Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 8.7e-84 313.5 152 100.0
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 7.4e-83 310.5 152 98.7
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 7.4e-83 310.5 152 98.7
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 6.9e-81 303.9 152 96.1
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 1.2e-80 303.1 152 96.1
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.2e-80 303.1 152 96.1
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.0e-80 302.4 152 96.1
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 4.5e-80 301.2 152 96.1
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 3.8e-79 298.1 152 94.1
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 4.9e-79 297.7 152 94.7
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 1.1e-78 296.6 151 95.4
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 2.4e-78 295.4 148 96.6
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 3.2e-78 295.0 152 94.7
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 3.2e-78 295.0 152 93.4
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 3.2e-78 295.0 152 94.7
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 4.2e-78 294.7 150 94.0
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 4.2e-78 294.7 152 93.4
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 4.2e-78 294.7 144 98.6
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 5.5e-78 294.3 147 95.9
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 5.5e-78 294.3 147 95.9
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 5.5e-78 294.3 147 95.9
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 7.1e-78 293.9 147 95.2
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 7.1e-78 293.9 147 95.2
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 7.1e-78 293.9 152 92.8
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 7.1e-78 293.9 152 92.1
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 9.3e-78 293.5 152 92.8
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 9.3e-78 293.5 152 92.8
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 9.3e-78 293.5 150 93.3
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.2e-77 293.1 152 92.8
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.2e-77 293.1 152 92.8
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.2e-77 293.1 152 92.8
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 1.2e-77 293.1 152 92.1
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 1.2e-77 293.1 152 92.1
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.2e-77 293.1 147 95.2
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.2e-77 293.1 146 94.5
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.2e-77 293.1 146 94.5
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 1.6e-77 292.7 144 97.9
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 1.6e-77 292.7 147 95.2
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 1.6e-77 292.7 152 91.4
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 2.1e-77 292.4 152 92.1
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 92.1
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 91.4
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 91.4
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 3.5e-77 291.6 152 91.4
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 3.5e-77 291.6 152 91.4
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 3.5e-77 291.6 147 94.6
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 3.5e-77 291.6 149 94.0
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 3.5e-77 291.6 150 94.0
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 4.6e-77 291.2 152 92.1
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 4.6e-77 291.2 152 91.4
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 4.6e-77 291.2 147 93.9
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 4.6e-77 291.2 152 91.4
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 4.6e-77 291.2 147 93.2
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 6.0e-77 290.8 152 91.4
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 1.0e-76 290.0 147 93.9
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 1.0e-76 290.0 147 93.9
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 1.0e-76 290.0 152 91.4
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.0e-76 290.0 147 93.9
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 1.3e-76 289.7 147 93.2
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.8e-76 289.3 144 95.8
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 2.3e-76 288.9 147 93.2
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 3.0e-76 288.5 152 90.8
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 3.0e-76 288.5 152 91.4
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 5.1e-76 287.7 152 90.1
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 5.1e-76 287.7 147 92.5
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 5.1e-76 287.7 147 94.6
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 6.7e-76 287.3 147 92.5
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.1e-75 286.6 152 90.8
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 1.5e-75 286.2 150 92.7
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.9e-75 285.8 152 90.8
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 2.5e-75 285.4 147 91.8
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 3.3e-75 285.0 147 91.8
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.3e-75 284.6 147 91.2
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.3e-75 284.6 147 91.2
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.3e-75 284.6 147 91.2
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.3e-75 284.6 147 91.2
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.3e-75 284.6 147 91.2
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 4.3e-75 284.6 147 91.2
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 4.3e-75 284.6 150 92.0
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 5.6e-75 284.3 150 91.3
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 5.6e-75 284.3 151 91.4
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 5.6e-75 284.3 147 91.2
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 7.4e-75 283.9 147 92.5
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 7.4e-75 283.9 147 91.8
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 7.4e-75 283.9 147 91.8
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 9.6e-75 283.5 153 90.2
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 9.6e-75 283.5 147 90.5
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.3e-74 283.1 152 90.1
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 1.6e-74 282.7 144 93.1
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 1.6e-74 282.7 152 90.1
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.8e-74 282.0 152 90.1
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 2.8e-74 282.0 149 91.3
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 2.8e-74 282.0 149 91.3
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 3.7e-74 281.6 143 93.0
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 4.8e-74 281.2 147 91.2
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 1.1e-73 280.0 147 91.8
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 1.1e-73 280.0 147 91.8
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 1.8e-73 279.3 149 90.6
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 1.8e-73 279.3 149 90.6
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 5.3e-73 277.7 147 89.8
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 6.9e-73 277.3 150 88.0
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 9.0e-73 276.9 147 89.8
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 1.2e-72 276.6 143 90.2
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 1.5e-72 276.2 147 90.5
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 1.5e-72 276.2 151 86.8
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 1.5e-72 276.2 151 86.8
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.0e-72 275.8 134 99.3
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 4.5e-72 274.6 147 89.1
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 4.5e-72 274.6 143 90.9
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 5.8e-72 274.2 152 87.5
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 2.9e-71 271.9 157 86.0
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 2.9e-71 271.9 145 87.6
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 8.4e-71 270.4 132 97.7
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.4e-70 269.6 149 88.6
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 2.5e-70 268.9 132 97.7
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 9.3e-70 266.9 140 90.7
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 2.7e-69 265.4 143 88.1
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 3.5e-69 265.0 132 95.5
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.9e-67 259.2 134 92.5
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 2.5e-67 258.8 132 93.2
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 4.3e-67 258.1 132 92.4
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 5.7e-67 257.7 127 95.3
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 7.4e-67 257.3 134 94.0
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 9.6e-67 256.9 134 91.0
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 1.3e-66 256.5 130 93.1
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 1.3e-66 256.5 130 93.1
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 3.7e-66 255.0 132 91.7
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.8e-65 252.7 127 92.9
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 2.4e-65 252.3 131 91.6
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 3.1e-65 251.9 132 90.9
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 5.3e-65 251.1 127 92.9
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 5.3e-65 251.1 144 85.4
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 6.9e-65 250.8 127 92.9
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 2.0e-64 249.2 149 81.9
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 2.0e-64 249.2 149 81.9
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 3.4e-64 248.4 141 83.0
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 3.4e-64 248.4 127 92.1
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 4.5e-64 248.1 152 80.9
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 7.6e-64 247.3 142 84.5
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 2.2e-63 245.7 128 89.1
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.9e-63 245.4 147 81.6
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.8e-63 245.0 132 88.6
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 1.2e-61 240.0 144 75.0
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 2.7e-61 238.8 145 74.5
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 3.3e-59 231.9 151 73.5
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 1.4e-57 226.5 157 73.2
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 1.2e-53 213.4 186 60.2
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 2.0e-51 206.1 116 83.6
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.0e-51 206.1 144 72.2
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 9.7e-51 203.8 119 80.7
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 1.3e-50 203.4 103 96.1
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 1.4e-49 199.9 103 94.2
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 2.4e-49 199.1 103 93.2
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 1.3e-47 193.4 116 76.7
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 2.0e-43 179.5 87 95.4
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 1.8e-41 172.9 115 79.1
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 1.1e-38 163.7 87 83.9
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 2.7e-37 159.1 78 92.3
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 4.7e-37 158.3 81 93.8
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 5.2e-36 154.8 142 60.6
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 5.3e-33 144.8 73 95.9
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 3.6e-29 132.1 69 84.1
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.0e-28 130.6 71 88.7
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 8.8e-28 127.5 71 87.3
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 4.4e-27 125.2 71 85.9
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 4.1e-25 118.6 76 77.6
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 7.8e-16 87.8 45 93.3
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 6.6e-15 84.7 46 87.0
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 1.8e-12 76.6 74 55.4


User provided reference genes

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