Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 0.0e+00 1105.1 567 100.0
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 2.9e-294 1014.6 567 91.5
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 1.9e-293 1011.9 567 91.4
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 3.4e-290 1001.1 569 90.5
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 6.2e-284 980.3 590 89.0
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 2.1e-271 938.7 562 87.0
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 2.3e-262 908.7 565 82.3
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 6.4e-257 890.6 558 81.9
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 1.2e-255 886.3 569 78.4
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 5.1e-254 880.9 571 78.1
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 6.6e-254 880.6 562 80.1
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 1.1e-253 879.8 566 79.3
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.5e-253 878.6 567 77.1
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 3.3e-253 878.2 568 77.6
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 4.3e-253 877.9 568 78.2
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 3.1e-251 871.7 564 79.1
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 2.2e-249 865.5 567 78.5
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 2.4e-248 862.1 567 77.6
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.4e-248 862.1 568 76.8
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 4.2e-248 861.3 569 77.0
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 5.4e-248 860.9 562 77.8
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 1.3e-244 849.7 571 76.4
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 3.7e-244 848.2 567 76.2
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 3.7e-244 848.2 585 75.9
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 1.1e-243 846.7 566 75.8
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 1.4e-243 846.3 570 75.4
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 1.3e-241 839.7 563 75.8
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 6.4e-241 837.4 547 77.1
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 8.4e-241 837.0 567 74.4
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.4e-240 836.3 574 74.9
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 3.2e-240 835.1 574 74.7
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 5.5e-240 834.3 560 75.4
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 1.2e-239 833.2 567 74.4
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 2.7e-239 832.0 551 76.6
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 1.0e-238 830.1 567 74.4
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 1.0e-238 830.1 558 76.2
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 1.0e-238 830.1 550 77.1
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 3.0e-238 828.6 562 74.7
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 3.9e-238 828.2 570 75.1
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 1.1e-237 826.6 566 75.1
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 1.9e-237 825.9 562 74.6
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 2.5e-237 825.5 558 74.9
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 6.2e-236 820.8 564 75.2
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 1.4e-235 819.7 564 73.6
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.4e-235 819.7 583 72.9
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 1.2e-234 816.6 564 74.1
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 1.5e-234 816.2 562 74.4
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 1.5e-234 816.2 573 73.1
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 2.0e-234 815.8 566 74.0
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 3.4e-234 815.1 562 73.7
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 5.8e-234 814.3 568 73.1
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 5.5e-232 807.7 611 71.5
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 4.6e-231 804.7 546 74.7
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 6.7e-230 800.8 622 68.0
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 4.3e-229 798.1 548 73.7
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 5.7e-229 797.7 572 73.4
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 6.3e-228 794.3 553 73.4
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 2.4e-227 792.3 566 72.4
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 2.0e-226 789.3 565 71.5
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 2.2e-225 785.8 565 71.2
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 2.9e-225 785.4 567 72.1
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 5.0e-225 784.6 550 72.5
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 1.4e-224 783.1 576 69.3
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 4.2e-224 781.6 568 72.2
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 4.2e-224 781.6 565 71.7
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 5.5e-224 781.2 568 71.7
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 1.2e-223 780.0 567 71.3
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 1.6e-223 779.6 568 72.0
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 2.7e-223 778.9 567 70.5
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 6.1e-223 777.7 567 71.8
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 1.0e-222 776.9 567 71.6
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 2.3e-222 775.8 567 71.6
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 8.8e-222 773.9 567 71.3
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 9.7e-221 770.4 536 75.7
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 7.7e-218 760.8 563 69.6
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 1.4e-216 756.5 583 68.4
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 4.2e-216 755.0 562 69.4
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 9.4e-216 753.8 563 69.1
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 4.7e-215 751.5 549 71.8
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 6.7e-214 747.7 577 67.6
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 2.0e-213 746.1 589 67.2
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 9.7e-213 743.8 608 66.9
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.2e-212 742.7 564 68.4
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 1.1e-211 740.3 553 70.2
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 5.9e-210 734.6 570 65.8
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 2.1e-207 726.1 582 67.5
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 1.6e-191 673.3 510 67.6
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 4.1e-187 658.7 429 77.2
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 1.2e-178 630.6 688 53.8
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 6.6e-169 598.2 424 71.7
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 2.4e-163 579.7 568 55.1
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 3.5e-162 575.9 567 54.1
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.5e-152 543.1 562 54.4
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 7.8e-146 521.5 570 49.5
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 1.1e-142 511.1 558 52.3
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 1.3e-137 494.2 274 91.2
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 3.1e-118 429.9 319 71.2
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 4.7e-98 362.8 275 68.4
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 6.3e-95 352.4 199 88.9
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 2.0e-93 347.4 318 56.9
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 1.0e-92 345.1 220 79.1
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 1.8e-57 228.0 166 70.5
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 1.5e-56 224.9 296 50.7
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 2.0e-48 198.0 240 45.4
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 6.2e-42 176.4 142 59.9
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 5.4e-38 163.3 120 70.8
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 1.2e-37 162.2 118 70.3
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.5e-35 155.2 120 68.3
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 1.1e-33 149.1 184 50.5
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 1.5e-32 145.2 108 70.4
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 5.1e-28 130.2 131 52.7
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 1.8e-25 121.7 85 72.9
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 9.3e-22 109.4 121 49.6
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.3e-18 99.0 179 39.7
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 7.6e-16 89.7 82 58.5
Cc02_g13940 Coffea canephora HOM05D006362 ORTHO05D008295 2.9e-15 87.8 56 83.9
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.1e-14 85.9 192 34.4
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.4e-14 85.5 141 43.3
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 2.1e-10 71.6 45 68.9
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 1.8e-09 68.6 96 40.6
Lsat_1_v5_gn_3_32440 Lactuca sativa HOM05D006362 ORTHO05D228842 4.5e-08 63.9 51 66.7
Cpa.g.sc131.91 Carica papaya HOM05D006362 ORTHO05D116658 5.8e-08 63.5 37 83.8
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.3e-07 62.4 175 33.7


User provided reference genes

Program Settings