Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002380g0020 Nicotiana tabacum HOM05D008034 ORTHO05D010051 5.4e-104 380.9 184 100.0
Nitab4.5_0007786g0020 Nicotiana tabacum HOM05D008034 ORTHO05D010051 5.7e-98 360.9 184 94.6
CAN.G84.9 Capsicum annuum HOM05D008034 ORTHO05D010051 1.5e-93 346.3 184 89.1
Solyc11g072765.1 Solanum lycopersicum HOM05D008034 ORTHO05D010051 3.4e-82 308.5 188 77.7
Hma1.2p1_0035F.1_g021690 Hydrangea macrophylla HOM05D008034 ORTHO05D010051 2.1e-68 262.7 147 79.6
Manes.11G137800 Manihot esculenta HOM05D008034 ORTHO05D010051 2.8e-68 262.3 148 77.7
CSS0025126 Camellia sinensis var. sinensis HOM05D008034 ORTHO05D010051 6.2e-68 261.2 147 81.6
QL01p035245 Quercus lobata HOM05D008034 ORTHO05D010051 1.1e-67 260.4 148 79.1
Actinidia37272 Actinidia chinensis HOM05D008034 ORTHO05D010051 1.4e-67 260.0 169 72.8
Actinidia27676 Actinidia chinensis HOM05D008034 ORTHO05D010051 3.4e-66 255.4 169 72.8
TWI75G0515 Tripterygium wilfordii HOM05D008034 ORTHO05D010051 1.3e-65 253.4 171 69.6
Atru.chr3.3772 Acer truncatum HOM05D008034 ORTHO05D010051 3.8e-65 251.9 177 69.5
Prupe.6G089000 Prunus persica HOM05D008034 ORTHO05D010051 4.9e-65 251.5 150 76.0
Psat3g140960 Pisum sativum HOM05D008034 ORTHO05D010051 6.4e-65 251.1 148 76.4
Gohir.A07G094200 Gossypium hirsutum HOM05D008034 ORTHO05D010051 1.1e-64 250.4 147 74.1
TAR623G1523 Trochodendron aralioides HOM05D008034 ORTHO05D010051 1.1e-64 250.4 190 63.2
Gohir.D07G098700 Gossypium hirsutum HOM05D008034 ORTHO05D010051 2.4e-64 249.2 147 73.5
Gorai.001G106200 Gossypium raimondii HOM05D008034 ORTHO05D010051 2.4e-64 249.2 147 73.5
Thecc.09G333100 Theobroma cacao HOM05D008034 ORTHO05D010051 2.4e-64 249.2 148 75.7
FvH4_3g34350 Fragaria vesca HOM05D008034 ORTHO05D010051 5.4e-64 248.1 149 75.2
Lsat_1_v5_gn_9_21900 Lactuca sativa HOM05D008034 ORTHO05D010051 5.4e-64 248.1 181 63.5
Phvul.008G100300 Phaseolus vulgaris HOM05D008034 ORTHO05D010051 5.4e-64 248.1 146 75.3
Ciclev10029356m.g Citrus clementina HOM05D008034 ORTHO05D010051 7.1e-64 247.7 150 76.0
Glyma.18G177500 Glycine max HOM05D008034 ORTHO05D010051 7.1e-64 247.7 187 63.6
Rhsim13G0089800 Rhododendron simsii HOM05D001089 ORTHO05D000920 7.1e-64 247.7 148 75.0
Lalb_Chr03g0035081 Lupinus albus HOM05D008034 ORTHO05D010051 9.3e-64 247.3 182 64.8
Medtr7g060450 Medicago truncatula HOM05D008034 ORTHO05D010051 1.2e-63 246.9 169 69.2
Lalb_Chr03g0042121 Lupinus albus HOM05D008034 ORTHO05D010051 2.1e-63 246.1 182 63.7
RhsimUnG0139800 Rhododendron simsii HOM05D001089 ORTHO05D000920 2.7e-63 245.7 148 74.3
GSVIVG01025076001 Vitis vinifera HOM05D008034 ORTHO05D010051 2.7e-63 245.7 175 64.0
ECA247G3899 Erigeron canadensis HOM05D008034 ORTHO05D010051 3.5e-63 245.4 184 62.0
ClCG02G020510 Citrullus lanatus HOM05D008034 ORTHO05D010051 6.0e-63 244.6 170 67.6
HanXRQChr08g0230621 Helianthus annuus HOM05D008034 ORTHO05D010051 6.0e-63 244.6 184 60.9
Duzib170G0117 Durio zibethinus HOM05D008034 ORTHO05D010051 1.7e-62 243.0 173 64.7
arahy.Tifrunner.gnm1.ann1.JRZ5DE Arachis hypogaea HOM05D008034 ORTHO05D010051 2.3e-62 242.7 149 73.2
arahy.Tifrunner.gnm1.ann1.YB7TH1 Arachis hypogaea HOM05D008034 ORTHO05D010051 2.3e-62 242.7 149 73.8
Cpa.g.sc139.12 Carica papaya HOM05D008034 ORTHO05D010051 2.3e-62 242.7 174 64.9
CiPaw.13G103300 Carya illinoinensis HOM05D008034 ORTHO05D010051 5.1e-62 241.5 147 72.8
COL.COLO4_18407 Corchorus olitorius HOM05D008034 ORTHO05D010051 6.6e-62 241.1 183 63.4
Haze_23982 Corylus avellana HOM05D008034 ORTHO05D010051 2.5e-61 239.2 147 72.1
CsaV3_6G021950 Cucumis sativus L. HOM05D008034 ORTHO05D010051 3.3e-61 238.8 167 65.9
MELO3C025715.2 Cucumis melo HOM05D008034 ORTHO05D010051 4.3e-61 238.4 142 74.6
Cfa011409 Carpinus fangiana HOM05D008034 ORTHO05D010051 6.2e-60 234.6 149 70.5
Aqoxy4G03114 Aquilegia oxysepala HOM05D008034 ORTHO05D010051 6.9e-59 231.1 179 58.7
Eucgr.B02437 Eucalyptus grandis HOM05D008034 ORTHO05D010051 4.4e-58 228.4 187 60.4
FAN11G2200 Fragaria x ananassa HOM05D008034 ORTHO05D010051 4.4e-58 228.4 136 77.2
Sed0016706 Sechium edule HOM05D008034 ORTHO05D010051 3.8e-57 225.3 160 65.6
Glyma.08G359000 Glycine max HOM05D008034 ORTHO05D010051 8.4e-57 224.2 148 69.6
Nn2g10576 Nelumbo nucifera HOM05D008034 ORTHO05D010051 1.6e-55 219.9 173 60.7
PSO724G0148 Papaver somniferum HOM05D008034 ORTHO05D010051 2.3e-54 216.1 185 56.8
CANSAT54G0614 Cannabis sativa HOM05D008034 ORTHO05D010051 8.7e-54 214.2 179 57.0
PSO729G0256 Papaver somniferum HOM05D008034 ORTHO05D010051 1.5e-53 213.4 185 55.7
EL10Ac7g15930 Beta vulgaris HOM05D008034 ORTHO05D010051 8.1e-52 207.6 183 53.6
VMungo1383G3175 Vigna mungo HOM05D008034 ORTHO05D010051 8.1e-52 207.6 177 56.5
ATR0594G086 Amborella trichopoda HOM05D008034 ORTHO05D010051 2.4e-51 206.1 146 63.0
MBI14_g16339_MAGBIO Magnolia biondii HOM05D008034 ORTHO05D010051 9.0e-51 204.1 172 54.7
Ah.15g096410 Amaranthus hybridus HOM05D008034 ORTHO05D010051 1.5e-50 203.4 144 61.1
AUR62009660 Chenopodium quinoa HOM05D008034 ORTHO05D010051 8.4e-49 197.6 183 50.8
PGR102G1024 Punica granatum HOM05D008034 ORTHO05D010051 3.5e-47 192.2 176 54.5
TPR.G23264 Trifolium pratense HOM05D008034 ORTHO05D010051 9.6e-45 184.1 145 61.4
PSO416G0003 Papaver somniferum HOM05D008034 ORTHO05D010051 3.7e-44 182.2 153 56.9
Dinv06338 Davidia involucrata HOM05D008034 ORTHO05D010051 4.9e-41 171.8 103 69.9
Sc21g0005330 Simmondsia chinensis HOM05D008034 ORTHO05D010051 9.3e-40 167.5 112 62.5
Sopen11g030440 Solanum pennellii HOM05D008034 ORTHO05D010051 8.7e-38 161.0 80 86.2
AUR62001862 Chenopodium quinoa HOM05D008034 ORTHO05D010051 1.8e-35 153.3 164 46.3
SEGI_07630 Sequoiadendron giganteum HOM05D008034 ORTHO05D010051 1.3e-25 120.6 166 38.0
ATR0594G007 Amborella trichopoda HOM05D001120 ORTHO05D010051 2.1e-23 113.2 141 41.8
Prupe.2G222000 Prunus persica HOM05D001120 ORTHO05D010051 2.3e-22 109.8 171 38.0
RcHm_v2.0_Chr1g0364691 Rosa chinensis HOM05D008034 ORTHO05D010051 2.3e-22 109.8 165 37.6
FAN06G2736 Fragaria x ananassa HOM05D001787 ORTHO05D007379 3.0e-22 109.4 152 38.2
FAN06G3907 Fragaria x ananassa HOM05D001787 ORTHO05D007379 3.0e-22 109.4 165 36.4
SEGI_26238 Sequoiadendron giganteum HOM05D008034 ORTHO05D010051 3.0e-22 109.4 148 40.5
SEGI_39089 Sequoiadendron giganteum HOM05D008034 ORTHO05D010051 3.0e-22 109.4 148 40.5
FvH4_7g20661 Fragaria vesca HOM05D008034 ORTHO05D010051 5.1e-22 108.6 151 38.4
FAN01G1155 Fragaria x ananassa HOM05D001787 ORTHO05D007379 6.7e-22 108.2 165 36.4
FAN01G1685 Fragaria x ananassa HOM05D001787 ORTHO05D007379 6.7e-22 108.2 165 36.4
FAN10G0756 Fragaria x ananassa HOM05D001787 ORTHO05D007379 6.7e-22 108.2 165 36.4
MD07G1183300 Malus domestica HOM05D008034 ORTHO05D010051 8.8e-22 107.8 153 39.2
FAN03G1672 Fragaria x ananassa HOM05D001787 ORTHO05D007379 1.1e-21 107.5 152 38.2
Potri.010G214400 Populus trichocarpa HOM05D008034 ORTHO05D010051 2.0e-21 106.7 177 35.6
Cpa.g.sc10.57 Carica papaya HOM05D001787 ORTHO05D007379 2.5e-21 106.3 137 40.9
MBI14_g46136_MAGBIO Magnolia biondii HOM05D001120 ORTHO05D002447 3.1e-19 99.4 171 33.9
TAR369G0105 Trochodendron aralioides HOM05D008034 ORTHO05D010051 5.3e-19 98.6 186 32.3
Nn2g10579 Nelumbo nucifera HOM05D001120 ORTHO05D010051 4.5e-18 95.5 165 34.5
Manes.07G106000 Manihot esculenta HOM05D008034 ORTHO05D002447 8.5e-17 91.3 170 33.5
Hma1.2p1_0018F.1_g012390 Hydrangea macrophylla HOM05D001120 ORTHO05D002447 1.4e-16 90.5 133 36.1
Actinidia21986 Actinidia chinensis HOM05D001120 ORTHO05D002447 1.9e-16 90.1 177 32.8
Medtr1g102420 Medicago truncatula HOM05D001120 ORTHO05D002447 2.5e-16 89.7 144 31.2
Actinidia40472 Actinidia chinensis HOM05D001120 ORTHO05D002447 7.2e-16 88.2 177 32.2
Glyma.10G242000 Glycine max HOM05D001120 ORTHO05D002447 9.4e-16 87.8 184 31.5
Potri.006G069800 Populus trichocarpa HOM05D001120 ORTHO05D002447 1.2e-15 87.4 168 31.5
Cpa.g.sc75.26 Carica papaya HOM05D001120 ORTHO05D002447 1.6e-15 87.0 142 33.8
SEGI_17058 Sequoiadendron giganteum HOM05D001120 ORTHO05D002447 2.7e-15 86.3 184 28.3
Duzib192G0269 Durio zibethinus HOM05D001120 ORTHO05D002447 3.6e-15 85.9 165 32.1
PGR042G1649 Punica granatum HOM05D001120 ORTHO05D002447 3.6e-15 85.9 177 27.7
Lalb_Chr06g0160841 Lupinus albus HOM05D001120 ORTHO05D002447 6.1e-15 85.1 187 29.9
Psat6g203680 Pisum sativum HOM05D001120 ORTHO05D002447 6.1e-15 85.1 144 30.6
Manes.14G132300 Manihot esculenta HOM05D001120 ORTHO05D002447 7.9e-15 84.7 169 29.6
Aqoxy7G03703 Aquilegia oxysepala HOM05D001120 ORTHO05D002447 1.0e-14 84.3 171 31.0
Ca_10832_v3 Cicer arietinum L. HOM05D001120 ORTHO05D002447 1.0e-14 84.3 144 29.9
PGSC0003DMG400023797 Solanum tuberosum HOM05D001120 ORTHO05D002447 1.4e-14 84.0 182 31.9
TPR.G26127 Trifolium pratense HOM05D001120 ORTHO05D002447 1.4e-14 84.0 144 29.9
Lj2g0018359 Lotus japonicus HOM05D001120 ORTHO05D002447 1.8e-14 83.6 141 32.6
Haze_16964 Corylus avellana HOM05D008034 ORTHO05D010051 2.3e-14 83.2 177 27.7
Sopen01g046430 Solanum pennellii HOM05D001120 ORTHO05D002447 3.0e-14 82.8 183 30.6
CiPaw.03G098300 Carya illinoinensis HOM05D001120 ORTHO05D002447 3.9e-14 82.4 172 29.1
Sc18g0000610 Simmondsia chinensis HOM05D001120 ORTHO05D002447 5.1e-14 82.0 131 33.6
PGSC0003DMG400023798 Solanum tuberosum HOM05D001120 ORTHO05D002447 6.7e-14 81.6 162 30.9
MBI04_g38656_MAGBIO Magnolia biondii HOM05D001120 ORTHO05D002447 8.8e-14 81.3 131 34.4
Solyc01g104020.2 Solanum lycopersicum HOM05D001120 ORTHO05D002447 8.8e-14 81.3 178 30.3
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 8.8e-14 81.3 133 33.1
TAR645G0006 Trochodendron aralioides HOM05D001120 ORTHO05D002447 1.1e-13 80.9 177 28.8
CAN.G798.15 Capsicum annuum HOM05D001120 ORTHO05D002447 1.5e-13 80.5 182 30.2
CAN.G798.16 Capsicum annuum HOM05D001120 ORTHO05D002447 1.5e-13 80.5 137 32.8
Phvul.007G063600 Phaseolus vulgaris HOM05D001120 ORTHO05D002447 1.5e-13 80.5 174 29.9
Sabra15G0145300 Salix brachista HOM05D001120 ORTHO05D002447 1.5e-13 80.5 146 30.8
VMungo0464G0837 Vigna mungo HOM05D001120 ORTHO05D002447 2.0e-13 80.1 178 30.3
CDE06G2009 Ceratophyllum demersum HOM05D001120 ORTHO05D002447 3.3e-13 79.3 132 32.6
Potri.015G132700 Populus trichocarpa HOM05D001120 ORTHO05D002447 4.4e-13 79.0 146 30.1
Sabra12G0098500 Salix brachista HOM05D001120 ORTHO05D002447 4.4e-13 79.0 146 29.5
TAR383G0469 Trochodendron aralioides HOM05D002280 ORTHO05D002322 4.4e-13 79.0 131 33.6
MD00G1023000 Malus domestica HOM05D001120 ORTHO05D002447 7.4e-13 78.2 131 29.0
Peaxi162Scf00148g00114 Petunia axillaris HOM05D001120 ORTHO05D002447 7.4e-13 78.2 131 35.1
Sopen01g046420 Solanum pennellii HOM05D001120 ORTHO05D002447 7.4e-13 78.2 166 28.3
PSO339G5748 Papaver somniferum HOM05D001120 ORTHO05D002447 9.7e-13 77.8 134 31.3
Phvul.004G125300 Phaseolus vulgaris HOM05D001120 ORTHO05D002447 9.7e-13 77.8 154 30.5
Cc04_g04230 Coffea canephora HOM05D001120 ORTHO05D002447 1.3e-12 77.4 135 32.6
PSO455G0274 Papaver somniferum HOM05D001120 ORTHO05D002447 1.7e-12 77.0 131 32.1
Os01g0172800 Oryza sativa ssp. japonica HOM05D001120 ORTHO05D002447 2.2e-12 76.6 131 35.9
PSO170G1098 Papaver somniferum HOM05D001120 ORTHO05D002447 2.2e-12 76.6 131 32.1
Medtr0050s0240 Medicago truncatula HOM05D001120 ORTHO05D002447 2.8e-12 76.3 142 31.0
Psat1g115720 Pisum sativum HOM05D001120 ORTHO05D002447 2.8e-12 76.3 138 31.2
TAR383G0395 Trochodendron aralioides HOM05D001120 ORTHO05D002447 2.8e-12 76.3 167 30.5
Aqoxy7G02184 Aquilegia oxysepala HOM05D001120 ORTHO05D002447 3.7e-12 75.9 135 30.4
PSO384G0990 Papaver somniferum HOM05D001120 ORTHO05D002447 4.8e-12 75.5 139 30.2
Sp6g35710 Schrenkiella parvula HOM05D001120 ORTHO05D002447 1.8e-11 73.6 142 31.0
CsaV3_4G001510 Cucumis sativus L. HOM05D001120 ORTHO05D002447 2.4e-11 73.2 177 27.7
Os05g0171200 Oryza sativa ssp. japonica HOM05D001120 ORTHO05D002447 3.1e-11 72.8 144 31.9
Sed0000479 Sechium edule HOM05D001120 ORTHO05D002447 3.1e-11 72.8 163 26.4
ClCG07G012680 Citrullus lanatus HOM05D001120 ORTHO05D002447 4.1e-11 72.4 131 29.8
SEGI_18751 Sequoiadendron giganteum HOM05D018424 ORTHO05D010051 5.3e-11 72.0 164 27.4
arahy.Tifrunner.gnm1.ann1.LIRE4J Arachis hypogaea HOM05D001120 ORTHO05D002447 7.0e-11 71.6 185 27.6
arahy.Tifrunner.gnm1.ann1.LMQR93 Arachis hypogaea HOM05D001120 ORTHO05D002447 7.0e-11 71.6 185 27.6
MELO3C017889.2 Cucumis melo HOM05D001120 ORTHO05D002447 7.0e-11 71.6 131 29.0
arahy.Tifrunner.gnm1.ann1.1FS32P Arachis hypogaea HOM05D001120 ORTHO05D002447 9.1e-11 71.2 173 27.2
arahy.Tifrunner.gnm1.ann1.3J2MYH Arachis hypogaea HOM05D001120 ORTHO05D002447 9.1e-11 71.2 173 27.2
BcaC06g32466 Brassica carinata HOM05D001120 ORTHO05D002447 1.6e-10 70.5 137 30.7
Lalb_Chr19g0131251 Lupinus albus HOM05D001120 ORTHO05D002447 1.6e-10 70.5 184 29.3
CARHR205960 Cardamine hirsuta HOM05D001120 ORTHO05D002447 4.5e-10 68.9 176 29.0
MBI14_g16338_MAGBIO Magnolia biondii HOM05D008034 ORTHO05D002447 4.5e-10 68.9 163 30.1
CAN.G407.95 Capsicum annuum HOM05D001120 ORTHO05D002447 7.7e-10 68.2 134 29.1
BraA10t44942Z Brassica rapa HOM05D001120 ORTHO05D002447 1.0e-09 67.8 164 28.7
THA.LOC104824839 Tarenaya hassleriana HOM05D001120 ORTHO05D002447 1.0e-09 67.8 134 29.9
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.3e-09 67.4 140 28.6
Peaxi162Scf00332g00768 Petunia axillaris HOM05D001120 ORTHO05D002447 1.3e-09 67.4 149 28.2
Thhalv10015930m.g Eutrema salsugineum HOM05D001120 ORTHO05D002447 1.7e-09 67.0 133 30.8
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.7e-09 67.0 135 28.9
TPR.G33098 Trifolium pratense HOM05D001120 ORTHO05D002447 1.7e-09 67.0 92 37.0
SEGI_22870 Sequoiadendron giganteum HOM05D018424 ORTHO05D010051 2.2e-09 66.6 170 25.9
A10p28950 Brassica napus HOM05D001120 ORTHO05D002447 6.5e-09 65.1 172 29.1
Carub.0006s0612 Capsella rubella HOM05D001120 ORTHO05D002447 6.5e-09 65.1 176 26.1
PGSC0003DMG400000634 Solanum tuberosum HOM05D001120 ORTHO05D002447 6.5e-09 65.1 146 27.4
BcaC06g32465 Brassica carinata HOM05D001120 ORTHO05D002447 1.1e-08 64.3 137 29.2
Solyc03g116590.3 Solanum lycopersicum HOM05D001120 ORTHO05D002447 1.1e-08 64.3 135 27.4
Sopen03g035500 Solanum pennellii HOM05D001120 ORTHO05D002447 1.1e-08 64.3 135 27.4
AL6G17410 Arabidopsis lyrata HOM05D001120 ORTHO05D002447 1.5e-08 63.9 177 27.7
AT5G07190 Arabidopsis thaliana HOM05D001120 ORTHO05D002447 1.5e-08 63.9 179 27.4
C09p69300 Brassica napus HOM05D001120 ORTHO05D002447 1.5e-08 63.9 168 27.4
BolC9t59674H Brassica oleracea HOM05D001120 ORTHO05D002447 1.5e-08 63.9 168 27.4
Migut.K00480 Erythranthe guttata HOM05D001120 ORTHO05D002447 5.5e-08 62.0 140 25.7
SEGI_12405 Sequoiadendron giganteum HOM05D018424 ORTHO05D010051 5.5e-08 62.0 147 25.2
Potri.012G130800 Populus trichocarpa HOM05D001120 ORTHO05D002447 7.2e-08 61.6 131 29.0
MELO3C006843.2 Cucumis melo HOM05D001120 ORTHO05D002447 1.2e-07 60.8 159 23.3
CsaV3_3G016450 Cucumis sativus L. HOM05D001120 ORTHO05D002447 1.2e-07 60.8 137 25.5
Potri.015G132900 Populus trichocarpa HOM05D001120 ORTHO05D002447 1.0e-06 57.8 138 28.3
Psat5g300960 Pisum sativum HOM05D001120 ORTHO05D002447 2.3e-06 56.6 132 25.8
Medtr2g103330 Medicago truncatula HOM05D001120 ORTHO05D002447 5.2e-06 55.5 96 34.4


User provided reference genes

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