Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1845.9 941 100.0
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1747.3 951 95.3
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1485.3 1033 77.4
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1479.5 1036 77.5
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1464.1 1034 77.3
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1461.4 1040 76.4
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1457.6 1034 77.1
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1286.2 1029 67.5
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1285.0 1036 68.0
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1232.6 1019 66.7
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1226.8 1014 66.6
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1226.1 1025 65.6
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1224.5 1024 64.8
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1220.7 1046 64.4
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1218.8 1030 65.4
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1211.8 1019 65.6
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1211.1 1033 65.2
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1211.1 1030 65.1
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1209.5 1028 65.1
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1207.6 1023 64.9
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1205.3 1075 63.2
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1204.5 1027 64.8
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1203.7 1034 64.9
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1203.3 1020 64.2
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1203.3 1032 64.2
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1200.7 1030 65.4
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1200.7 1037 63.5
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1197.2 1030 63.9
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1196.8 1023 64.1
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1194.1 1037 63.3
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1191.8 1042 63.6
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1191.8 1042 63.6
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1187.6 1034 63.0
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1187.6 1047 63.9
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1184.5 1024 63.8
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1184.1 1035 63.3
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1181.8 1031 62.7
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1180.6 1018 64.2
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1179.1 1037 63.3
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1179.1 1034 63.1
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1175.2 1033 63.3
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1174.8 1036 63.4
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1173.7 1038 62.9
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1173.7 1025 63.5
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1173.7 1018 63.7
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1172.5 1010 63.1
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1172.1 1026 63.3
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1168.7 1036 62.9
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1167.5 1034 63.1
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1163.3 1042 63.1
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1162.9 1036 62.5
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1160.6 1045 61.9
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1160.6 1028 62.4
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1156.7 1036 62.5
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1155.6 1024 62.3
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1152.9 1052 61.3
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1151.7 1036 62.1
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1151.7 1004 63.5
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1151.0 1028 62.6
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1149.0 1034 62.1
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1149.0 1030 62.2
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1148.7 1026 62.8
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1147.9 1028 62.6
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1147.1 1018 61.8
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1146.7 1021 62.0
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1145.6 1035 61.7
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1145.2 1044 61.9
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1144.8 980 64.7
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1144.0 1033 61.5
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1142.9 1028 62.5
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1140.9 1030 61.8
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1140.6 1033 61.6
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1139.4 1036 62.0
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1138.3 1037 61.4
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1137.9 1058 60.6
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1137.1 1033 62.2
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1133.2 1076 59.5
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1132.5 1035 61.4
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1130.2 1031 61.8
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1128.6 1026 61.7
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1128.2 1020 61.5
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1127.9 1039 61.7
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1127.5 1026 61.0
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1126.3 994 62.3
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1123.6 1020 61.7
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1120.9 1027 62.2
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1120.5 1033 60.4
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1119.4 994 62.8
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1114.0 1043 61.6
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1110.1 1031 59.9
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1109.7 1038 59.2
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1109.4 1018 61.6
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1109.0 1017 61.5
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1107.4 1045 59.8
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1106.7 1019 61.5
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1106.7 1045 59.6
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1105.5 999 61.6
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1104.7 1013 60.7
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1101.7 991 62.2
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1101.3 1019 61.1
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1100.9 992 62.4
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1096.6 993 62.3
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1094.3 993 62.2
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1082.0 1046 58.3
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 6.4e-312 1074.7 904 66.3
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 6.4e-312 1073.9 933 63.5
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 1.3e-311 1073.2 905 65.5
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 3.7e-310 1068.1 1030 60.2
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 6.4e-310 1067.4 1005 61.0
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 4.1e-309 1064.7 1026 57.6
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 1.6e-308 1062.8 998 60.4
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 2.7e-308 1062.0 1035 59.6
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 1.3e-307 1059.7 1002 59.8
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 5.0e-307 1057.7 1041 57.3
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 1.7e-302 1042.7 1044 58.3
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 6.0e-300 1034.2 929 62.9
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 6.0e-300 1034.2 1002 57.9
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 1.1e-298 1030.0 1021 57.0
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 3.6e-297 1025.0 1031 56.8
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.5e-287 993.0 1014 56.7
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 3.2e-285 985.3 1034 56.1
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 8.7e-283 977.2 1084 53.7
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 5.6e-282 974.5 1022 55.7
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 1.4e-280 969.9 946 58.6
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 9.9e-279 963.8 1035 55.0
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 5.1e-275 951.4 1000 55.5
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 1.1e-266 923.7 863 60.3
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 1.9e-266 922.9 1002 53.8
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 2.5e-266 922.5 986 56.6
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 8.8e-243 844.3 913 54.2
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 1.2e-228 797.3 765 58.7
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 2.8e-225 786.2 1001 48.2
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 9.4e-213 744.6 991 46.1
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.0e-211 741.1 780 57.3
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 3.3e-205 719.5 1024 44.5
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 1.1e-200 704.5 713 58.2
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.8e-196 689.9 998 43.8
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 4.7e-196 689.1 670 59.6
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 3.4e-194 682.9 992 44.7
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 1.3e-193 681.0 738 56.8
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.6e-191 672.5 989 42.9
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 1.7e-182 644.0 815 47.7
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.3e-174 617.8 804 47.8
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.6e-162 577.0 907 42.1
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.3e-156 558.1 689 52.5
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.9e-144 517.7 891 40.1
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.9e-133 481.1 820 42.0
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 6.3e-132 476.1 625 49.1
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 4.2e-120 436.8 391 58.8
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 3.8e-113 413.7 646 42.7
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 8.8e-110 402.5 1140 31.0
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 2.8e-108 397.5 581 46.1
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 2.8e-108 397.5 619 43.3
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.5e-98 363.6 463 49.9
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 5.9e-98 363.2 557 41.7
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.4e-62 245.7 175 75.4
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.2e-61 242.7 175 74.3
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 4.7e-55 220.7 180 68.3
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.3e-47 196.1 213 48.8
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 5.8e-45 187.2 167 60.5
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 1.9e-43 182.2 148 64.9
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.9e-43 182.2 310 42.3
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.2e-43 181.4 232 45.3
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.6e-37 161.8 134 60.4
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 8.4e-36 156.8 626 28.8
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 8.7e-33 146.7 174 51.1
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 6.9e-30 137.1 599 24.9
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.0e-29 135.6 131 57.3
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.3e-23 116.3 121 50.4
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.8e-22 112.5 95 57.9
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 3.1e-22 111.7 115 53.9
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 5.3e-22 110.9 126 52.4
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 9.0e-22 110.2 517 25.7
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 1.1e-14 86.7 63 74.6
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 3.4e-13 81.6 126 43.7
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 3.9e-09 68.2 67 50.7


User provided reference genes

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