Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002138g0020 Nicotiana tabacum HOM05D006898 ORTHO05D008506 7.9e-250 866.7 451 100.0
Nitab4.5_0001582g0070 Nicotiana tabacum HOM05D006898 ORTHO05D008506 2.8e-231 805.1 451 91.8
Sopen11g001550 Solanum pennellii HOM05D006898 ORTHO05D008506 2.0e-205 719.2 451 83.6
Solyc11g005580.1 Solanum lycopersicum HOM05D006898 ORTHO05D008506 8.6e-204 713.8 451 82.9
PGSC0003DMG400003978 Solanum tuberosum HOM05D006898 ORTHO05D008506 8.6e-204 713.8 451 82.9
Peaxi162Scf00025g02821 Petunia axillaris HOM05D006898 ORTHO05D008506 3.6e-202 708.4 460 81.5
CAN.G476.10 Capsicum annuum HOM05D006898 ORTHO05D008506 2.0e-197 692.6 458 80.8
Migut.A00518 Erythranthe guttata HOM05D006898 ORTHO05D008506 1.4e-142 510.4 448 60.7
Hma1.2p1_0214F.1_g090725 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 8.7e-140 501.1 373 69.4
SalBow4G3225 Salvia bowleyana HOM05D006898 ORTHO05D008506 1.1e-137 494.2 375 68.5
Oeu007490.1 Olea europaea HOM05D006898 ORTHO05D008506 2.0e-136 490.0 344 73.0
QL12p024620 Quercus lobata HOM05D006898 ORTHO05D008506 3.4e-136 489.2 373 68.1
Rhsim07G0174000 Rhododendron simsii HOM05D006898 ORTHO05D008506 9.3e-134 481.1 438 61.0
SGA_v2.0_scaffold27G11702 Striga asiatica HOM05D006898 ORTHO05D008506 1.0e-132 477.6 450 58.9
Prupe.1G463000 Prunus persica HOM05D006898 ORTHO05D008506 1.8e-132 476.9 384 65.9
DCAR_004547 Daucus carota HOM05D006898 ORTHO05D008506 3.0e-132 476.1 378 66.1
Actinidia03566 Actinidia chinensis HOM05D006898 ORTHO05D008506 1.9e-131 473.4 376 67.6
RcHm_v2.0_Chr6g0312281 Rosa chinensis HOM05D006898 ORTHO05D008506 3.7e-130 469.2 375 65.9
FAN15G2927 Fragaria x ananassa HOM05D006898 ORTHO05D008506 8.2e-130 468.0 370 66.2
FAN24G1534 Fragaria x ananassa HOM05D006898 ORTHO05D008506 2.4e-129 466.5 370 65.9
FvH4_2g30630 Fragaria vesca HOM05D006898 ORTHO05D008506 6.9e-129 464.9 370 65.9
AUR62028029 Chenopodium quinoa HOM05D006898 ORTHO05D008506 9.0e-129 464.5 380 63.7
PGR142G0710 Punica granatum HOM05D006898 ORTHO05D008506 1.2e-128 464.2 399 62.2
Ah.10g033620 Amaranthus hybridus HOM05D006898 ORTHO05D008506 2.6e-128 463.0 381 63.3
Potri.005G179700 Populus trichocarpa HOM05D006898 ORTHO05D008506 2.6e-128 463.0 379 64.6
EL10Ac2g03651 Beta vulgaris HOM05D006898 ORTHO05D008506 7.7e-128 461.5 378 64.0
CiPaw.07G215200 Carya illinoinensis HOM05D006898 ORTHO05D008506 7.7e-128 461.5 377 64.7
Sc06g0001380 Simmondsia chinensis HOM05D006898 ORTHO05D008506 1.0e-127 461.1 377 63.1
Dinv09447 Davidia involucrata HOM05D006898 ORTHO05D008506 2.2e-127 459.9 344 69.2
Hund19373 Selenicereus undatus HOM05D006898 ORTHO05D008506 2.2e-127 459.9 388 63.9
Haze_21680 Corylus avellana HOM05D006898 ORTHO05D008506 3.8e-127 459.1 403 62.3
ECA246G1941 Erigeron canadensis HOM05D006898 ORTHO05D008506 3.8e-127 459.1 372 65.1
HanXRQChr17g0538631 Helianthus annuus HOM05D006898 ORTHO05D008506 1.9e-126 456.8 376 64.6
Lj8A413G21 Lonicera japonica HOM05D006898 ORTHO05D008506 7.2e-126 454.9 423 59.1
Atru.chr7.2715 Acer truncatum HOM05D006898 ORTHO05D008506 1.8e-124 450.3 349 67.0
Aqoxy7G02535 Aquilegia oxysepala HOM05D006898 ORTHO05D008506 1.8e-124 450.3 355 64.2
unitig_748.g8163 Utricularia gibba HOM05D006898 ORTHO05D008506 1.8e-124 450.3 373 63.5
vmacro05087 Vaccinium macrocarpon HOM05D006898 ORTHO05D008506 8.8e-124 448.0 472 54.4
Medtr1g010070 Medicago truncatula HOM05D006898 ORTHO05D008506 2.0e-123 446.8 394 61.9
Sabra05G0135900 Salix brachista HOM05D006898 ORTHO05D008506 3.3e-123 446.0 373 62.7
Ca_12885_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 4.3e-123 445.7 414 58.9
Psat6g031720 Pisum sativum HOM05D006898 ORTHO05D008506 5.7e-123 445.3 382 62.0
TPR.G12020 Trifolium pratense HOM05D006898 ORTHO05D008506 6.3e-122 441.8 380 62.1
Duzib168G1571 Durio zibethinus HOM05D006898 ORTHO05D008506 8.2e-122 441.4 388 60.8
CDE06G0577 Ceratophyllum demersum HOM05D006898 ORTHO05D008506 2.4e-121 439.9 374 59.9
PSO170G2692 Papaver somniferum HOM05D006898 ORTHO05D008506 2.4e-121 439.9 380 63.7
VMungo0647G2166 Vigna mungo HOM05D006898 ORTHO05D008506 2.4e-121 439.9 382 61.8
Sed0005742 Sechium edule HOM05D006898 ORTHO05D008506 5.3e-121 438.7 399 60.4
Lalb_Chr22g0361311 Lupinus albus HOM05D006898 ORTHO05D008506 2.6e-120 436.4 404 58.9
PSO017G3342 Papaver somniferum HOM05D006898 ORTHO05D008506 2.6e-120 436.4 380 62.1
Eucgr.C02146 Eucalyptus grandis HOM05D006898 ORTHO05D008506 3.4e-120 436.0 331 66.5
GSVIVG01035599001 Vitis vinifera HOM05D006898 ORTHO05D008506 2.9e-119 433.0 355 65.4
Lsat_1_v5_gn_3_25521 Lactuca sativa HOM05D006898 ORTHO05D008506 3.8e-119 432.6 338 66.3
Thecc.09G001800 Theobroma cacao HOM05D006898 ORTHO05D008506 3.8e-119 432.6 349 64.2
MD15G1110800 Malus domestica HOM05D006898 ORTHO05D008506 8.5e-119 431.4 345 65.8
Lj5g0012927 Lotus japonicus HOM05D006898 ORTHO05D008506 1.1e-118 431.0 371 59.8
ATR0626G384 Amborella trichopoda HOM05D006898 ORTHO05D008506 1.9e-118 430.3 387 58.1
Glyma.11G174910 Glycine max HOM05D006898 ORTHO05D008506 3.2e-118 429.5 416 58.2
Glyma.14G132300 Glycine max HOM05D006898 ORTHO05D008506 3.2e-118 429.5 415 58.6
Phvul.001G057500 Phaseolus vulgaris HOM05D006898 ORTHO05D008506 3.2e-118 429.5 401 59.4
Carub.0006s0940 Capsella rubella HOM05D006898 ORTHO05D008506 9.4e-118 427.9 390 59.2
AL6G21470 Arabidopsis lyrata HOM05D006898 ORTHO05D008506 3.6e-117 426.0 378 59.8
Ciclev10008259m.g Citrus clementina HOM05D006898 ORTHO05D008506 1.0e-116 424.5 347 64.3
AT5G10910 Arabidopsis thaliana HOM05D006898 ORTHO05D008506 1.4e-116 424.1 378 59.3
ClCG05G017390 Citrullus lanatus HOM05D006898 ORTHO05D008506 3.9e-116 422.5 405 59.0
arahy.Tifrunner.gnm1.ann1.TJ47BC Arachis hypogaea HOM05D006898 ORTHO05D008506 6.7e-116 421.8 352 62.2
Sp6g32580 Schrenkiella parvula HOM05D006898 ORTHO05D008506 1.5e-115 420.6 377 59.2
arahy.Tifrunner.gnm1.ann1.UC5PKR Arachis hypogaea HOM05D006898 ORTHO05D008506 2.0e-115 420.2 352 62.8
CARHR202380 Cardamine hirsuta HOM05D006898 ORTHO05D008506 4.4e-115 419.1 381 58.5
Thhalv10013596m.g Eutrema salsugineum HOM05D006898 ORTHO05D008506 4.4e-115 419.1 383 58.7
TWI31G0903 Tripterygium wilfordii HOM05D006898 ORTHO05D008506 4.4e-115 419.1 369 60.4
COL.COLO4_18635 Corchorus olitorius HOM05D006898 ORTHO05D008506 1.7e-114 417.2 406 55.9
Gohir.D07G001300 Gossypium hirsutum HOM05D006898 ORTHO05D008506 2.8e-114 416.4 387 59.9
MELO3C003647.2 Cucumis melo HOM05D006898 ORTHO05D008506 3.7e-114 416.0 414 57.7
CsaV3_3G046900 Cucumis sativus L. HOM05D006898 ORTHO05D008506 3.7e-114 416.0 379 60.2
AUR62020696 Chenopodium quinoa HOM05D006898 ORTHO05D008506 1.4e-113 414.1 388 57.5
C09p65920 Brassica napus HOM05D006898 ORTHO05D008506 5.3e-113 412.1 375 59.2
Gorai.001G001000 Gossypium raimondii HOM05D006898 ORTHO05D008506 7.0e-113 411.8 386 59.1
Os02g0137600 Oryza sativa ssp. japonica HOM05D006898 ORTHO05D008506 7.0e-113 411.8 455 51.9
THA.LOC104824957 Tarenaya hassleriana HOM05D006898 ORTHO05D008506 7.0e-113 411.8 374 59.6
FAN20G2020 Fragaria x ananassa HOM05D006898 ORTHO05D008506 1.2e-112 411.0 344 63.4
BcaC04g19278 Brassica carinata HOM05D006898 ORTHO05D008506 5.9e-112 408.7 347 61.4
A10p26780 Brassica napus HOM05D006898 ORTHO05D008506 2.2e-111 406.8 372 58.3
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 5.0e-111 405.6 376 58.0
Gohir.A07G000900 Gossypium hirsutum HOM05D006898 ORTHO05D008506 5.0e-111 405.6 349 62.5
BolC9t59415H Brassica oleracea HOM05D006898 ORTHO05D008506 1.9e-110 403.7 347 60.5
HPP92_018581 Vanilla planifolia HOM05D006898 ORTHO05D008506 5.5e-110 402.1 402 54.0
Manes.02G165600 Manihot esculenta HOM05D006898 ORTHO05D008506 1.2e-109 401.0 371 58.0
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 4.7e-109 399.1 349 59.6
CANSAT21G1714 Cannabis sativa HOM05D006898 ORTHO05D008506 4.4e-107 392.5 314 65.6
HPP92_018578 Vanilla planifolia HOM05D006898 ORTHO05D008506 3.1e-105 386.3 341 58.4
Lj8C418G2 Lonicera japonica HOM05D006898 ORTHO05D008506 8.8e-100 368.2 295 64.4
CSS0039012 Camellia sinensis var. sinensis HOM05D006898 ORTHO05D008506 2.2e-95 353.6 382 54.2
Nn5g26940 Nelumbo nucifera HOM05D006898 ORTHO05D008506 6.8e-92 342.0 398 51.3
Mapoly0071s0027 Marchantia polymorpha HOM05D006898 ORTHO05D008506 2.8e-90 336.7 398 47.7
MD08G1133300 Malus domestica HOM05D006898 ORTHO05D008506 1.2e-88 331.3 239 70.3
Pp3c15_22340 Physcomitrium patens HOM05D006898 ORTHO05D008506 6.1e-85 318.9 365 49.3
TAR383G0625 Trochodendron aralioides HOM05D006898 ORTHO05D008506 8.9e-84 315.1 349 53.0
Glyma.17G200800 Glycine max HOM05D006898 ORTHO05D008506 6.6e-79 298.9 270 59.6
FAN20G0784 Fragaria x ananassa HOM05D006898 ORTHO05D008506 7.3e-78 295.4 213 71.4
Cc03_g11200 Coffea canephora HOM05D006898 ORTHO05D008506 2.0e-75 287.3 208 71.6
Cre13.g568150 Chlamydomonas reinhardtii HOM05D006898 ORTHO05D008506 1.2e-67 261.5 348 44.8
Cpa.g.sc117.17 Carica papaya HOM05D006898 ORTHO05D008506 6.4e-66 255.8 210 65.2
SMO119G0345 Selaginella moellendorffii HOM05D006898 ORTHO05D008506 3.5e-64 250.0 387 40.1
Cc03_g11180 Coffea canephora HOM05D006898 ORTHO05D008506 8.6e-63 245.4 247 54.3
MCO14G201 Micromonas commoda HOM05D006898 ORTHO05D008506 3.3e-62 243.4 351 39.9
AagrBONN_evm.TU.Sc2ySwM_362.1618 Anthoceros agrestis HOM05D006898 ORTHO05D008506 1.3e-58 231.5 220 53.6
PRCOL_00004989 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 2.7e-56 223.8 354 40.1
Zm00001eb231840 Zea mays HOM05D006898 ORTHO05D008506 8.4e-34 149.1 179 49.7
Ca_29432_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 2.9e-26 124.0 245 35.9
Cc00_g34780 Coffea canephora HOM05D006898 ORTHO05D008506 1.9e-25 121.3 102 59.8
QL07p037905 Quercus lobata HOM05D006898 ORTHO05D008506 2.5e-25 120.9 90 68.9
Hma1.2p1_2279F.1_g318700 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 6.7e-23 112.8 93 60.2
AagrBONN_evm.TU.Sc2ySwM_228.2079 Anthoceros agrestis HOM05D006898 ORTHO05D008506 1.1e-17 95.5 105 48.6
CBR_g40185 Chara braunii HOM05D000019 ORTHO05D001702 2.1e-16 91.3 157 43.3
MCO07G214 Micromonas commoda HOM05D006898 ORTHO05D008506 3.3e-14 84.0 356 26.1
PRCOL_00003584 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 7.4e-14 82.8 350 27.7
VMungo1309G1975 Vigna mungo HOM05D006898 ORTHO05D008506 1.4e-12 78.6 120 43.3
Actinidia29335 Actinidia chinensis HOM05D006898 ORTHO05D008506 1.5e-11 75.1 125 36.8
HanXRQChr08g0214621 Helianthus annuus HOM05D006898 ORTHO05D008506 2.5e-06 57.8 38 68.4


User provided reference genes

Program Settings