza sativa ssp. japonica HOM05D003927 ORTHO05D004905 3.0e-10 71.2 162 30.9
Gohir.D07G155733 Gossypium hirsutum HOM05D004195 ORTHO05D217344 3.9e-10 70.9 42 76.2
QL05p063882 Quercus lobata HOM05D001716 ORTHO05D004234 6.6e-10 70.1 35 91.4
RcHm_v2.0_Chr3g0470721 Rosa chinensis HOM05D004195 ORTHO05D050721 1.5e-09 68.9 42 78.6
vmacro11216 Vaccinium macrocarpon HOM05D004195 ORTHO05D050721 1.5e-09 68.9 55 65.5
HPP92_005821 Vanilla planifolia HOM05D004195 ORTHO05D429708 4.3e-09 67.4 107 38.3
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 1.6e-08 65.5 164 25.6
MBI11_g47560_MAGBIO Magnolia biondii HOM05D002408 ORTHO05D002534 3.6e-08 64.3 45 60.0
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 6.2e-08 63.5 40 67.5
Lsat_1_v5_gn_9_125000 Lactuca sativa HOM05D004195 ORTHO05D005309 6.2e-08 63.5 73 43.8


User provided reference genes

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