Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.6e-269 931.4 441 100.0
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 3.6e-263 911.0 440 98.0
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 6.7e-254 880.2 438 93.4
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 2.0e-253 878.6 438 93.2
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 4.8e-252 874.0 439 93.6
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 1.8e-246 855.5 439 91.3
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 5.2e-246 854.0 439 91.1
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 2.2e-212 742.3 440 76.1
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 4.9e-212 741.1 433 77.1
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 1.4e-211 739.6 434 76.5
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 1.4e-211 739.6 433 76.9
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 7.1e-211 737.3 433 76.2
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 7.1e-211 737.3 434 77.4
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 9.2e-211 736.9 434 76.3
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 6.0e-210 734.2 433 76.4
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 1.0e-209 733.4 435 75.2
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 6.6e-209 730.7 434 74.7
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 4.3e-208 728.0 437 75.5
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 7.3e-208 727.2 435 74.9
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.2e-207 726.5 432 76.6
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 3.6e-207 724.9 437 74.1
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 8.1e-207 723.8 435 74.7
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 8.1e-207 723.8 439 74.5
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 2.4e-206 722.2 435 74.5
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 5.2e-206 721.1 435 74.5
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 6.8e-206 720.7 431 74.9
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 1.2e-205 719.9 435 74.7
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 1.5e-205 719.5 450 73.1
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 2.6e-205 718.8 435 74.7
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 5.8e-205 717.6 435 74.5
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 7.6e-205 717.2 431 75.6
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 9.9e-205 716.8 437 74.1
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 6.4e-204 714.1 437 74.4
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 6.4e-204 714.1 437 73.9
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 6.4e-204 714.1 432 75.5
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 1.1e-203 713.4 431 76.1
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 1.9e-203 712.6 431 75.6
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 4.2e-203 711.4 437 73.5
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 7.1e-203 710.7 432 75.7
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 9.2e-203 710.3 437 73.7
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 2.7e-202 708.8 435 72.6
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 2.7e-202 708.8 441 73.5
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 4.6e-202 708.0 430 74.9
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 4.6e-202 708.0 434 74.0
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 1.3e-201 706.4 432 75.0
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 1.7e-201 706.1 438 74.4
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 2.3e-201 705.7 431 75.2
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 3.9e-201 704.9 426 74.9
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 6.6e-201 704.1 432 74.1
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 6.6e-201 704.1 439 72.4
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 1.5e-200 703.0 432 74.8
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 2.5e-200 702.2 430 75.3
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 2.5e-200 702.2 432 74.1
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 3.3e-200 701.8 439 73.8
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 4.3e-200 701.4 473 69.3
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 2.8e-199 698.7 434 74.0
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 6.2e-199 697.6 434 73.3
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 4.0e-198 694.9 431 73.5
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 6.9e-198 694.1 434 72.8
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 6.9e-198 694.1 433 72.5
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 6.9e-198 694.1 432 73.8
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 1.2e-197 693.3 434 73.3
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 2.9e-196 688.7 432 72.7
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 4.9e-196 688.0 422 73.7
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 1.9e-195 686.0 434 72.8
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 1.9e-195 686.0 433 72.3
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 4.2e-195 684.9 437 71.6
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 5.4e-195 684.5 436 71.3
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 7.1e-195 684.1 438 72.8
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 1.2e-194 683.3 437 72.1
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 1.2e-194 683.3 437 71.2
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 2.1e-194 682.6 433 71.6
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 6.0e-194 681.0 437 70.5
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 1.7e-193 679.5 432 71.5
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 1.7e-193 679.5 438 72.4
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 2.3e-193 679.1 434 71.4
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 3.0e-193 678.7 434 71.4
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 3.9e-193 678.3 432 71.5
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.1e-192 676.8 437 70.9
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 2.5e-192 675.6 437 71.6
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 5.6e-192 674.5 434 71.0
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 1.1e-190 670.2 438 70.3
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 2.4e-190 669.1 427 72.1
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 6.9e-190 667.5 428 71.0
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 2.0e-189 666.0 434 70.0
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 9.9e-189 663.7 433 69.5
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.7e-188 662.9 442 69.0
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 2.2e-188 662.5 394 76.4
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 6.4e-188 661.0 432 69.4
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 8.4e-188 660.6 428 69.9
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 8.4e-188 660.6 430 69.8
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 1.4e-187 659.8 433 69.1
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 2.4e-187 659.1 404 73.0
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 2.1e-186 656.0 437 67.7
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 4.6e-186 654.8 432 69.2
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 6.0e-186 654.4 437 68.6
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 7.9e-186 654.1 432 67.8
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 5.1e-185 651.4 432 67.1
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 2.8e-183 645.6 432 67.8
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 2.4e-182 642.5 434 69.1
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 3.1e-182 642.1 432 67.1
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 7.6e-181 637.5 438 66.0
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 1.3e-180 636.7 437 66.1
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 1.7e-180 636.3 394 73.6
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 2.2e-180 636.0 437 66.1
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 8.4e-180 634.0 436 65.8
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 9.3e-179 630.6 437 65.4
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 7.9e-178 627.5 443 65.0
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 1.8e-177 626.3 437 65.2
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 1.1e-176 623.6 430 67.4
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 7.4e-176 620.9 468 61.8
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 1.3e-175 620.2 434 67.7
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 2.8e-175 619.0 434 67.1
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 6.9e-174 614.4 438 65.3
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 3.8e-172 608.6 418 67.9
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 9.7e-168 594.0 476 60.7
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 8.5e-164 580.9 476 60.9
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 1.4e-163 580.1 435 62.5
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 1.0e-161 573.9 437 61.1
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.4e-161 573.5 462 60.8
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 1.5e-160 570.1 388 67.5
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 1.8e-153 546.6 445 59.1
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 8.2e-151 537.7 432 60.0
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 4.5e-149 531.9 352 69.9
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 1.9e-147 526.6 433 57.7
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 2.7e-146 522.7 445 55.5
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 1.4e-145 520.4 428 56.3
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 7.0e-142 508.1 426 55.9
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 1.8e-137 493.4 429 54.5
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 1.0e-132 477.6 324 67.3
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 8.5e-132 474.6 452 52.7
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 6.6e-124 448.4 475 47.6
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 4.2e-123 445.7 271 74.9
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 9.5e-123 444.5 428 51.9
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 9.8e-112 407.9 326 58.9
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 3.2e-110 402.9 231 79.2
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 4.3e-107 392.5 391 51.4
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 3.7e-95 352.8 242 68.2
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.4e-78 297.7 428 38.8
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 3.9e-76 289.7 179 73.7
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 9.6e-75 285.0 173 73.4
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 2.8e-74 283.5 162 77.8
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 1.5e-67 261.2 202 60.4
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 9.6e-59 231.9 155 69.0
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 3.8e-55 219.9 282 43.6
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 3.8e-55 219.9 140 70.0
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 1.5e-48 198.0 104 82.7
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 4.2e-46 189.9 103 81.6
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 2.4e-41 174.1 100 75.0
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 9.1e-41 172.2 193 46.6
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 4.2e-38 163.3 88 84.1
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 1.6e-37 161.4 110 70.0
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 4.2e-22 110.2 66 71.2
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 3.0e-20 104.0 69 66.7
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 4.0e-20 103.6 95 55.8
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 5.2e-20 103.2 84 56.0
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 1.2e-16 92.0 59 69.5
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 8.5e-15 85.9 43 83.7
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 1.5e-14 85.1 45 82.2
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.2e-13 82.0 41 85.4
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 7.5e-11 72.8 49 69.4


User provided reference genes

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