Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 0.0e+00 1332.8 692 100.0
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 0.0e+00 1158.3 661 91.4
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 0.0e+00 1144.0 664 89.0
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 0.0e+00 1142.1 664 88.7
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 0.0e+00 1117.4 663 87.5
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 5.6e-287 990.7 871 64.9
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 9.5e-279 963.4 671 75.0
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 9.5e-279 963.4 649 76.1
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 3.7e-275 951.4 669 73.8
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 8.3e-275 950.3 649 75.5
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 2.7e-273 945.3 654 75.1
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 2.8e-270 935.3 659 72.8
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 8.9e-269 930.2 664 72.4
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 7.6e-268 927.2 652 72.5
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 7.6e-268 927.2 651 72.8
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 3.2e-266 921.8 662 72.1
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 3.2e-266 921.8 648 72.5
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 1.3e-264 916.4 645 73.0
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 5.1e-264 914.4 670 71.9
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 6.6e-264 914.1 655 72.1
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 1.9e-263 912.5 645 73.6
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 8.9e-261 903.7 653 72.0
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 8.9e-261 903.7 647 72.0
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 1.2e-260 903.3 653 70.3
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 1.5e-260 902.9 652 71.2
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 4.4e-260 901.4 649 72.7
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 1.7e-259 899.4 649 72.4
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 3.8e-259 898.3 658 71.3
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 8.4e-259 897.1 652 71.0
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 9.3e-258 893.6 656 69.2
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 1.6e-257 892.9 649 71.3
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 2.1e-257 892.5 657 70.8
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 1.0e-256 890.2 645 70.1
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 1.3e-256 889.8 657 69.4
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 1.3e-256 889.8 657 68.9
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 1.7e-256 889.4 659 68.9
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 3.9e-256 888.3 649 70.9
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 1.5e-255 886.3 649 71.0
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 1.9e-255 885.9 652 69.5
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 3.3e-255 885.2 664 69.6
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 7.3e-255 884.0 650 70.9
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 2.1e-254 882.5 657 68.9
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 3.6e-254 881.7 655 70.7
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 3.6e-254 881.7 648 70.7
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 1.8e-253 879.4 659 68.3
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 9.0e-253 877.1 645 70.7
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 9.9e-252 873.6 649 69.8
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 1.7e-251 872.8 645 70.4
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 8.4e-251 870.5 649 69.6
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 1.1e-250 870.2 643 69.7
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 1.6e-249 866.3 648 70.8
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 1.6e-249 866.3 649 68.9
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 1.6e-249 866.3 643 69.1
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 7.9e-249 864.0 644 69.3
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 1.0e-248 863.6 681 66.8
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 2.3e-248 862.4 645 69.1
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 3.0e-248 862.1 659 67.5
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 3.0e-248 862.1 652 68.4
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 6.6e-248 860.9 643 69.1
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 4.3e-247 858.2 649 69.3
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 2.1e-246 855.9 653 68.8
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 9.0e-245 850.5 652 67.5
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 1.5e-244 849.7 649 67.8
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 2.6e-244 849.0 682 67.0
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 4.5e-244 848.2 652 67.9
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 7.6e-244 847.4 682 66.9
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 6.0e-241 837.8 651 67.9
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 6.7e-240 834.3 652 69.3
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 1.1e-239 833.6 648 66.4
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 1.1e-237 827.0 660 65.9
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 1.1e-237 827.0 653 66.3
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 2.0e-236 822.8 663 65.5
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 6.0e-233 811.2 644 66.0
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 7.9e-233 810.8 649 65.5
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 1.0e-232 810.4 591 71.4
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 2.5e-231 805.8 644 65.4
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 5.7e-231 804.7 594 70.5
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 2.1e-230 802.7 676 64.2
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 4.1e-229 798.5 603 69.5
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 9.3e-226 787.3 652 64.6
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 1.6e-222 776.5 662 61.3
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 1.6e-222 776.5 597 68.3
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 6.3e-222 774.6 721 59.8
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 3.1e-221 772.3 597 67.3
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 5.9e-220 768.1 610 67.2
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 2.4e-213 746.1 664 60.5
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 1.6e-209 733.4 682 59.4
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 2.6e-204 716.1 645 60.2
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 2.1e-201 706.4 648 59.3
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 2.3e-192 676.4 499 71.1
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 2.8e-190 669.5 651 56.1
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 3.4e-183 646.0 562 60.7
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 4.5e-180 635.6 506 64.8
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 3.8e-179 632.5 841 46.7
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 6.8e-176 621.7 476 68.1
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 1.5e-167 594.0 555 57.1
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 5.6e-162 575.5 604 54.0
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 8.3e-158 561.6 483 61.9
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 8.4e-142 508.4 439 61.0
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 2.8e-129 466.8 441 57.6
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 3.8e-118 429.9 463 51.8
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 5.7e-106 389.4 348 59.2
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 2.0e-82 311.2 412 45.4
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 4.8e-81 306.6 447 43.6
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 4.2e-77 293.5 232 62.1
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.8e-72 278.1 197 75.1
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 5.4e-72 276.6 193 75.1
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.5e-66 258.5 169 75.1
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 4.4e-66 256.9 381 42.8
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 2.6e-58 231.1 291 48.5
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 2.2e-57 228.0 249 55.4
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 3.7e-57 227.3 158 70.3
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 2.3e-46 191.4 137 70.1
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-40 171.8 427 30.2
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 8.6e-38 162.9 97 81.4
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 2.5e-37 161.4 167 55.1
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 1.1e-35 156.0 142 58.5
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 6.8e-35 153.3 95 78.9
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 3.8e-33 147.5 147 55.1
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 1.2e-31 142.5 85 80.0
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 2.3e-30 138.3 90 73.3
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 6.6e-30 136.7 94 69.1
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 8.7e-30 136.3 85 76.5
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.5e-29 135.6 93 72.0
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 1.4e-27 129.0 79 81.0
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 1.5e-26 125.6 161 44.1
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 2.2e-25 121.7 179 43.0
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 6.4e-25 120.2 83 73.5
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 1.3e-22 112.5 424 29.5
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 1.4e-19 102.4 96 60.4
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 2.4e-19 101.7 90 62.2
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 4.0e-19 100.9 196 33.7
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 4.0e-19 100.9 158 42.4
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 4.9e-17 94.0 67 71.6
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 9.3e-16 89.7 65 67.7
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 6.0e-15 87.0 70 64.3
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 3.9e-14 84.3 50 78.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 3.9e-14 84.3 50 78.0
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 7.4e-13 80.1 58 67.2
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 2.8e-12 78.2 50 72.0
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 6.9e-11 73.6 61 60.7
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.1e-08 66.2 62 48.4
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 1.0e-06 59.7 89 44.9


User provided reference genes

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