Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002421g0010 Nicotiana tabacum HOM05D006827 ORTHO05D008725 3.6e-161 571.6 309 100.0
Nitab4.5_0004047g0010 Nicotiana tabacum HOM05D006827 ORTHO05D008725 4.3e-146 521.5 314 93.0
Solyc01g058190.4 Solanum lycopersicum HOM05D006827 ORTHO05D008725 4.2e-125 451.8 316 79.7
PGSC0003DMG400015968 Solanum tuberosum HOM05D006827 ORTHO05D008725 9.6e-122 440.7 314 78.7
Sopen01g023660 Solanum pennellii HOM05D006827 ORTHO05D008725 1.1e-114 417.2 313 75.7
CAN.G281.10 Capsicum annuum HOM05D006827 ORTHO05D008725 1.5e-114 416.8 303 78.5
CAN.G582.1 Capsicum annuum HOM05D006827 ORTHO05D008725 9.0e-104 380.9 314 74.2
Cc03_g00540 Coffea canephora HOM05D006827 ORTHO05D008725 2.3e-91 339.7 315 62.9
Dinv15137 Davidia involucrata HOM05D006827 ORTHO05D008725 6.7e-91 338.2 309 60.8
Peaxi162Scf00228g00735 Petunia axillaris HOM05D006827 ORTHO05D008725 4.5e-87 325.5 221 82.4
Oeu014225.1 Olea europaea HOM05D006827 ORTHO05D008725 4.6e-84 315.5 304 60.5
Nn3g21791 Nelumbo nucifera HOM05D006827 ORTHO05D008725 5.7e-82 308.5 270 64.8
CiPaw.01G134600 Carya illinoinensis HOM05D006827 ORTHO05D008725 2.4e-80 303.1 286 63.3
TAR365G1248 Trochodendron aralioides HOM05D006827 ORTHO05D008725 2.4e-80 303.1 244 68.9
GSVIVG01034952001 Vitis vinifera HOM05D006827 ORTHO05D008725 4.1e-80 302.4 257 63.8
Migut.N00027 Erythranthe guttata HOM05D006827 ORTHO05D008725 9.1e-80 301.2 240 64.6
MSTRG.3845 Avicennia marina HOM05D006827 ORTHO05D008725 1.2e-79 300.8 177 81.4
Actinidia31567 Actinidia chinensis HOM05D006827 ORTHO05D008725 2.0e-79 300.1 275 61.5
Gorai.011G202600 Gossypium raimondii HOM05D006827 ORTHO05D008725 2.9e-78 296.2 262 60.7
Thecc.04G305900 Theobroma cacao HOM05D006827 ORTHO05D008725 3.8e-78 295.8 226 67.3
Gohir.A10G174600 Gossypium hirsutum HOM05D006827 ORTHO05D008725 5.0e-78 295.4 262 60.7
PGR031G1277 Punica granatum HOM05D006827 ORTHO05D008725 2.5e-77 293.1 237 67.5
Gohir.D10G181100 Gossypium hirsutum HOM05D006827 ORTHO05D008725 4.2e-77 292.4 225 67.1
TWI53G1816 Tripterygium wilfordii HOM05D006827 ORTHO05D008725 7.2e-77 291.6 186 76.3
Ah.13g071520 Amaranthus hybridus HOM05D006827 ORTHO05D008725 9.4e-77 291.2 291 59.1
MBI18_g27379_MAGBIO Magnolia biondii HOM05D006827 ORTHO05D008725 9.4e-77 291.2 271 61.6
EL10Ac3g05552 Beta vulgaris HOM05D006827 ORTHO05D008725 1.6e-76 290.4 253 62.1
DCAR_023373 Daucus carota HOM05D006827 ORTHO05D008725 4.7e-76 288.9 255 63.1
COL.COLO4_34569 Corchorus olitorius HOM05D001281 ORTHO05D001139 6.1e-76 288.5 210 68.6
Aa31LG8G4170 Aethionema arabicum HOM05D006827 ORTHO05D008725 7.9e-76 288.1 191 73.8
Potri.008G101900 Populus trichocarpa HOM05D006827 ORTHO05D008725 1.4e-75 287.3 245 63.3
Manes.03G207700 Manihot esculenta HOM05D006827 ORTHO05D008725 1.8e-75 287.0 238 66.0
TWI09G0591 Tripterygium wilfordii HOM05D006827 ORTHO05D008725 5.1e-75 285.4 217 71.0
Cfa015277 Carpinus fangiana HOM05D006827 ORTHO05D008725 6.7e-75 285.0 265 62.3
THA.LOC104820318 Tarenaya hassleriana HOM05D006827 ORTHO05D008725 6.7e-75 285.0 188 74.5
Carub.0003s1692 Capsella rubella HOM05D006827 ORTHO05D008725 1.5e-74 283.9 175 76.6
Sp3g15370 Schrenkiella parvula HOM05D006827 ORTHO05D008725 2.0e-74 283.5 177 76.8
unitig_88.g27700 Utricularia gibba HOM05D006827 ORTHO05D008725 2.0e-74 283.5 181 75.1
AL3G30170 Arabidopsis lyrata HOM05D006827 ORTHO05D008725 3.3e-74 282.7 181 75.7
BcaB04g20857 Brassica carinata HOM05D006827 ORTHO05D008725 3.3e-74 282.7 177 77.4
CARHR092440 Cardamine hirsuta HOM05D006827 ORTHO05D008725 4.4e-74 282.3 175 74.9
AUR62016245 Chenopodium quinoa HOM05D002153 ORTHO05D002137 5.7e-74 282.0 290 56.9
PSO761G0463 Papaver somniferum HOM05D006827 ORTHO05D008725 5.7e-74 282.0 185 73.0
BcaC09g48674 Brassica carinata HOM05D006827 ORTHO05D008725 9.7e-74 281.2 178 76.4
A01p37130 Brassica napus HOM05D006827 ORTHO05D008725 9.7e-74 281.2 176 77.3
BraA01t03774Z Brassica rapa HOM05D006827 ORTHO05D008725 9.7e-74 281.2 176 77.3
CANSAT78G0077 Cannabis sativa HOM05D006827 ORTHO05D008725 1.7e-73 280.4 177 74.6
HanXRQChr05g0148611 Helianthus annuus HOM05D006827 ORTHO05D008725 2.8e-73 279.6 250 67.6
Hma1.2p1_0516F.1_g170510 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 2.8e-73 279.6 318 53.8
Prupe.1G113000 Prunus persica HOM05D006827 ORTHO05D008725 3.7e-73 279.3 272 59.6
SGA_v2.0_scaffold227G43227 Striga asiatica HOM05D006827 ORTHO05D008725 1.1e-72 277.7 177 76.8
Sc25g0003190 Simmondsia chinensis HOM05D006827 ORTHO05D008725 1.4e-72 277.3 248 62.5
AT3G17170 Arabidopsis thaliana HOM05D006827 ORTHO05D008725 1.8e-72 276.9 180 73.9
ECA246G4663 Erigeron canadensis HOM05D002153 ORTHO05D002137 1.8e-72 276.9 235 63.8
ClCG06G004410 Citrullus lanatus HOM05D006827 ORTHO05D008725 2.4e-72 276.6 237 64.1
Lj3A834T69 Lonicera japonica HOM05D006827 ORTHO05D008725 2.4e-72 276.6 172 76.7
Sed0009970 Sechium edule HOM05D006827 ORTHO05D008725 4.1e-72 275.8 207 69.6
Aqoxy2G02656 Aquilegia oxysepala HOM05D006827 ORTHO05D008725 9.1e-72 274.6 164 81.7
Eucgr.B03980 Eucalyptus grandis HOM05D006827 ORTHO05D008725 1.6e-71 273.9 304 54.9
QL06p013028 Quercus lobata HOM05D006827 ORTHO05D008725 2.0e-71 273.5 222 68.5
BcaC09g48673 Brassica carinata HOM05D006827 ORTHO05D008725 4.5e-71 272.3 216 67.6
C01p47070 Brassica napus HOM05D006827 ORTHO05D008725 4.5e-71 272.3 216 67.6
Thhalv10021204m.g Eutrema salsugineum HOM05D006827 ORTHO05D008725 4.5e-71 272.3 209 66.5
BolC1t04673H Brassica oleracea HOM05D006827 ORTHO05D008725 2.2e-70 270.0 216 67.1
PSO210G0119 Papaver somniferum HOM05D006827 ORTHO05D008725 2.2e-70 270.0 242 59.1
FvH4_4g20660 Fragaria vesca HOM05D006827 ORTHO05D008725 3.8e-70 269.2 244 57.8
FAN12G3056 Fragaria x ananassa HOM05D006827 ORTHO05D008725 3.8e-70 269.2 244 57.8
MELO3C021255.2 Cucumis melo HOM05D006827 ORTHO05D008725 1.9e-69 266.9 329 52.9
Rhsim04G0242100 Rhododendron simsii HOM05D006827 ORTHO05D008725 1.9e-69 266.9 231 63.6
arahy.Tifrunner.gnm1.ann1.W8AIPN Arachis hypogaea HOM05D006827 ORTHO05D008725 5.5e-69 265.4 271 55.4
Duzib212G0426 Durio zibethinus HOM05D006827 ORTHO05D008725 5.5e-69 265.4 299 53.8
arahy.Tifrunner.gnm1.ann1.7T6EZL Arachis hypogaea HOM05D006827 ORTHO05D008725 7.2e-69 265.0 271 55.4
Glyma.15G137900 Glycine max HOM05D006827 ORTHO05D008725 9.4e-69 264.6 239 59.0
Lsat_1_v5_gn_6_116121 Lactuca sativa HOM05D006827 ORTHO05D008725 9.4e-69 264.6 299 52.8
Hund11994 Selenicereus undatus HOM05D006827 ORTHO05D008725 9.4e-69 264.6 194 70.6
VMungo0540G1290 Vigna mungo HOM05D006827 ORTHO05D008725 9.4e-69 264.6 228 59.2
MD13G1149000 Malus domestica HOM05D006827 ORTHO05D008725 1.2e-68 264.2 293 53.2
Ciclev10005460m.g Citrus clementina HOM05D006827 ORTHO05D008725 1.6e-68 263.8 246 62.2
RcHm_v2.0_Chr4g0426061 Rosa chinensis HOM05D006827 ORTHO05D008725 1.6e-68 263.8 282 58.5
Glyma.09G032900 Glycine max HOM05D001281 ORTHO05D008725 2.1e-68 263.5 246 58.1
Phvul.006G120200 Phaseolus vulgaris HOM05D006827 ORTHO05D008725 2.7e-68 263.1 274 53.6
TPR.G33906 Trifolium pratense HOM05D006827 ORTHO05D008725 3.6e-68 262.7 248 58.1
FAN07G0118 Fragaria x ananassa HOM05D006827 ORTHO05D008725 4.7e-68 262.3 250 56.0
ATR1120G107 Amborella trichopoda HOM05D006827 ORTHO05D008725 6.1e-68 261.9 202 65.3
HPP92_027958 Vanilla planifolia HOM05D006827 ORTHO05D008725 8.0e-68 261.5 187 69.0
Zm00001eb136900 Zea mays HOM05D006827 ORTHO05D008725 1.8e-67 260.4 234 58.5
Os12g0563200 Oryza sativa ssp. japonica HOM05D006827 ORTHO05D008725 2.3e-67 260.0 243 58.4
Ca_00959_v3 Cicer arietinum L. HOM05D006827 ORTHO05D008725 3.0e-67 259.6 226 59.7
arahy.Tifrunner.gnm1.ann1.GV6LK0 Arachis hypogaea HOM05D006827 ORTHO05D008725 1.1e-66 257.7 233 58.4
Lj6g0001147 Lotus japonicus HOM05D001281 ORTHO05D001139 2.0e-66 256.9 216 60.2
Haze_01351 Corylus avellana HOM05D002153 ORTHO05D002137 4.4e-66 255.8 328 50.9
QL03p023650 Quercus lobata HOM05D006827 ORTHO05D008725 3.7e-65 252.7 265 57.0
Sabra08G0077100 Salix brachista HOM05D006827 ORTHO05D007631 1.1e-64 251.1 251 57.0
Medtr2g033490 Medicago truncatula HOM05D006827 ORTHO05D008725 1.0e-62 244.6 280 49.3
Lalb_Chr18g0058551 Lupinus albus HOM05D006827 ORTHO05D008725 1.3e-62 244.2 162 71.6
Psat1g161800 Pisum sativum HOM05D006827 ORTHO05D008725 4.2e-61 239.2 235 54.5
vmacro07963 Vaccinium macrocarpon HOM05D006827 ORTHO05D008725 1.6e-60 237.3 211 61.6
CsaV3_UNG230110 Cucumis sativus L. HOM05D006827 ORTHO05D008725 6.8e-59 231.9 149 77.2
CsaV3_6G028440 Cucumis sativus L. HOM05D006827 ORTHO05D008725 2.7e-52 209.9 255 50.2
Atru.chr4.3069 Acer truncatum HOM05D006827 ORTHO05D008725 1.4e-48 197.6 126 77.0
Hma1.2p1_0013F.1_g008250 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 2.3e-43 180.3 158 63.3
MD16G1149200 Malus domestica HOM05D006827 ORTHO05D008725 1.2e-39 167.9 171 53.2
arahy.Tifrunner.gnm1.ann1.25F6GK Arachis hypogaea HOM05D006827 ORTHO05D008725 4.4e-34 149.4 209 47.8
SEGI_22692 Sequoiadendron giganteum HOM05D006827 ORTHO05D008725 5.8e-34 149.1 150 56.7
AUR62032776 Chenopodium quinoa HOM05D006827 ORTHO05D008725 9.2e-32 141.7 87 79.3
Pp3c14_11410 Physcomitrium patens HOM05D006827 ORTHO05D008725 7.8e-31 138.7 159 42.1
Pp3c14_11414 Physcomitrium patens HOM05D006827 ORTHO05D008725 7.8e-31 138.7 159 42.1
Mapoly0005s0049 Marchantia polymorpha HOM05D006827 ORTHO05D008725 3.9e-30 136.3 162 43.8
Cpa.g.sc9.7 Carica papaya HOM05D001281 ORTHO05D008725 5.0e-30 136.0 183 51.9
SMO351G0308 Selaginella moellendorffii HOM05D006827 ORTHO05D008725 1.9e-24 117.5 95 51.6
CBR_g38487 Chara braunii HOM05D006827 ORTHO05D008725 1.6e-23 114.4 155 38.7
BcaC05g28821 Brassica carinata HOM05D006827 ORTHO05D023991 2.3e-19 100.5 97 55.7
Hma1.2p1_0013F.1_g008240 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 1.2e-18 98.2 59 79.7
Psat7g189800 Pisum sativum HOM05D006827 ORTHO05D008725 2.4e-16 90.5 77 57.1
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 3.0e-14 83.6 123 40.7
A05p32600 Brassica napus HOM05D006827 ORTHO05D008725 2.5e-13 80.5 65 58.5
BraA05t22084Z Brassica rapa HOM05D006827 ORTHO05D008725 2.5e-13 80.5 65 58.5
PRCOL_00004690 Prasinoderma coloniale HOM05D006827 ORTHO05D008725 5.6e-13 79.3 101 39.6
C05p49280 Brassica napus HOM05D006827 ORTHO05D008725 3.6e-12 76.6 87 48.3
Psat4g040600 Pisum sativum HOM05D006827 ORTHO05D008725 4.2e-08 63.2 169 32.5
VMungo1383G3461 Vigna mungo HOM05D006827 ORTHO05D008725 6.6e-06 55.8 91 39.6


User provided reference genes

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