Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 0.0e+00 1237.6 630 100.0
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 4.4e-283 977.6 699 75.5
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 4.5e-203 711.8 831 52.2
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 1.7e-202 709.9 831 52.2
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 1.9e-201 706.4 833 52.7
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.8e-199 699.9 829 51.4
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.1e-152 543.5 845 42.1
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 4.8e-144 515.8 840 40.5
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 5.5e-140 502.3 830 39.9
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 7.1e-140 501.9 833 40.0
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.6e-139 500.7 830 40.0
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 3.0e-130 469.9 821 39.2
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 2.5e-124 450.3 716 40.6
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 2.0e-121 440.7 844 37.8
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 4.7e-115 419.5 846 36.5
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 4.8e-112 409.5 829 37.0
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.1e-103 380.2 828 34.8
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 2.0e-102 377.5 832 34.9
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 2.9e-101 373.6 792 34.7
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 9.4e-100 368.6 653 40.6
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.4e-98 364.8 782 34.0
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 2.6e-97 360.5 818 33.0
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 9.8e-97 358.6 814 34.5
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 1.4e-95 354.8 807 34.4
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 7.0e-95 352.4 821 32.2
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 1.2e-86 325.1 847 32.9
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.0e-86 324.3 822 32.4
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 2.9e-80 303.9 845 31.1
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 1.8e-79 301.2 769 32.1
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 4.6e-78 296.6 789 32.6
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 2.1e-75 287.7 783 30.4
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 3.6e-75 287.0 819 30.6
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 6.2e-75 286.2 819 30.0
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 6.2e-75 286.2 819 30.0
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 5.2e-74 283.1 813 29.9
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 4.1e-71 273.5 809 29.3
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 7.0e-71 272.7 845 28.9
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 2.0e-70 271.2 806 30.4
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 6.0e-70 269.6 764 30.6
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 3.0e-69 267.3 819 30.2
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 6.6e-69 266.2 430 43.7
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 4.3e-68 263.5 697 30.1
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 4.3e-68 263.5 784 28.8
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 1.6e-67 261.5 784 29.0
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 1.6e-67 261.5 786 29.9
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 1.6e-67 261.5 801 29.5
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 3.6e-67 260.4 785 29.9
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 1.1e-66 258.8 840 27.3
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 1.8e-66 258.1 793 30.1
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 2.3e-66 257.7 852 27.6
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.1e-66 257.3 861 28.0
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 6.8e-66 256.1 858 28.0
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.2e-65 255.4 847 28.1
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 9.8e-65 252.3 826 29.9
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 2.9e-64 250.8 807 28.1
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 1.4e-63 248.4 781 27.9
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 1.4e-63 248.4 809 29.4
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 7.8e-62 242.7 785 28.4
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 1.0e-61 242.3 806 28.4
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 5.1e-61 240.0 823 27.5
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 4.3e-60 236.9 873 26.0
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 9.5e-60 235.7 790 29.9
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 3.6e-59 233.8 837 26.5
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 2.3e-58 231.1 784 27.4
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.5e-57 228.4 451 39.7
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 1.5e-57 228.4 358 41.3
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 5.8e-57 226.5 795 26.9
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 7.6e-57 226.1 791 27.4
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 1.7e-56 224.9 826 27.8
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 4.9e-56 223.4 790 27.2
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 9.2e-55 219.2 819 27.2
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.7e-54 217.6 177 72.9
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.5e-52 211.8 783 26.9
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 1.5e-52 211.8 436 35.3
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 7.3e-52 209.5 429 36.8
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 2.8e-51 207.6 762 27.7
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 6.9e-50 203.0 427 35.4
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 6.9e-50 203.0 784 27.8
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.0e-49 201.4 823 25.6
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.9e-48 197.6 622 29.6
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 4.9e-48 196.8 787 27.8
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 1.4e-47 195.3 419 34.8
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 2.7e-46 191.0 732 28.4
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 2.7e-46 191.0 618 29.6
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 4.6e-46 190.3 793 27.6
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 3.0e-45 187.6 413 35.6
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.3e-43 182.2 417 34.3
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 2.1e-43 181.4 822 24.6
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.8e-43 181.0 417 34.5
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 6.2e-43 179.9 688 27.9
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 6.2e-43 179.9 416 33.7
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 1.1e-42 179.1 417 33.6
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.1e-42 179.1 417 33.6
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 2.9e-40 171.0 758 25.7
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 3.8e-40 170.6 439 32.3
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 3.2e-39 167.5 810 24.4
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 4.2e-39 167.2 400 31.0
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.1e-38 164.9 696 25.7
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 1.3e-37 162.2 349 36.1
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.6e-35 155.2 222 43.2
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 3.6e-35 154.1 832 23.8
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 8.1e-35 152.9 584 27.9
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 5.3e-34 150.2 224 40.2
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 1.2e-33 149.1 798 24.4
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 2.6e-33 147.9 601 25.5
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.3e-32 145.6 204 39.7
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.2e-30 139.0 278 36.3
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 2.7e-30 137.9 639 24.6
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 6.7e-29 133.3 247 32.8
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 2.1e-27 128.3 648 24.7
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 3.7e-27 127.5 198 42.9
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 2.4e-26 124.8 177 38.4
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 4.0e-26 124.0 277 33.6
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 5.3e-26 123.6 306 34.0
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 2.6e-25 121.3 230 35.2
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 2.6e-25 121.3 324 33.6
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 2.2e-24 118.2 140 48.6
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 4.9e-24 117.1 122 54.1
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 6.5e-24 116.7 151 45.7
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 6.5e-24 116.7 151 45.7
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 6.5e-24 116.7 278 35.3
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 8.4e-24 116.3 142 47.9
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 8.4e-24 116.3 144 48.6
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 8.4e-24 116.3 141 49.6
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.4e-23 115.5 275 37.5
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.4e-23 115.5 252 34.5
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 3.2e-23 114.4 146 46.6
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 1.6e-22 112.1 244 35.2
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.0e-21 107.8 277 32.1
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 5.7e-20 103.6 257 34.6
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 7.4e-20 103.2 258 33.7
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 9.6e-20 102.8 214 36.9
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.3e-19 102.4 142 40.8
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 2.1e-19 101.7 132 40.9
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 3.7e-19 100.9 250 32.8
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 3.7e-19 100.9 675 22.4
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 4.8e-19 100.5 257 34.6
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 8.2e-19 99.8 220 35.5
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 1.1e-18 99.4 95 53.7
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.1e-18 99.4 119 44.5
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 6.9e-18 96.7 255 32.2
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.0e-16 92.8 229 34.5
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.3e-16 92.4 276 28.6
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 5.0e-16 90.5 157 41.4
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 7.2e-15 86.7 473 23.5
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 9.3e-15 86.3 97 39.2
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 1.2e-14 85.9 82 43.9
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.0e-13 82.8 479 23.4
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 1.9e-12 78.6 103 48.5
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 6.3e-11 73.6 620 21.8
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 6.3e-11 73.6 76 50.0
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 1.1e-10 72.8 147 28.6
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 9.1e-10 69.7 111 33.3
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 4.2e-07 60.8 50 60.0
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 4.2e-07 60.8 214 22.9


User provided reference genes

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