Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 0.0e+00 1644.8 906 100.0
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 0.0e+00 1449.1 967 84.4
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 0.0e+00 1244.2 972 74.4
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 0.0e+00 1199.5 902 74.2
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 0.0e+00 1170.2 886 72.9
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 0.0e+00 1160.6 886 72.2
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.8e-269 932.9 897 60.4
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 6.8e-269 931.0 897 60.8
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 4.8e-262 908.3 900 59.7
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.1e-231 807.4 902 54.5
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.4e-229 799.7 697 63.8
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 7.2e-218 761.5 885 52.5
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.7e-214 750.4 920 51.8
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 4.1e-213 745.7 920 51.5
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.3e-207 726.1 905 51.2
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.7e-206 723.8 914 51.2
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 3.2e-202 709.5 886 49.8
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 2.4e-197 693.3 929 48.2
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 3.1e-197 693.0 894 47.9
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 9.1e-197 691.4 918 48.5
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 3.0e-192 676.4 953 46.3
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 5.7e-191 672.2 917 46.2
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 2.2e-190 670.2 926 46.8
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 4.1e-189 666.0 914 47.3
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 5.4e-189 665.6 960 46.2
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 9.2e-189 664.8 925 45.6
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 1.1e-186 657.9 924 47.4
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 9.5e-186 654.8 931 46.7
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 1.4e-184 651.0 917 47.1
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 4.0e-184 649.4 914 47.3
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 9.8e-183 644.8 922 45.6
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 8.3e-182 641.7 926 46.5
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 2.4e-181 640.2 930 46.3
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 5.4e-181 639.0 926 46.7
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 1.6e-180 637.5 928 46.2
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 2.5e-178 630.2 930 46.7
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 7.3e-178 628.6 924 44.8
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 1.6e-177 627.5 886 47.4
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 1.6e-177 627.5 924 44.8
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 3.6e-177 626.3 932 45.4
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.7e-177 625.9 899 45.1
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.8e-176 624.0 899 44.9
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.0e-176 622.9 899 44.7
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 8.9e-176 621.7 924 44.7
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 2.0e-175 620.5 909 47.0
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.6e-175 620.2 947 45.6
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 9.8e-175 618.2 920 44.8
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 1.6e-172 610.9 911 44.9
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.7e-172 610.1 924 44.6
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.7e-171 607.4 923 43.9
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 3.0e-171 606.7 903 45.0
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 1.1e-170 604.7 914 46.0
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.3e-170 603.2 927 43.8
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 9.5e-170 601.7 921 44.8
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.2e-169 601.3 931 43.8
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 1.6e-169 600.9 927 44.4
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 3.6e-169 599.7 923 44.1
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.5e-167 594.3 929 43.9
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 2.0e-167 594.0 916 44.5
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 9.8e-167 591.7 948 44.4
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 3.7e-166 589.7 891 45.0
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 4.9e-166 589.3 904 44.2
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 8.3e-166 588.6 695 54.0
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.1e-165 588.2 782 49.7
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 1.1e-165 588.2 923 43.3
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 1.4e-165 587.8 921 43.5
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 2.4e-165 587.0 917 44.3
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 2.4e-165 587.0 921 43.1
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 3.2e-165 586.6 901 44.5
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 1.1e-162 578.2 888 44.9
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 1.9e-162 577.4 917 43.2
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 3.3e-162 576.6 921 43.9
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.3e-162 576.6 902 43.6
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 9.5e-162 575.1 921 43.3
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.1e-161 573.9 929 43.6
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.2e-161 572.4 875 41.9
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 7.6e-159 565.5 898 44.7
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.7e-158 564.3 924 44.0
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 2.2e-158 563.9 905 43.5
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.9e-158 562.8 867 41.9
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.4e-157 561.2 877 41.4
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 5.4e-157 559.3 901 44.1
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 4.3e-154 549.7 893 43.9
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.1e-152 545.0 869 44.8
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 6.9e-152 542.3 926 42.7
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 8.9e-152 542.0 938 42.9
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 1.3e-150 538.1 887 44.2
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 2.2e-150 537.3 921 42.2
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 6.4e-150 535.8 940 42.2
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 9.3e-149 531.9 929 42.7
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 1.3e-147 528.1 875 44.7
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 1.5e-146 524.6 908 41.4
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.9e-146 524.2 888 42.6
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.6e-145 521.2 909 42.4
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 2.1e-145 520.8 896 42.2
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 3.6e-145 520.0 945 41.8
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 1.1e-144 518.5 738 45.8
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 2.4e-141 507.3 917 41.9
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 4.2e-141 506.5 900 41.4
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 4.3e-138 496.5 871 42.6
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 2.1e-137 494.2 809 42.0
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 8.1e-137 492.3 592 51.5
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 8.1e-137 492.3 617 47.8
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.4e-136 491.5 884 41.1
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 2.4e-136 490.7 898 41.9
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 2.4e-136 490.7 903 40.4
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 3.1e-136 490.3 989 38.6
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 1.5e-135 488.0 898 41.6
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 5.8e-135 486.1 901 41.8
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 2.9e-134 483.8 747 43.1
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 1.2e-132 478.4 886 41.5
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 1.8e-131 474.6 858 41.6
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.5e-130 470.7 674 47.5
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.3e-129 468.4 881 40.4
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 1.6e-129 468.0 860 41.7
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.6e-127 460.7 922 37.6
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 2.6e-127 460.7 848 41.2
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 5.5e-125 453.0 723 43.2
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 1.2e-124 451.8 897 40.9
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 1.6e-124 451.4 896 40.7
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 3.5e-124 450.3 883 40.0
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 2.3e-123 447.6 895 40.2
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 3.0e-123 447.2 895 40.4
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 6.7e-123 446.0 850 40.5
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 6.7e-123 446.0 850 40.5
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.1e-122 445.3 901 38.5
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 1.5e-122 444.9 895 40.0
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.5e-122 444.9 846 40.5
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 7.4e-122 442.6 846 40.2
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 2.0e-119 434.5 885 39.1
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.7e-116 424.1 930 38.0
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 4.6e-116 423.3 864 38.8
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 8.7e-115 419.1 711 39.4
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 5.3e-112 409.8 682 43.0
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 1.5e-111 408.3 739 41.5
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 1.0e-110 405.6 448 54.0
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 3.3e-106 390.6 752 40.0
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 9.1e-104 382.5 730 39.7
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.3e-102 378.6 704 42.2
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.5e-101 374.4 574 43.0
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 1.1e-98 365.5 360 59.4
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 3.1e-96 357.5 795 35.2
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 5.9e-95 353.2 686 38.6
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 8.2e-89 332.8 596 42.3
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.6e-87 328.6 491 45.4
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 1.1e-85 322.4 477 44.7
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 4.1e-80 303.9 755 33.9
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 7.0e-80 303.1 759 34.3
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.8e-75 288.5 788 32.6
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 8.8e-75 286.2 726 35.0
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.6e-68 265.4 829 31.7
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.4e-64 251.5 302 49.7
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 5.9e-63 246.9 236 56.4
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.6e-62 243.4 430 40.9
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 7.5e-58 229.9 422 41.5
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 1.7e-57 228.8 357 42.3
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 2.1e-52 211.8 718 30.6
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 6.8e-51 206.8 208 55.3
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 2.7e-47 194.9 375 42.1
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 5.6e-45 187.2 493 30.0
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 5.2e-43 180.6 269 42.0
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 2.3e-38 165.2 196 52.0
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 6.6e-38 163.7 539 30.2
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.6e-34 151.8 160 52.5
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 1.0e-30 139.8 138 55.1
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.3e-30 139.4 231 41.6
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.6e-28 131.3 192 42.2
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 9.9e-26 123.2 121 55.4
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.8e-25 121.3 125 52.8
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.5e-23 114.8 278 35.6
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 7.9e-23 113.6 63 74.6
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 1.8e-22 112.5 152 45.4
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 1.8e-22 112.5 263 39.2
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 2.6e-18 98.6 162 35.8
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.5e-18 97.8 98 55.1
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 3.4e-10 71.6 42 76.2
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 5.8e-10 70.9 85 60.0
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 2.2e-09 68.9 42 64.3
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 3.8e-09 68.2 89 39.3
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.8e-09 68.2 119 40.3
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.8e-09 68.2 73 45.2


User provided reference genes

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