Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002156g0100 Nicotiana tabacum HOM05D002566 ORTHO05D282776 6.4e-38 160.2 79 100.0
Cc11_g09340 Coffea canephora HOM05D002566 ORTHO05D002897 1.4e-08 62.8 47 55.3
Actinidia14932 Actinidia chinensis HOM05D002566 ORTHO05D002897 2.4e-08 62.0 47 57.4
Actinidia16694 Actinidia chinensis HOM05D002566 ORTHO05D002897 2.4e-08 62.0 47 57.4
MD16G1035400 Malus domestica HOM05D002566 ORTHO05D002897 4.0e-08 61.2 47 55.3
Solyc04g080877.1 Solanum lycopersicum HOM05D002566 ORTHO05D002897 4.0e-08 61.2 50 58.0
Sopen04g034470 Solanum pennellii HOM05D002566 ORTHO05D002897 4.0e-08 61.2 50 58.0
Nitab4.5_0003886g0080 Nicotiana tabacum HOM05D002566 ORTHO05D002897 5.3e-08 60.8 47 55.3
Peaxi162Scf00205g01133 Petunia axillaris HOM05D002566 ORTHO05D002897 5.3e-08 60.8 47 55.3
MD13G1033500 Malus domestica HOM05D002566 ORTHO05D002897 6.9e-08 60.5 47 55.3
Dinv04914 Davidia involucrata HOM05D002566 ORTHO05D002897 1.2e-07 59.7 47 53.2
Migut.L01013 Erythranthe guttata HOM05D002566 ORTHO05D002897 1.2e-07 59.7 47 53.2
Prupe.1G319300 Prunus persica HOM05D002566 ORTHO05D002897 1.2e-07 59.7 47 55.3
unitig_0.g2338 Utricularia gibba HOM05D002566 ORTHO05D002897 1.2e-07 59.7 46 54.3
FvH4_4g26460 Fragaria vesca HOM05D002566 ORTHO05D002897 1.5e-07 59.3 49 53.1
Nitab4.5_0000350g0080 Nicotiana tabacum HOM05D002566 ORTHO05D002897 1.5e-07 59.3 53 50.9
SGA_v2.0_scaffold38G15028 Striga asiatica HOM05D002566 ORTHO05D002897 1.5e-07 59.3 47 53.2
Nn4g24005 Nelumbo nucifera HOM05D002566 ORTHO05D002897 2.0e-07 58.9 46 54.3
Dinv16156 Davidia involucrata HOM05D002566 ORTHO05D002897 2.6e-07 58.5 53 49.1
QL01p003157 Quercus lobata HOM05D002566 ORTHO05D002897 3.4e-07 58.2 52 50.0
THA.LOC104820375 Tarenaya hassleriana HOM05D002566 ORTHO05D002897 3.4e-07 58.2 53 50.9
GSVIVG01011812001 Vitis vinifera HOM05D002566 ORTHO05D002897 3.4e-07 58.2 47 48.9
MSTRG.7634 Avicennia marina HOM05D002566 ORTHO05D002897 4.5e-07 57.8 46 52.2
CAN.G1489.21 Capsicum annuum HOM05D002566 ORTHO05D002897 4.5e-07 57.8 46 52.2
CiPaw.06G015300 Carya illinoinensis HOM05D002566 ORTHO05D002897 4.5e-07 57.8 53 47.2
FAN12G1101 Fragaria x ananassa HOM05D002566 ORTHO05D002897 4.5e-07 57.8 72 41.7
Nitab4.5_0001861g0180 Nicotiana tabacum HOM05D002566 ORTHO05D002897 4.5e-07 57.8 43 55.8
Oeu057773.3 Olea europaea HOM05D002566 ORTHO05D002897 4.5e-07 57.8 47 48.9
vmacro10612 Vaccinium macrocarpon HOM05D002566 ORTHO05D002897 4.5e-07 57.8 47 53.2
PGSC0003DMG400030519 Solanum tuberosum HOM05D002566 ORTHO05D002897 5.8e-07 57.4 47 51.1
ATR0589G011 Amborella trichopoda HOM05D002566 ORTHO05D002897 7.6e-07 57.0 57 47.4
Os01g0502400 Oryza sativa ssp. japonica HOM05D002566 ORTHO05D002897 7.6e-07 57.0 47 51.1
Solyc05g008610.3 Solanum lycopersicum HOM05D002566 ORTHO05D002897 7.6e-07 57.0 47 48.9
Sopen05g004450 Solanum pennellii HOM05D002566 ORTHO05D002897 7.6e-07 57.0 47 48.9
SGA_v2.0_scaffold50G18553 Striga asiatica HOM05D002566 ORTHO05D002897 7.6e-07 57.0 44 54.5
CSS0039889 Camellia sinensis var. sinensis HOM05D002566 ORTHO05D002897 9.9e-07 56.6 47 51.1
CDE07G0021 Ceratophyllum demersum HOM05D002566 ORTHO05D002897 9.9e-07 56.6 47 46.8
Duzib160G0102 Durio zibethinus HOM05D002566 ORTHO05D002897 9.9e-07 56.6 47 53.2
Gorai.005G118000 Gossypium raimondii HOM05D002566 ORTHO05D002897 9.9e-07 56.6 47 53.2
Thecc.06G003400 Theobroma cacao HOM05D002566 ORTHO05D002897 9.9e-07 56.6 47 53.2
TAR622G1349 Trochodendron aralioides HOM05D002566 ORTHO05D002897 9.9e-07 56.6 47 51.1
GSVIVG01008354001 Vitis vinifera HOM05D002566 ORTHO05D002897 9.9e-07 56.6 47 48.9
CANSAT80G1736 Cannabis sativa HOM05D002566 ORTHO05D002897 1.3e-06 56.2 47 51.1
Gohir.A06G119700 Gossypium hirsutum HOM05D002566 ORTHO05D002897 1.3e-06 56.2 47 55.3
Gorai.010G144300 Gossypium raimondii HOM05D002566 ORTHO05D002897 1.3e-06 56.2 47 55.3
Lj6A751T56 Lonicera japonica HOM05D002566 ORTHO05D002897 1.3e-06 56.2 44 52.3
Cfa015822 Carpinus fangiana HOM05D002566 ORTHO05D002897 1.7e-06 55.8 53 45.3
Manes.14G108800 Manihot esculenta HOM05D002566 ORTHO05D002897 1.7e-06 55.8 47 48.9
Potri.015G043100 Populus trichocarpa HOM05D002566 ORTHO05D002897 1.7e-06 55.8 47 51.1
PGR044G0031 Punica granatum HOM05D002566 ORTHO05D002897 1.7e-06 55.8 53 47.2
Rhsim09G0102400 Rhododendron simsii HOM05D002566 ORTHO05D002897 1.7e-06 55.8 47 51.1
RcHm_v2.0_Chr4g0434101 Rosa chinensis HOM05D002566 ORTHO05D002897 1.7e-06 55.8 46 54.3
Sabra15G0042200 Salix brachista HOM05D002566 ORTHO05D002897 1.7e-06 55.8 47 51.1
TAR371G0265 Trochodendron aralioides HOM05D002566 ORTHO05D002897 1.7e-06 55.8 47 48.9
TAR371G0513 Trochodendron aralioides HOM05D002566 ORTHO05D002897 1.7e-06 55.8 47 48.9
Nitab4.5_0002156g0080 Nicotiana tabacum HOM05D002566 ORTHO05D002897 2.2e-06 55.5 46 54.3
RcHm_v2.0_Chr7g0179241 Rosa chinensis HOM05D002566 ORTHO05D002897 2.2e-06 55.5 52 46.2
Sed0022179 Sechium edule HOM05D002566 ORTHO05D002897 2.2e-06 55.5 47 53.2
EL10Ac3g05853 Beta vulgaris HOM05D002566 ORTHO05D002897 2.9e-06 55.1 47 51.1
AUR62015487 Chenopodium quinoa HOM05D002566 ORTHO05D002897 2.9e-06 55.1 47 48.9
MD14G1231400 Malus domestica HOM05D002566 ORTHO05D002897 2.9e-06 55.1 47 48.9
PGR102G0233 Punica granatum HOM05D002566 ORTHO05D002897 2.9e-06 55.1 53 47.2
TWI60G0135 Tripterygium wilfordii HOM05D002566 ORTHO05D002897 2.9e-06 55.1 47 51.1
CARHR023330 Cardamine hirsuta HOM05D002566 ORTHO05D002897 3.8e-06 54.7 47 44.7
FvH4_5g16830 Fragaria vesca HOM05D002566 ORTHO05D002897 3.8e-06 54.7 52 46.2
FAN08G0697 Fragaria x ananassa HOM05D002566 ORTHO05D002897 3.8e-06 54.7 52 46.2
FAN13G2250 Fragaria x ananassa HOM05D002566 ORTHO05D002897 3.8e-06 54.7 52 46.2
FAN18G0079 Fragaria x ananassa HOM05D002566 ORTHO05D002897 3.8e-06 54.7 52 46.2
Phvul.004G152800 Phaseolus vulgaris HOM05D002566 ORTHO05D002897 3.8e-06 54.7 46 50.0
VMungo0464G0984 Vigna mungo HOM05D002566 ORTHO05D002897 3.8e-06 54.7 46 50.0
CAN.G851.31 Capsicum annuum HOM05D002566 ORTHO05D002897 4.9e-06 54.3 50 42.0
CiPaw.15G138100 Carya illinoinensis HOM05D002566 ORTHO05D002897 4.9e-06 54.3 47 51.1
COL.COLO4_26850 Corchorus olitorius HOM05D002566 ORTHO05D002897 4.9e-06 54.3 47 51.1
Hma1.2p1_0114F.1_g055530 Hydrangea macrophylla HOM05D002566 ORTHO05D002897 4.9e-06 54.3 47 46.8
Lj3A878T23 Lonicera japonica HOM05D002566 ORTHO05D002897 4.9e-06 54.3 48 50.0
AUR62002212 Chenopodium quinoa HOM05D002566 ORTHO05D002897 6.4e-06 53.9 47 48.9
Glyma.09G179300 Glycine max HOM05D002566 ORTHO05D002897 6.4e-06 53.9 53 43.4
PSO063G4142 Papaver somniferum HOM05D002566 ORTHO05D002897 6.4e-06 53.9 47 46.8
PSO782G4436 Papaver somniferum HOM05D002566 ORTHO05D002897 6.4e-06 53.9 47 46.8
Hund13806 Selenicereus undatus HOM05D002566 ORTHO05D002897 6.4e-06 53.9 47 51.1
Ca_17230_v3 Cicer arietinum L. HOM05D002566 ORTHO05D002897 8.4e-06 53.5 54 44.4
MELO3C005334.2 Cucumis melo HOM05D002566 ORTHO05D002897 8.4e-06 53.5 47 51.1
CsaV3_5G028700 Cucumis sativus L. HOM05D002566 ORTHO05D002897 8.4e-06 53.5 47 51.1
Lsat_1_v5_gn_9_7541 Lactuca sativa HOM05D002566 ORTHO05D002897 8.4e-06 53.5 60 43.3
Medtr8g106610 Medicago truncatula HOM05D002566 ORTHO05D002897 8.4e-06 53.5 42 47.6
Phvul.007G033700 Phaseolus vulgaris HOM05D002566 ORTHO05D002897 8.4e-06 53.5 47 48.9
VMungo0720G2199 Vigna mungo HOM05D002566 ORTHO05D002897 8.4e-06 53.5 47 48.9


User provided reference genes

Program Settings