Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 5.2e-153 544.3 263 100.0
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 7.5e-83 311.2 273 62.6
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 2.2e-79 299.7 263 61.2
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 3.8e-79 298.9 269 61.3
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 4.2e-78 295.4 267 60.3
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 4.7e-77 292.0 263 59.7
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 5.9e-72 275.0 134 95.5
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.6e-69 265.8 134 93.3
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 2.6e-67 259.6 273 53.1
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 1.3e-66 257.3 266 53.4
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 3.7e-66 255.8 266 52.3
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 4.9e-66 255.4 267 53.9
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 1.8e-65 253.4 265 52.8
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 1.6e-64 250.4 272 51.1
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.7e-64 249.6 267 51.7
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 4.5e-64 248.8 274 50.7
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.7e-63 246.9 267 51.3
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 2.3e-63 246.5 269 50.9
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.1e-62 244.2 269 52.0
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.9e-62 243.4 264 51.5
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 2.5e-62 243.0 267 52.8
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 3.3e-62 242.7 265 51.3
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 3.3e-62 242.7 277 46.9
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 4.3e-62 242.3 263 50.2
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 4.3e-62 242.3 273 50.5
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 7.3e-62 241.5 269 52.0
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 7.3e-62 241.5 282 48.6
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 9.5e-62 241.1 268 50.7
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 9.5e-62 241.1 271 52.0
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 1.6e-61 240.4 270 53.3
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 1.6e-61 240.4 272 48.2
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 3.6e-61 239.2 267 50.9
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 3.6e-61 239.2 292 49.0
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 3.6e-61 239.2 275 52.7
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 4.7e-61 238.8 277 51.6
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 6.1e-61 238.4 268 49.6
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 8.0e-61 238.0 268 49.6
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 8.0e-61 238.0 264 50.8
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 8.0e-61 238.0 264 50.0
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 1.4e-60 237.3 266 50.8
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 3.0e-60 236.1 273 49.8
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 3.0e-60 236.1 264 50.8
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 8.9e-60 234.6 275 48.4
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 1.5e-59 233.8 267 49.8
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.5e-59 233.8 268 50.4
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 1.5e-59 233.8 270 49.3
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 2.6e-59 233.0 267 50.6
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 2.6e-59 233.0 273 51.6
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 4.4e-59 232.3 280 49.6
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 7.5e-59 231.5 273 49.5
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 7.5e-59 231.5 265 50.2
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 1.3e-58 230.7 272 48.2
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 1.3e-58 230.7 273 49.5
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 1.3e-58 230.7 264 50.4
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 1.3e-58 230.7 277 48.7
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.7e-58 230.3 272 49.3
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.7e-58 230.3 272 49.6
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 1.7e-58 230.3 279 45.9
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 2.9e-58 229.6 265 47.2
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 3.7e-58 229.2 283 48.8
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 6.4e-58 228.4 279 50.2
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 6.4e-58 228.4 261 49.8
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 8.3e-58 228.0 270 51.1
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 8.3e-58 228.0 268 49.6
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 1.8e-57 226.9 265 49.4
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 1.8e-57 226.9 275 47.3
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 4.1e-57 225.7 273 50.2
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 4.1e-57 225.7 269 50.6
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 5.4e-57 225.3 268 49.3
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 5.4e-57 225.3 268 49.3
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 5.4e-57 225.3 268 49.3
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 9.2e-57 224.6 264 50.0
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 1.6e-56 223.8 267 49.1
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 2.0e-56 223.4 268 48.9
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 2.7e-56 223.0 271 49.1
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 2.7e-56 223.0 273 49.5
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 3.5e-56 222.6 277 47.7
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 4.6e-56 222.2 267 48.7
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 6.0e-56 221.9 277 46.6
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 6.0e-56 221.9 272 47.4
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 7.8e-56 221.5 270 49.3
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 1.0e-55 221.1 275 45.8
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 2.3e-55 219.9 270 46.7
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 3.0e-55 219.5 274 48.9
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 3.9e-55 219.2 270 48.9
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 3.9e-55 219.2 270 48.9
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 1.5e-54 217.2 270 48.5
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 2.5e-54 216.5 269 45.4
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 2.5e-54 216.5 276 42.0
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 4.3e-54 215.7 269 46.8
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.3e-54 215.7 157 69.4
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 7.3e-54 214.9 271 45.8
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 9.5e-54 214.5 264 48.9
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 2.1e-53 213.4 268 45.1
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 2.1e-53 213.4 275 45.5
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 2.8e-53 213.0 262 47.7
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 4.7e-53 212.2 270 48.5
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 4.7e-53 212.2 267 47.6
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 6.2e-53 211.8 273 48.0
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 1.4e-52 210.7 304 44.4
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 3.1e-52 209.5 268 44.0
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 8.9e-52 208.0 266 43.6
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 8.9e-52 208.0 136 69.9
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 1.2e-51 207.6 250 51.6
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.5e-51 207.2 362 42.0
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 2.6e-51 206.5 257 47.1
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 9.8e-51 204.5 264 45.1
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 1.3e-50 204.1 275 43.6
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 1.7e-50 203.8 282 43.6
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.9e-50 203.0 270 43.7
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 3.2e-49 199.5 275 42.5
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 3.2e-49 199.5 266 44.7
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 4.1e-49 199.1 335 37.3
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 1.2e-48 197.6 266 43.6
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 2.5e-46 189.9 126 69.0
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 4.7e-45 185.7 222 45.9
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.4e-44 184.1 240 42.1
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 2.3e-44 183.3 241 43.2
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 1.5e-43 180.6 102 79.4
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 7.5e-43 178.3 272 41.2
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 1.3e-42 177.6 221 48.9
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 2.9e-42 176.4 219 47.0
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 8.3e-42 174.9 238 42.0
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 1.1e-41 174.5 250 43.6
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 2.1e-40 170.2 227 44.1
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 3.5e-40 169.5 274 43.4
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 3.5e-40 169.5 220 44.5
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 6.0e-40 168.7 261 36.4
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 2.3e-39 166.8 281 38.8
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 8.6e-39 164.9 224 44.2
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 8.1e-37 158.3 269 37.9
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.6e-35 153.3 206 47.1
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 9.9e-35 151.4 206 47.6
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 1.2e-32 144.4 197 45.2
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 2.7e-32 143.3 196 46.9
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 7.8e-32 141.7 192 49.0
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 7.8e-32 141.7 132 53.0
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 5.1e-31 139.0 205 43.9
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 4.0e-28 129.4 217 42.4
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.5e-27 127.5 238 35.3
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 5.8e-27 125.6 98 56.1
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 1.1e-25 121.3 209 38.3
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 3.0e-23 113.2 176 44.3
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 6.6e-23 112.1 173 44.5
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 3.3e-22 109.8 98 48.0
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 6.2e-21 105.5 78 60.3
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.2e-17 92.8 190 34.7
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 9.3e-17 91.7 109 42.2
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.1e-16 90.5 80 51.2
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 6.0e-16 89.0 133 38.3
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 2.3e-15 87.0 183 34.4
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 3.0e-15 86.7 318 28.6
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.0e-15 86.7 102 41.2
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.1e-14 84.7 109 39.4
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 4.0e-12 76.3 168 35.7
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 6.9e-12 75.5 223 32.3
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 1.7e-10 70.9 50 56.0
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 2.4e-09 67.0 47 66.0
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 3.5e-08 63.2 37 81.1
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 3.5e-08 63.2 37 81.1
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 6.0e-08 62.4 46 67.4
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 2.5e-06 57.0 48 58.3


User provided reference genes

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