Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.1e-105 386.7 201 100.0
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.1e-97 358.6 201 93.0
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 3.8e-79 298.5 194 79.4
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 1.1e-78 297.0 199 77.4
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.5e-67 260.0 201 66.7
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 4.5e-64 248.4 200 63.5
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 5.9e-64 248.1 165 78.8
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 2.9e-63 245.7 194 64.4
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.5e-62 242.7 200 62.0
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 7.2e-62 241.1 200 61.5
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 4.0e-60 235.3 201 62.2
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 1.2e-56 223.8 198 57.1
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.5e-56 221.9 194 57.2
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 4.5e-56 221.9 191 57.1
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 5.9e-56 221.5 194 55.2
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 7.8e-56 221.1 191 57.6
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.3e-55 220.3 194 57.2
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 2.9e-55 219.2 191 57.1
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 3.8e-55 218.8 195 56.4
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 3.8e-55 218.8 191 57.1
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 3.8e-55 218.8 198 57.6
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 6.6e-55 218.0 191 56.5
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 6.6e-55 218.0 192 58.3
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 8.6e-55 217.6 192 55.7
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.1e-54 217.2 191 56.0
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.9e-54 216.5 189 58.7
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 7.3e-54 214.5 191 55.5
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 9.5e-54 214.2 197 54.8
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 9.5e-54 214.2 192 56.8
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 1.2e-53 213.8 195 53.8
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.2e-53 213.8 192 56.8
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.6e-53 213.4 194 56.2
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 2.1e-53 213.0 192 55.2
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.8e-53 212.6 183 56.8
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 2.8e-53 212.6 197 53.8
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 2.8e-53 212.6 191 55.5
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 3.6e-53 212.2 189 56.6
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 6.1e-53 211.5 191 53.9
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 6.1e-53 211.5 192 56.8
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 8.0e-53 211.1 197 54.8
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 1.0e-52 210.7 189 57.1
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.0e-52 210.7 192 53.6
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.4e-52 210.3 183 55.7
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 2.3e-52 209.5 197 54.8
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.1e-52 209.1 194 54.6
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 3.1e-52 209.1 192 55.7
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 4.0e-52 208.8 192 55.2
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.0e-52 208.8 183 55.7
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 5.2e-52 208.4 189 52.9
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 5.2e-52 208.4 191 53.9
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 8.9e-52 207.6 187 55.1
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 8.9e-52 207.6 193 52.3
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.5e-51 206.8 191 52.9
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 2.6e-51 206.1 197 52.3
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 2.6e-51 206.1 187 57.8
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 2.6e-51 206.1 197 53.3
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 3.4e-51 205.7 187 54.5
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 4.4e-51 205.3 192 54.2
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 4.4e-51 205.3 197 53.3
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 5.8e-51 204.9 191 53.4
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 5.8e-51 204.9 191 53.4
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 7.5e-51 204.5 198 53.5
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 9.8e-51 204.1 197 49.7
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 9.8e-51 204.1 197 53.8
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 9.8e-51 204.1 192 53.6
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 9.8e-51 204.1 191 52.4
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 9.8e-51 204.1 187 53.5
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 1.3e-50 203.8 197 51.8
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.3e-50 203.8 197 50.3
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.7e-50 203.4 197 54.3
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 2.9e-50 202.6 191 52.9
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 6.4e-50 201.4 197 52.3
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 1.1e-49 200.7 197 51.3
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 1.1e-49 200.7 191 51.8
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.4e-49 200.3 191 51.8
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 2.4e-49 199.5 195 53.8
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 4.1e-49 198.7 197 51.3
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 4.1e-49 198.7 199 51.3
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 4.1e-49 198.7 197 53.3
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 5.4e-49 198.4 197 52.3
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 5.4e-49 198.4 193 52.8
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 9.2e-49 197.6 189 50.8
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 1.2e-48 197.2 193 51.3
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 1.2e-48 197.2 191 54.5
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 2.0e-48 196.4 191 53.4
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.7e-48 196.1 192 52.1
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 3.5e-48 195.7 239 46.0
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 7.8e-48 194.5 190 53.2
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 7.8e-48 194.5 174 56.3
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.3e-47 193.7 195 49.7
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 1.3e-47 193.7 191 52.9
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 1.3e-47 193.7 187 54.0
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 1.7e-47 193.4 193 49.7
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 3.0e-47 192.6 191 51.8
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 6.6e-47 191.4 191 50.8
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 8.6e-47 191.0 191 52.4
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 1.1e-46 190.7 191 51.8
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 1.1e-46 190.7 186 51.6
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 1.9e-46 189.9 192 49.0
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 4.3e-46 188.7 194 50.5
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 7.3e-46 188.0 192 48.4
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 7.3e-46 188.0 191 52.9
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 7.3e-46 188.0 192 52.6
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 1.6e-45 186.8 146 62.3
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.8e-45 186.0 186 50.5
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.6e-45 185.7 192 47.4
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 6.2e-45 184.9 192 47.4
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 8.0e-45 184.5 189 49.7
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 8.0e-45 184.5 191 51.8
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 8.0e-45 184.5 192 50.0
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 8.0e-45 184.5 185 47.0
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 3.1e-44 182.6 189 47.6
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 4.0e-44 182.2 196 49.0
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 6.8e-44 181.4 173 53.2
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 6.8e-44 181.4 189 47.1
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 1.5e-43 180.3 194 48.5
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 5.8e-43 178.3 189 47.6
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 9.8e-43 177.6 189 49.7
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.3e-42 177.2 192 47.9
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 2.2e-42 176.4 184 46.7
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 2.9e-42 176.0 196 45.9
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 3.7e-42 175.6 196 45.9
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 3.7e-42 175.6 177 54.2
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 3.7e-42 175.6 183 48.6
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 4.9e-42 175.3 194 46.4
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 1.1e-41 174.1 194 44.3
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.9e-41 173.3 164 54.3
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.9e-41 173.3 142 59.9
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 2.4e-41 172.9 190 47.4
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 2.4e-41 172.9 188 48.9
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.4e-41 172.9 189 46.6
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 4.1e-41 172.2 188 45.7
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 7.0e-41 171.4 191 46.6
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 7.0e-41 171.4 171 53.2
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.6e-40 170.2 196 48.0
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 3.5e-40 169.1 191 46.1
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 2.3e-39 166.4 195 46.7
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 8.6e-39 164.5 191 45.0
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 1.1e-38 164.1 188 45.2
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.5e-38 163.7 142 54.2
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.2e-37 160.6 194 42.3
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 8.1e-37 157.9 196 42.9
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.3e-36 156.4 190 45.3
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 2.3e-36 156.4 189 45.0
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 4.0e-36 155.6 162 51.2
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 5.2e-36 155.2 197 44.2
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.2e-36 155.2 190 45.8
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 3.4e-35 152.5 198 44.4
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 3.4e-35 152.5 198 44.4
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 2.2e-34 149.8 193 43.0
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 8.3e-34 147.9 191 41.4
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 5.4e-33 145.2 127 54.3
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 5.4e-33 145.2 127 56.7
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 5.4e-33 145.2 162 47.5
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 4.6e-32 142.1 187 42.8
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 7.8e-32 141.4 165 48.5
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 5.6e-30 135.2 166 50.6
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.2e-29 134.0 137 48.2
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.6e-29 133.7 189 42.3
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.1e-28 131.0 148 47.3
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.8e-28 130.2 130 46.9
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 1.2e-27 127.5 197 39.6
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 8.4e-26 121.3 151 45.0
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 1.4e-25 120.6 113 52.2
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 1.4e-25 120.6 87 72.4
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.3e-23 113.2 139 46.0
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.1e-22 110.9 76 73.7
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 7.6e-19 98.2 194 36.1
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 6.4e-18 95.1 108 49.1
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.3e-14 82.8 105 45.7
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.3e-14 82.8 183 32.2
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 9.0e-12 74.7 224 24.6
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 2.0e-11 73.6 159 31.4
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 4.5e-11 72.4 182 29.1
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 9.9e-11 71.2 189 29.6
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 1.7e-10 70.5 222 24.8
Solyc04g040020.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.9e-09 67.0 49 67.3
Nitab4.5_0002521g0060 Nicotiana tabacum HOM05D015872 ORTHO05D284606 9.3e-09 64.7 40 82.5
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.8e-07 60.5 79 44.3
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 6.7e-07 58.5 73 45.2
FAN17G0163 Fragaria x ananassa HOM05D003838 ORTHO05D004444 5.6e-06 55.5 71 43.7


User provided reference genes

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