Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1140.6 536 100.0
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 7.9e-289 996.5 572 82.9
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 1.3e-288 995.7 572 82.7
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 6.2e-286 986.9 535 88.8
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 5.3e-285 983.8 572 82.0
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 8.7e-280 966.5 549 83.1
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 9.4e-242 840.1 568 66.9
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 5.2e-232 807.7 568 64.8
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 2.6e-231 805.4 568 63.9
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 2.0e-228 795.8 571 63.6
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 5.9e-228 794.3 569 64.7
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 9.4e-226 786.9 567 63.0
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 3.6e-225 785.0 569 62.4
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 1.8e-224 782.7 568 62.1
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 3.0e-224 781.9 568 62.9
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 4.0e-224 781.6 573 63.0
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 6.8e-224 780.8 568 62.1
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 2.6e-223 778.9 569 62.0
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 2.6e-223 778.9 560 63.0
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 7.5e-223 777.3 568 62.1
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 2.2e-222 775.8 568 61.8
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 2.8e-222 775.4 575 62.1
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 6.3e-222 774.2 568 62.3
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 1.8e-221 772.7 567 63.0
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 1.8e-221 772.7 568 61.1
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 5.4e-221 771.2 569 61.2
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 9.2e-221 770.4 568 61.3
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 3.5e-220 768.5 569 61.5
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 2.3e-219 765.8 570 61.2
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 1.5e-218 763.1 568 60.6
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 1.5e-218 763.1 567 60.7
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 5.6e-218 761.1 568 61.1
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 5.6e-218 761.1 568 60.4
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 1.6e-217 759.6 568 60.2
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 2.1e-217 759.2 567 60.1
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 3.6e-217 758.4 569 60.5
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 1.4e-216 756.5 567 60.7
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 3.0e-216 755.4 569 61.0
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 6.8e-216 754.2 568 59.9
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 2.9e-214 748.8 568 60.2
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 4.9e-214 748.0 620 57.1
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 1.1e-213 746.9 568 60.2
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 1.1e-213 746.9 569 59.8
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 1.4e-213 746.5 569 59.6
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 1.4e-213 746.5 571 59.7
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 1.8e-213 746.1 569 59.9
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 2.4e-213 745.7 568 59.5
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 9.2e-213 743.8 569 59.8
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 1.2e-212 743.4 568 60.4
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 2.7e-212 742.3 572 59.6
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 3.5e-212 741.9 579 60.1
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 4.6e-212 741.5 568 59.5
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 5.9e-212 741.1 568 60.4
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 5.9e-212 741.1 570 59.1
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 1.3e-211 740.0 570 60.4
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 1.7e-211 739.6 568 59.3
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 3.0e-211 738.8 568 59.5
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 8.6e-211 737.3 550 61.1
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 1.5e-210 736.5 568 59.3
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 9.5e-210 733.8 567 60.0
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 1.6e-209 733.0 568 59.3
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 1.6e-209 733.0 569 58.3
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 2.1e-209 732.6 568 59.3
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 2.1e-209 732.6 568 59.0
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 3.6e-209 731.9 568 59.5
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 4.7e-209 731.5 568 59.7
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 6.2e-209 731.1 562 59.1
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 1.4e-208 729.9 568 59.2
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 3.1e-208 728.8 585 58.6
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 2.6e-207 725.7 568 58.5
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 6.4e-206 721.1 560 59.1
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 6.4e-206 721.1 554 59.6
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 1.1e-205 720.3 568 58.5
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 5.4e-205 718.0 568 58.5
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 5.4e-205 718.0 568 58.5
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 1.6e-204 716.5 570 57.9
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 2.7e-204 715.7 562 58.9
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 1.0e-203 713.8 548 60.6
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 1.3e-203 713.4 561 58.8
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 1.7e-203 713.0 569 57.5
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 4.3e-202 708.4 568 57.6
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 9.5e-202 707.2 580 57.6
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 1.6e-201 706.4 561 58.6
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 1.6e-201 706.4 578 56.9
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 1.6e-201 706.4 568 57.2
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 3.1e-200 702.2 568 56.5
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 4.0e-200 701.8 568 56.7
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 8.9e-200 700.7 568 56.5
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 2.1e-193 679.5 568 56.0
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 6.8e-192 674.5 576 55.6
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 2.0e-191 672.9 575 56.0
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 4.1e-189 665.2 569 55.7
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 6.0e-188 661.4 571 53.2
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 2.0e-183 646.4 543 55.4
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 2.8e-169 599.4 533 55.3
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 1.2e-159 567.4 567 49.6
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 1.1e-157 560.8 602 45.7
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 1.1e-152 544.3 584 45.9
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 9.1e-144 514.6 579 45.1
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 5.5e-141 505.4 597 44.2
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 4.1e-120 436.0 354 57.1
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 3.7e-89 333.2 193 75.1
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 6.0e-79 299.3 257 53.7
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 4.9e-73 279.6 208 63.9
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 1.5e-66 258.1 136 83.1
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.6e-60 238.0 211 50.7
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 3.4e-58 230.3 431 32.7
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 6.4e-57 226.1 125 78.4
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 4.5e-50 203.4 839 25.0
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 2.8e-36 157.5 124 56.5
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 5.3e-35 153.3 79 84.8
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 3.4e-34 150.6 136 49.3
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 3.4e-34 150.6 107 62.6
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 1.4e-32 145.2 162 45.1
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 1.8e-30 138.3 69 79.7
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 1.1e-29 135.6 70 77.1
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.9e-29 134.8 69 78.3
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 1.0e-25 122.5 134 44.8
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 2.3e-22 111.3 95 55.8
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 2.3e-22 111.3 82 58.5
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 3.0e-22 110.9 66 66.7
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 4.2e-16 90.5 86 48.8
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 7.2e-16 89.7 104 42.3
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 1.2e-15 89.0 84 47.6
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 1.0e-14 85.9 45 73.3
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 1.4e-14 85.5 88 47.7
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 6.7e-14 83.2 45 73.3
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 5.7e-13 80.1 45 68.9
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 3.5e-10 70.9 43 67.4
Lsat_1_v5_gn_2_15720 Lactuca sativa HOM05D001670 ORTHO05D016190 6.1e-07 60.1 38 65.8
Lsat_1_v5_gn_1_71901 Lactuca sativa HOM05D017333 ORTHO05D017063 8.0e-07 59.7 36 69.4
Lsat_1_v5_gn_5_41360 Lactuca sativa HOM05D000207 ORTHO05D016190 1.4e-06 58.9 38 63.2
Lsat_1_v5_gn_1_91120 Lactuca sativa HOM05D002740 ORTHO05D003126 1.8e-06 58.5 58 51.7
Lsat_1_v5_gn_1_88920 Lactuca sativa HOM05D000207 ORTHO05D001482 3.0e-06 57.8 43 55.8
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 3.0e-06 57.8 38 60.5
Lsat_1_v5_gn_4_164861 Lactuca sativa HOM05D001159 ORTHO05D001712 3.0e-06 57.8 36 66.7
Lsat_1_v5_gn_8_34420 Lactuca sativa HOM05D000274 ORTHO05D001466 4.0e-06 57.4 37 64.9
Lsat_1_v5_gn_5_54380 Lactuca sativa HOM05D000274 ORTHO05D001466 5.2e-06 57.0 37 64.9
Lsat_1_v5_gn_8_57801 Lactuca sativa HOM05D002290 ORTHO05D017063 6.7e-06 56.6 35 65.7


User provided reference genes

Program Settings