Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 4.1e-105 384.8 201 100.0
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 9.1e-97 357.1 201 93.0
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 2.1e-77 292.7 199 77.4
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.4e-76 290.0 194 77.8
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.0e-67 259.6 201 66.2
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.3e-66 256.9 200 66.5
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 7.0e-65 251.1 200 65.0
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 2.0e-64 249.6 194 66.0
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 2.0e-64 249.6 200 64.5
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 2.5e-62 242.7 165 77.0
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 5.2e-60 235.0 201 61.7
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 3.7e-58 228.8 191 60.2
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 3.1e-57 225.7 198 58.1
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 9.2e-57 224.2 191 58.6
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.2e-56 223.8 189 60.8
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 3.5e-56 222.2 192 59.9
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 4.5e-56 221.9 194 56.2
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 5.9e-56 221.5 194 58.8
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 5.9e-56 221.5 191 58.6
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 7.8e-56 221.1 191 57.6
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.7e-55 219.9 194 58.8
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 1.7e-55 219.9 191 57.6
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 2.3e-55 219.5 198 59.1
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 2.9e-55 219.2 192 58.3
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 5.0e-55 218.4 191 57.1
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.9e-54 216.5 185 57.8
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 2.5e-54 216.1 191 57.1
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 4.3e-54 215.3 191 56.5
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 4.3e-54 215.3 191 57.1
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 5.6e-54 214.9 187 57.8
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 5.6e-54 214.9 197 55.8
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 5.6e-54 214.9 191 55.5
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 9.5e-54 214.2 194 57.7
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 9.5e-54 214.2 197 55.3
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 1.2e-53 213.8 195 54.4
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.2e-53 213.8 185 56.2
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.8e-53 212.6 185 56.8
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 2.8e-53 212.6 192 57.3
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 3.6e-53 212.2 192 55.7
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 4.7e-53 211.8 197 55.8
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 4.7e-53 211.8 191 56.5
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.1e-53 211.5 195 55.4
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 8.0e-53 211.1 191 56.0
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 8.0e-53 211.1 191 56.5
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.0e-52 210.7 187 55.6
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 1.8e-52 209.9 193 54.4
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 1.8e-52 209.9 191 54.5
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 2.3e-52 209.5 197 54.3
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.3e-52 209.5 194 55.7
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.3e-52 209.5 192 57.3
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 3.1e-52 209.1 192 56.2
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 3.1e-52 209.1 191 55.0
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 4.0e-52 208.8 197 54.3
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 4.0e-52 208.8 192 57.3
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 5.2e-52 208.4 197 54.8
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 6.8e-52 208.0 198 56.1
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 8.9e-52 207.6 197 54.8
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 1.2e-51 207.2 197 51.8
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.2e-51 207.2 197 54.8
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 1.2e-51 207.2 197 55.8
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.2e-51 207.2 192 53.6
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 1.5e-51 206.8 192 54.2
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.0e-51 206.5 197 55.8
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 2.6e-51 206.1 188 54.8
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.4e-51 205.7 197 52.3
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 3.4e-51 205.7 195 57.4
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 3.4e-51 205.7 192 55.2
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 7.5e-51 204.5 191 53.4
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 7.5e-51 204.5 192 55.2
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 1.7e-50 203.4 191 53.9
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 2.2e-50 203.0 239 47.7
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 2.9e-50 202.6 191 53.4
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 3.7e-50 202.2 192 54.2
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 8.3e-50 201.1 193 53.9
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 8.3e-50 201.1 189 52.9
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 1.1e-49 200.7 197 53.3
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 2.4e-49 199.5 197 52.3
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 2.4e-49 199.5 188 53.7
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 2.4e-49 199.5 191 55.0
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 3.2e-49 199.1 199 52.3
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 3.2e-49 199.1 193 54.4
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 3.2e-49 199.1 191 52.9
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 4.1e-49 198.7 197 54.8
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 5.4e-49 198.4 191 52.4
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 7.0e-49 198.0 197 53.8
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 9.2e-49 197.6 197 52.3
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 2.0e-48 196.4 191 54.5
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 2.0e-48 196.4 192 51.0
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 3.5e-48 195.7 193 50.3
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.3e-47 193.7 192 50.0
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 1.3e-47 193.7 191 54.5
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 1.3e-47 193.7 191 53.9
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.3e-47 193.0 195 49.7
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 3.9e-47 192.2 191 52.9
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 3.9e-47 192.2 190 54.2
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 8.6e-47 191.0 191 53.4
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.5e-46 190.3 187 51.3
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 1.5e-46 190.3 191 52.9
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 1.9e-46 189.9 192 52.1
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.5e-46 189.5 192 51.6
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.3e-46 189.1 192 50.0
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 4.3e-46 188.7 191 53.9
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 5.6e-46 188.3 186 52.2
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 7.3e-46 188.0 192 47.9
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 7.3e-46 188.0 192 53.6
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 7.3e-46 188.0 193 51.3
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 2.1e-45 186.4 188 47.3
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 3.6e-45 185.7 146 61.6
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 6.2e-45 184.9 192 49.0
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 6.2e-45 184.9 174 54.6
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 8.0e-45 184.5 191 52.9
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.8e-44 183.3 189 47.6
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 3.1e-44 182.6 194 50.0
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 4.0e-44 182.2 189 49.2
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 4.0e-44 182.2 189 47.1
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 5.2e-44 181.8 193 49.7
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.0e-43 179.9 173 53.2
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 5.8e-43 178.3 189 47.1
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 9.8e-43 177.6 177 55.9
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.7e-42 176.8 189 48.1
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 2.2e-42 176.4 196 45.9
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 2.9e-42 176.0 196 45.9
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 2.9e-42 176.0 192 47.9
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.7e-42 175.6 196 50.0
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 3.7e-42 175.6 184 49.5
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 4.9e-42 175.3 190 47.9
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 6.4e-42 174.9 195 48.7
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 6.4e-42 174.9 171 54.4
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 8.3e-42 174.5 142 59.9
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 1.1e-41 174.1 187 46.5
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 1.1e-41 174.1 191 48.2
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.9e-41 173.3 189 49.2
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 3.2e-41 172.6 187 44.4
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 3.2e-41 172.6 157 54.1
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.2e-40 170.6 195 48.2
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 2.1e-40 169.9 188 45.2
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.7e-39 166.8 191 46.1
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 8.6e-39 164.5 191 45.5
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 1.1e-38 164.1 191 45.0
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.2e-37 160.6 194 42.8
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 2.1e-37 159.8 197 46.2
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 4.7e-37 158.7 196 42.9
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 4.7e-37 158.7 136 55.9
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 4.0e-36 155.6 162 51.9
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 2.0e-35 153.3 193 45.1
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.8e-35 151.8 197 43.1
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 9.9e-35 151.0 191 42.4
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 9.9e-35 151.0 173 46.8
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 9.9e-35 151.0 198 43.4
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.3e-34 150.6 197 43.7
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 1.7e-34 150.2 198 43.4
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 6.4e-34 148.3 162 48.1
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 5.4e-33 145.2 187 43.3
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 1.2e-32 144.1 127 54.3
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 4.6e-32 142.1 127 55.9
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.3e-31 140.6 165 49.7
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.9e-30 136.7 141 48.2
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.6e-30 135.2 190 42.1
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.4e-28 130.6 130 49.2
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.8e-28 130.2 166 49.4
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.4e-28 129.8 148 48.0
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.9e-26 122.1 153 44.4
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 8.4e-26 121.3 197 38.6
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 1.6e-24 117.1 113 52.2
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.7e-23 113.6 197 38.6
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 1.7e-23 113.6 87 69.0
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.3e-22 109.4 76 73.7
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 2.8e-21 106.3 194 38.1
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 8.4e-18 94.7 108 49.1
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.0e-15 86.3 185 33.0
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 6.2e-13 78.6 105 44.8
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 1.1e-12 77.8 159 33.3
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 1.5e-11 73.9 183 30.6
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 4.5e-11 72.4 189 30.7
Solyc04g040020.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 5.8e-11 72.0 49 71.4
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 1.7e-10 70.5 204 25.5
Nitab4.5_0002521g0060 Nicotiana tabacum HOM05D015872 ORTHO05D284606 2.2e-10 70.1 40 90.0
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 7.1e-09 65.1 209 25.4
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 7.9e-08 61.6 92 41.3
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 3.9e-07 59.3 86 41.9


User provided reference genes

Program Settings