Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002325g0090 Nicotiana tabacum HOM05D008466 ORTHO05D010817 8.6e-199 696.8 359 100.0
Nitab4.5_0000031g0180 Nicotiana tabacum HOM05D008466 ORTHO05D011423 3.0e-127 459.1 414 65.5
Nitab4.5_0008578g0050 Nicotiana tabacum HOM05D008466 ORTHO05D011423 9.5e-105 384.4 345 65.2
Nitab4.5_0014136g0010 Nicotiana tabacum HOM05D008466 ORTHO05D010817 4.9e-69 265.8 313 55.0
ATMG00285 Arabidopsis thaliana HOM05D008466 ORTHO05D010817 1.5e-65 254.2 239 63.2
Nitab4.5_0010033g0120 Nicotiana tabacum HOM05D008466 ORTHO05D010817 1.3e-64 251.1 233 64.4
A04p09550 Brassica napus HOM05D008466 ORTHO05D010817 2.9e-61 240.0 145 86.9
LjContig00315g0013151 Lotus japonicus HOM05D008466 ORTHO05D010817 5.4e-60 235.7 145 86.2
CDE02G0407 Ceratophyllum demersum HOM05D008466 ORTHO05D010817 1.7e-58 230.7 149 83.2
Nitab4.5_0001796g0330 Nicotiana tabacum HOM05D008466 ORTHO05D010817 2.9e-53 213.4 121 89.3
BolSC28t60321H Brassica oleracea HOM05D008466 ORTHO05D010817 8.4e-53 211.8 134 85.1
BraSC48t46287Z Brassica rapa HOM05D008466 ORTHO05D010817 8.4e-53 211.8 134 85.1
BraSC48t46336Z Brassica rapa HOM05D008466 ORTHO05D010817 8.4e-53 211.8 134 85.1
Potri.007G062442 Populus trichocarpa HOM05D008466 ORTHO05D010817 1.4e-52 211.1 134 85.1
SEGI_14764 Sequoiadendron giganteum HOM05D008466 ORTHO05D010817 1.2e-51 208.0 232 55.2
Lalb_Chr00c21g0406001 Lupinus albus HOM05D008466 ORTHO05D010817 1.6e-51 207.6 134 84.3
Nitab4.5_0000172g1700 Nicotiana tabacum HOM05D008466 ORTHO05D010817 1.3e-48 198.0 245 52.2
Nitab4.5_0001952g0270 Nicotiana tabacum HOM05D007797 ORTHO05D009741 5.3e-47 192.6 115 86.1
Glyma.01G136900 Glycine max HOM05D008466 ORTHO05D010817 2.6e-46 190.3 130 77.7
BolSC28t60423H Brassica oleracea HOM05D008466 ORTHO05D010817 2.7e-43 180.3 116 82.8
Peaxi162Scf00651g00634 Petunia axillaris HOM05D008466 ORTHO05D010817 8.7e-42 175.3 386 38.1
Nitab4.5_0000172g1860 Nicotiana tabacum HOM05D007797 ORTHO05D009741 7.1e-36 155.6 99 82.8
Nitab4.5_0000925g0080 Nicotiana tabacum HOM05D008923 ORTHO05D011423 7.1e-36 155.6 156 60.3
CAN.G1045.3 Capsicum annuum HOM05D007797 ORTHO05D009741 3.3e-33 146.7 86 89.5
Nitab4.5_0001796g0310 Nicotiana tabacum HOM05D008923 ORTHO05D011423 5.7e-33 146.0 205 49.3
PGSC0003DMG402008334 Solanum tuberosum HOM05D007797 ORTHO05D009741 1.3e-32 144.8 86 88.4
TPR.G7441 Trifolium pratense HOM05D008466 ORTHO05D010817 2.8e-32 143.7 92 83.7
Hma1.2p1_0038F.1_g024100 Hydrangea macrophylla HOM05D007797 ORTHO05D009741 2.4e-31 140.6 86 84.9
Cc00_g01610 Coffea canephora HOM05D007797 ORTHO05D009741 3.1e-31 140.2 86 87.2
Peaxi162Scf00216g00118 Petunia axillaris HOM05D007797 ORTHO05D009741 3.1e-31 140.2 86 86.0
CAN.G547.14 Capsicum annuum HOM05D007797 ORTHO05D009741 5.3e-31 139.4 86 86.0
CANSAT16G0024 Cannabis sativa HOM05D007797 ORTHO05D009741 2.0e-30 137.5 100 76.0
CsaV3_UNG208730 Cucumis sativus L. HOM05D007797 ORTHO05D009741 2.0e-30 137.5 86 83.7
Nitab4.5_0000580g0160 Nicotiana tabacum HOM05D008466 ORTHO05D010817 2.6e-30 137.1 88 81.8
SHI26648 Sapria himalayana HOM05D007797 ORTHO05D009741 1.7e-29 134.4 82 84.1
Nn1g09938 Nelumbo nucifera HOM05D007797 ORTHO05D009741 2.2e-29 134.0 86 83.7
Nn1g09983 Nelumbo nucifera HOM05D007797 ORTHO05D009741 2.2e-29 134.0 86 83.7
Nn1g10175 Nelumbo nucifera HOM05D007797 ORTHO05D009741 2.2e-29 134.0 86 83.7
CAN.G14.28 Capsicum annuum HOM05D007797 ORTHO05D009741 1.9e-28 131.0 86 83.7
CiPaw.11G081100 Carya illinoinensis HOM05D008466 ORTHO05D010817 4.2e-28 129.8 80 85.0
Gorai.001G167700 Gossypium raimondii HOM05D008466 ORTHO05D010817 9.4e-28 128.6 229 40.6
Gorai.001G167600 Gossypium raimondii HOM05D007797 ORTHO05D009741 3.6e-27 126.7 80 83.8
SalBow1G0863 Salvia bowleyana HOM05D008466 ORTHO05D010817 3.6e-27 126.7 80 83.8
Nitab4.5_0001952g0260 Nicotiana tabacum HOM05D008466 ORTHO05D010817 1.0e-26 125.2 220 41.8
Zm00001eb187490 Zea mays HOM05D008466 ORTHO05D010817 1.0e-26 125.2 80 82.5
Zm00001eb436220 Zea mays HOM05D008466 ORTHO05D010817 1.0e-26 125.2 80 82.5
Zm00001eb436270 Zea mays HOM05D008466 ORTHO05D010817 1.0e-26 125.2 80 82.5
Zm00001eb436350 Zea mays HOM05D008466 ORTHO05D010817 1.0e-26 125.2 80 82.5
Zm00001eb436460 Zea mays HOM05D008466 ORTHO05D010817 1.0e-26 125.2 80 82.5
Zm00001eb436500 Zea mays HOM05D008466 ORTHO05D010817 1.0e-26 125.2 80 82.5
Lalb_Chr00c39g0409011 Lupinus albus HOM05D008466 ORTHO05D010817 3.0e-26 123.6 80 81.2
Lalb_Chr00c39g0409191 Lupinus albus HOM05D008466 ORTHO05D010817 3.0e-26 123.6 80 81.2
Lalb_Chr18g0049571 Lupinus albus HOM05D008466 ORTHO05D010817 3.0e-26 123.6 80 81.2
VMungo0565G0006 Vigna mungo HOM05D008466 ORTHO05D010817 3.0e-26 123.6 80 81.2
Gohir.D08G087700 Gossypium hirsutum HOM05D007797 ORTHO05D009741 3.3e-25 120.2 80 80.0
Medtr2g040780 Medicago truncatula HOM05D008466 ORTHO05D010817 1.1e-23 115.2 73 82.2
arahy.Tifrunner.gnm1.ann1.48KRUQ Arachis hypogaea HOM05D008466 ORTHO05D010817 9.1e-23 112.1 73 80.8
Rhsim08G0173100 Rhododendron simsii HOM05D002913 ORTHO05D003323 1.2e-22 111.7 86 66.3
Potri.001G285100 Populus trichocarpa HOM05D007797 ORTHO05D009741 1.3e-21 108.2 87 70.1
PGR102G1585 Punica granatum HOM05D007797 ORTHO05D009741 2.9e-21 107.1 85 60.0
Hma1.2p1_0038F.1_g024110 Hydrangea macrophylla HOM05D007797 ORTHO05D009741 2.5e-20 104.0 66 81.8
FvH4_c1g00520 Fragaria vesca HOM05D008923 ORTHO05D011423 3.2e-20 103.6 98 64.3
Gohir.D10G141100 Gossypium hirsutum HOM05D007797 ORTHO05D009741 3.2e-20 103.6 82 65.9
Gorai.011G157000 Gossypium raimondii HOM05D007797 ORTHO05D009741 3.2e-20 103.6 82 65.9
Gohir.A10G125300 Gossypium hirsutum HOM05D007797 ORTHO05D009741 4.2e-20 103.2 82 64.6
PGR044G2108 Punica granatum HOM05D007797 ORTHO05D009741 7.2e-20 102.4 86 58.1
Lalb_Chr01g0005641 Lupinus albus HOM05D007797 ORTHO05D009741 2.1e-19 100.9 82 61.0
MD11G1291100 Malus domestica HOM05D007797 ORTHO05D009741 2.1e-19 100.9 86 60.5
Mapoly0157s0028 Marchantia polymorpha HOM05D008466 ORTHO05D010817 3.6e-19 100.1 80 70.0
Hund02811 Selenicereus undatus HOM05D007797 ORTHO05D009741 3.6e-19 100.1 85 58.8
TPR.G4600 Trifolium pratense HOM05D007797 ORTHO05D009741 7.9e-19 99.0 81 58.0
Ca_26932_v3 Cicer arietinum L. HOM05D007797 ORTHO05D009741 1.0e-18 98.6 81 59.3
Lalb_Chr19g0135861 Lupinus albus HOM05D007797 ORTHO05D009741 1.0e-18 98.6 82 58.5
Gohir.A05G087550 Gossypium hirsutum HOM05D007797 ORTHO05D009741 1.4e-18 98.2 82 64.6
Gohir.D05G088550 Gossypium hirsutum HOM05D007797 ORTHO05D009741 1.8e-18 97.8 82 63.4
Glyma.12G099000 Glycine max HOM05D007797 ORTHO05D009741 2.3e-18 97.4 81 59.3
Glyma.06G305600 Glycine max HOM05D007797 ORTHO05D009741 3.0e-18 97.1 81 59.3
Medtr4g048070 Medicago truncatula HOM05D007797 ORTHO05D009741 3.0e-18 97.1 81 59.3
Sabra15G0102600 Salix brachista HOM05D007797 ORTHO05D009741 3.9e-18 96.7 86 66.3
Cc02_g04270 Coffea canephora HOM05D007797 ORTHO05D009741 5.1e-18 96.3 85 60.0
Psat7g157320 Pisum sativum HOM05D007797 ORTHO05D009741 5.1e-18 96.3 81 56.8
VMungo1127G0257 Vigna mungo HOM05D007797 ORTHO05D009741 1.1e-17 95.1 81 56.8
Potri.015G078000 Populus trichocarpa HOM05D007797 ORTHO05D009741 2.0e-17 94.4 86 62.8
Medtr8g059750 Medicago truncatula HOM05D008466 ORTHO05D010817 3.3e-17 93.6 84 65.5
Phvul.008G036400 Phaseolus vulgaris HOM05D007797 ORTHO05D009741 3.3e-17 93.6 81 56.8
Ah.01g002110 Amaranthus hybridus HOM05D007797 ORTHO05D009741 5.7e-17 92.8 85 54.1
SGA_v2.0_scaffold104G30278 Striga asiatica HOM05D007797 ORTHO05D009741 7.4e-17 92.4 85 57.6
SGA_v2.0_scaffold36G14284 Striga asiatica HOM05D007797 ORTHO05D009741 9.7e-17 92.0 85 57.6
FAN27G1170 Fragaria x ananassa HOM05D007797 ORTHO05D009741 4.8e-16 89.7 85 51.8
Phvul.011G103900 Phaseolus vulgaris HOM05D007797 ORTHO05D009741 4.8e-16 89.7 81 54.3
FvH4_2g13880 Fragaria vesca HOM05D007797 ORTHO05D009741 6.3e-16 89.4 85 51.8
Ah.01g013130 Amaranthus hybridus HOM05D007797 ORTHO05D009741 8.2e-16 89.0 83 54.2
FAN15G0457 Fragaria x ananassa HOM05D007797 ORTHO05D009741 1.1e-15 88.6 85 51.8
RcHm_v2.0_Chr6g0275631 Rosa chinensis HOM05D007797 ORTHO05D009741 2.4e-15 87.4 85 49.4
arahy.Tifrunner.gnm1.ann1.BQ3MLV Arachis hypogaea HOM05D007797 ORTHO05D009741 3.1e-15 87.0 82 52.4
arahy.Tifrunner.gnm1.ann1.WH4ZAG Arachis hypogaea HOM05D007797 ORTHO05D009741 3.1e-15 87.0 82 52.4
vmacro08745 Vaccinium macrocarpon HOM05D002681 ORTHO05D009741 3.1e-15 87.0 113 49.6
AUR62012872 Chenopodium quinoa HOM05D007797 ORTHO05D009741 9.1e-15 85.5 140 40.0
AUR62017640 Chenopodium quinoa HOM05D007797 ORTHO05D009741 9.1e-15 85.5 140 40.0
RcHm_v2.0_MTg0498181 Rosa chinensis HOM05D008466 ORTHO05D010817 9.1e-15 85.5 54 85.2
TWI39G0893 Tripterygium wilfordii HOM05D007797 ORTHO05D009741 1.2e-14 85.1 86 58.1
Sopen00g002560 Solanum pennellii HOM05D008923 ORTHO05D011423 1.5e-14 84.7 68 69.1
RhsimMtG0002900 Rhododendron simsii HOM05D008923 ORTHO05D011423 2.0e-14 84.3 65 69.2
COL.COLO4_35798 Corchorus olitorius HOM05D007797 ORTHO05D009741 2.6e-14 84.0 82 53.7
FAN20G1591 Fragaria x ananassa HOM05D008923 ORTHO05D011423 4.5e-14 83.2 44 93.2
Hma1.2p1_0335F.1_g128880 Hydrangea macrophylla HOM05D008923 ORTHO05D011423 4.5e-14 83.2 44 93.2
SalBow1G1510 Salvia bowleyana HOM05D008923 ORTHO05D011423 4.5e-14 83.2 44 93.2
GSVIVG01004963001 Vitis vinifera HOM05D008923 ORTHO05D011423 7.7e-14 82.4 48 87.5
arahy.Tifrunner.gnm1.ann1.GWEJ34 Arachis hypogaea HOM05D008466 ORTHO05D010817 1.0e-13 82.0 54 81.5
Gohir.D08G087750 Gossypium hirsutum HOM05D008923 ORTHO05D011423 1.3e-13 81.6 59 72.9
Gorai.005G103300 Gossypium raimondii HOM05D008923 ORTHO05D011423 1.3e-13 81.6 44 90.9
BraSC48t46301Z Brassica rapa HOM05D008466 ORTHO05D010817 1.7e-13 81.3 52 76.9
CANSAT54G1603 Cannabis sativa HOM05D007797 ORTHO05D009741 1.7e-13 81.3 85 55.3
HanXRQMTg0579461 Helianthus annuus HOM05D008923 ORTHO05D011423 2.2e-13 80.9 44 88.6
MBI08_g16748_MAGBIO Magnolia biondii HOM05D008923 ORTHO05D011423 2.2e-13 80.9 96 57.3
PSO384G3399 Papaver somniferum HOM05D007797 ORTHO05D009741 3.8e-13 80.1 85 49.4
Psat0s2778g0120 Pisum sativum HOM05D008923 ORTHO05D011423 3.8e-13 80.1 44 90.9
Gohir.D02G091950 Gossypium hirsutum HOM05D008923 ORTHO05D011423 6.5e-13 79.3 59 69.5
PSO135G0291 Papaver somniferum HOM05D007797 ORTHO05D009741 8.5e-13 79.0 85 48.2
VMungo0565G0002 Vigna mungo HOM05D008923 ORTHO05D011423 8.5e-13 79.0 41 95.1
EL10Ac9g22883 Beta vulgaris HOM05D007797 ORTHO05D009741 1.5e-12 78.2 103 45.6
Ca_04597_v3 Cicer arietinum L. HOM05D008923 ORTHO05D013768 1.9e-12 77.8 72 65.3
Carub.0006s2655 Capsella rubella HOM05D008466 ORTHO05D010817 3.2e-12 77.0 92 52.2
Haze_26858 Corylus avellana HOM05D000729 ORTHO05D001063 5.5e-12 76.3 101 45.5
SHI54298 Sapria himalayana HOM05D008923 ORTHO05D011423 9.4e-12 75.5 45 84.4
BcaB05g21543 Brassica carinata HOM05D007797 ORTHO05D009741 6.1e-11 72.8 78 47.4
Carub.0006s0813 Capsella rubella HOM05D007797 ORTHO05D009741 6.1e-11 72.8 78 47.4
SalBow7G2468 Salvia bowleyana HOM05D000878 ORTHO05D001408 6.1e-11 72.8 82 50.0
THA.LOC104799736 Tarenaya hassleriana HOM05D007797 ORTHO05D009741 6.1e-11 72.8 82 42.7
Aa31LG3G17450 Aethionema arabicum HOM05D007797 ORTHO05D009741 8.0e-11 72.4 78 46.2
Thhalv10016099m.g Eutrema salsugineum HOM05D007797 ORTHO05D009741 8.0e-11 72.4 78 47.4
Sp6g33770 Schrenkiella parvula HOM05D007797 ORTHO05D009741 8.0e-11 72.4 78 47.4
ATR0480G001 Amborella trichopoda HOM05D008923 ORTHO05D011423 1.0e-10 72.0 41 90.2
Aqoxy4G02474 Aquilegia oxysepala HOM05D007797 ORTHO05D009741 1.0e-10 72.0 81 46.9
Carub.0003s2765 Capsella rubella HOM05D007797 ORTHO05D009741 1.8e-10 71.2 78 46.2
CARHR203780 Cardamine hirsuta HOM05D007797 ORTHO05D009741 1.8e-10 71.2 78 46.2
AL6G20010 Arabidopsis lyrata HOM05D007797 ORTHO05D009741 6.7e-10 69.3 78 44.9
AT4G32210 Arabidopsis thaliana HOM05D007797 ORTHO05D009741 6.7e-10 69.3 78 44.9
AT5G09600 Arabidopsis thaliana HOM05D007797 ORTHO05D009741 6.7e-10 69.3 78 44.9
SHI26553 Sapria himalayana HOM05D008923 ORTHO05D011423 8.8e-10 68.9 45 80.0
Nitab4.5_0000580g0170 Nicotiana tabacum HOM05D007797 ORTHO05D009741 1.5e-09 68.2 52 76.9
BolC9t59546H Brassica oleracea HOM05D007797 ORTHO05D009741 2.8e-08 63.9 78 44.9
A10p27750 Brassica napus HOM05D007797 ORTHO05D009741 3.7e-08 63.5 78 43.6
C09p67860 Brassica napus HOM05D007797 ORTHO05D009741 3.7e-08 63.5 78 43.6
BraA10t44826Z Brassica rapa HOM05D007797 ORTHO05D009741 3.7e-08 63.5 78 43.6
CAN.G7.25 Capsicum annuum HOM05D008466 ORTHO05D009741 7.0e-07 59.3 41 78.0
Nitab4.5_0000172g2090 Nicotiana tabacum HOM05D008466 ORTHO05D011423 7.0e-07 59.3 28 89.3
Medtr3g035660 Medicago truncatula HOM05D000729 ORTHO05D001063 2.6e-06 57.4 103 34.0
arahy.Tifrunner.gnm1.ann1.6Q4XIG Arachis hypogaea HOM05D000729 ORTHO05D001063 3.5e-06 57.0 103 33.0
arahy.Tifrunner.gnm1.ann1.KE24QQ Arachis hypogaea HOM05D000729 ORTHO05D001063 4.5e-06 56.6 103 33.0
LjContig00319g0001918 Lotus japonicus HOM05D000729 ORTHO05D001063 7.7e-06 55.8 103 34.0


User provided reference genes

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