Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002098g0040 Nicotiana tabacum HOM05D002704 ORTHO05D002891 7.2e-107 390.6 195 100.0
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.7e-76 289.7 186 80.1
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 3.9e-44 182.2 187 55.6
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 2.6e-40 169.5 208 46.2
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 7.6e-40 167.9 208 50.0
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 8.4e-39 164.5 193 50.8
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 3.2e-38 162.5 189 54.5
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 1.2e-37 160.6 210 47.6
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 1.6e-37 160.2 204 46.1
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 6.0e-37 158.3 188 54.8
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 1.5e-35 153.7 208 46.2
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 2.8e-34 149.4 195 48.2
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 3.1e-33 146.0 209 42.1
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 6.9e-33 144.8 185 47.6
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 1.2e-32 144.1 217 43.8
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 1.5e-32 143.7 200 47.5
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 3.4e-32 142.5 218 44.0
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 5.8e-32 141.7 180 48.9
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 9.9e-32 141.0 190 45.8
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 1.3e-31 140.6 191 49.2
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 5.4e-30 135.2 177 46.3
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 9.3e-30 134.4 209 42.1
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 9.3e-30 134.4 188 46.3
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 9.3e-30 134.4 214 41.1
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 2.7e-29 132.9 201 43.8
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 4.6e-29 132.1 180 46.1
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 4.6e-29 132.1 188 45.7
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 6.0e-29 131.7 205 41.5
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 7.8e-29 131.3 192 45.3
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 1.0e-28 131.0 205 43.9
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 1.7e-28 130.2 215 44.7
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 5.1e-28 128.6 210 42.9
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 6.6e-28 128.3 193 41.5
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 8.7e-28 127.9 225 39.1
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 8.7e-28 127.9 190 44.2
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 3.3e-27 125.9 206 39.8
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 1.3e-26 124.0 189 41.8
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 4.8e-26 122.1 171 43.3
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 8.1e-26 121.3 207 38.6
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 1.4e-25 120.6 182 44.0
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 2.4e-25 119.8 159 45.9
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 4.0e-25 119.0 193 39.9
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 9.0e-25 117.9 186 40.3
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 2.2e-23 113.2 190 41.1
unitig_578.g16524 Utricularia gibba HOM05D002704 ORTHO05D002891 6.4e-23 111.7 169 43.8
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 8.4e-23 111.3 189 40.2
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 1.1e-22 110.9 181 40.9
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.4e-22 110.5 201 40.8
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 3.2e-22 109.4 182 37.9
unitig_8.g4838 Utricularia gibba HOM05D002704 ORTHO05D002891 7.1e-22 108.2 194 37.1
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 9.3e-22 107.8 216 38.9
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 1.2e-21 107.5 198 38.9
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 6.0e-21 105.1 196 41.3
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 1.0e-20 104.4 187 38.5
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 1.3e-20 104.0 206 39.3
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 2.3e-20 103.2 211 35.5
CiPaw.07G180300 Carya illinoinensis HOM05D002704 ORTHO05D002891 3.0e-20 102.8 196 40.3
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 5.1e-20 102.1 206 34.0
AUR62038516 Chenopodium quinoa HOM05D002704 ORTHO05D002891 1.1e-19 100.9 201 36.8
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 1.9e-19 100.1 186 36.6
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 1.9e-19 100.1 183 37.7
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 2.5e-19 99.8 193 35.8
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 2.5e-19 99.8 206 34.0
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 2.5e-19 99.8 194 39.2
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 2.5e-19 99.8 199 35.7
unitig_578.g16200 Utricularia gibba HOM05D002704 ORTHO05D002891 2.5e-19 99.8 183 39.9
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 3.3e-19 99.4 185 38.4
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 9.6e-19 97.8 207 34.3
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 2.8e-18 96.3 186 37.1
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 4.8e-18 95.5 183 36.1
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 4.8e-18 95.5 176 36.9
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 6.2e-18 95.1 192 33.9
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 6.2e-18 95.1 192 37.5
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.1e-17 94.4 192 36.5
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 1.8e-17 93.6 181 37.6
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 2.4e-17 93.2 192 36.5
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 3.1e-17 92.8 192 36.5
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 5.3e-17 92.0 192 36.5
VMungo1309G0496 Vigna mungo HOM05D002704 ORTHO05D002891 5.3e-17 92.0 185 38.9
CARHR071630 Cardamine hirsuta HOM05D002704 ORTHO05D002891 6.9e-17 91.7 173 37.0
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 6.9e-17 91.7 177 35.6
ECA232G3648 Erigeron canadensis HOM05D002704 ORTHO05D000131 6.9e-17 91.7 185 37.8
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 6.9e-17 91.7 174 37.4
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 9.0e-17 91.3 195 36.9
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 1.2e-16 90.9 188 38.3
Phvul.009G030900 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 1.2e-16 90.9 183 38.8
Thhalv10019097m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 1.5e-16 90.5 163 38.7
AL2G38480 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 2.0e-16 90.1 152 39.5
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 4.5e-16 89.0 190 34.2
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 4.5e-16 89.0 196 33.2
AT1G78170 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 7.6e-16 88.2 158 36.1
BcaB03g15984 Brassica carinata HOM05D002704 ORTHO05D002891 7.6e-16 88.2 192 36.5
Sp5g33290 Schrenkiella parvula HOM05D002704 ORTHO05D002891 7.6e-16 88.2 157 38.2
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 1.3e-15 87.4 193 34.2
Ca_15248_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 2.2e-15 86.7 124 41.9
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 2.9e-15 86.3 142 38.0
A07p27670 Brassica napus HOM05D002704 ORTHO05D002891 3.8e-15 85.9 157 39.5
BraA07t30408Z Brassica rapa HOM05D002704 ORTHO05D002891 3.8e-15 85.9 155 41.3
Sabra05G0124600 Salix brachista HOM05D002704 ORTHO05D002891 4.9e-15 85.5 160 43.1
Lalb_Chr10g0102361 Lupinus albus HOM05D002704 ORTHO05D002891 6.4e-15 85.1 181 36.5
BcaC08g47392 Brassica carinata HOM05D002704 ORTHO05D002891 1.1e-14 84.3 187 35.3
C06p52120 Brassica napus HOM05D002704 ORTHO05D002891 1.1e-14 84.3 187 35.3
BolC6t40235H Brassica oleracea HOM05D002704 ORTHO05D002891 1.1e-14 84.3 187 35.3
THA.LOC104809714 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 1.1e-14 84.3 155 34.2
VMungo0647G0311 Vigna mungo HOM05D002704 ORTHO05D002891 1.1e-14 84.3 166 32.5
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 1.9e-14 83.6 216 31.0
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 4.2e-14 82.4 194 36.6
Eucgr.F02409 Eucalyptus grandis HOM05D002704 ORTHO05D002891 4.2e-14 82.4 217 31.8
Glyma.06G103700 Glycine max HOM05D002704 ORTHO05D002891 4.2e-14 82.4 189 33.9
Carub.0002s2506 Capsella rubella HOM05D002704 ORTHO05D002891 5.5e-14 82.0 171 35.7
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 5.5e-14 82.0 194 36.1
BcaB03g14224 Brassica carinata HOM05D002704 ORTHO05D002891 1.2e-13 80.9 191 33.0
Medtr3g074450 Medicago truncatula HOM05D002704 ORTHO05D002891 1.2e-13 80.9 119 42.9
TPR.G34534 Trifolium pratense HOM05D002704 ORTHO05D002891 1.2e-13 80.9 117 40.2
BcaB02g07152 Brassica carinata HOM05D002704 ORTHO05D002891 2.1e-13 80.1 180 33.3
BcaC08g45431 Brassica carinata HOM05D002704 ORTHO05D002891 2.1e-13 80.1 93 46.2
C06p30640 Brassica napus HOM05D002704 ORTHO05D002891 2.1e-13 80.1 93 46.2
BolC6t38228H Brassica oleracea HOM05D002704 ORTHO05D002891 2.1e-13 80.1 93 46.2
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 2.1e-13 80.1 176 34.7
Glyma.14G172800 Glycine max HOM05D002704 ORTHO05D002891 4.6e-13 79.0 201 32.8
Sed0023198 Sechium edule HOM05D002704 ORTHO05D002891 4.6e-13 79.0 177 37.3
Aa31LG7G6190 Aethionema arabicum HOM05D002704 ORTHO05D002891 7.9e-13 78.2 104 45.2
BraA02t07210Z Brassica rapa HOM05D002704 ORTHO05D002891 7.9e-13 78.2 154 36.4
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 7.9e-13 78.2 214 32.7
Glyma.04G102400 Glycine max HOM05D002704 ORTHO05D002891 7.9e-13 78.2 174 35.6
BcaB03g14223 Brassica carinata HOM05D002704 ORTHO05D002891 1.0e-12 77.8 189 32.3
A01p24680 Brassica napus HOM05D002704 ORTHO05D002891 1.0e-12 77.8 103 42.7
BraA01t02380Z Brassica rapa HOM05D002704 ORTHO05D002891 1.0e-12 77.8 103 42.7
BcaC06g34946 Brassica carinata HOM05D002704 ORTHO05D002891 1.3e-12 77.4 182 31.9
C07p21480 Brassica napus HOM05D002704 ORTHO05D002891 1.3e-12 77.4 182 31.9
BolC7t42674H Brassica oleracea HOM05D002704 ORTHO05D002891 1.3e-12 77.4 182 31.9
Lalb_Chr04g0253151 Lupinus albus HOM05D002704 ORTHO05D002891 1.3e-12 77.4 184 33.2
Phvul.008G173300 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 1.3e-12 77.4 196 30.6
Aa31LG4G8210 Aethionema arabicum HOM05D002704 ORTHO05D002891 1.8e-12 77.0 146 36.3
A07p14590 Brassica napus HOM05D002704 ORTHO05D002891 3.0e-12 76.3 156 34.6
BraA07t29205Z Brassica rapa HOM05D002704 ORTHO05D002891 3.0e-12 76.3 156 34.6
Thhalv10008815m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 3.0e-12 76.3 113 42.5
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 3.0e-12 76.3 114 42.1
BcaC05g26153 Brassica carinata HOM05D002704 ORTHO05D002891 3.9e-12 75.9 97 45.4
A09p42520 Brassica napus HOM05D002704 ORTHO05D002891 3.9e-12 75.9 124 39.5
C05p21380 Brassica napus HOM05D002704 ORTHO05D002891 3.9e-12 75.9 97 45.4
BraA09t39728Z Brassica rapa HOM05D002704 ORTHO05D002891 3.9e-12 75.9 124 39.5
CARHR022620 Cardamine hirsuta HOM05D002704 ORTHO05D002891 3.9e-12 75.9 114 43.0
BolC5t30835H Brassica oleracea HOM05D002704 ORTHO05D002891 5.1e-12 75.5 97 43.3
AT1G22250 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 6.7e-12 75.1 112 41.1
Carub.0001s2180 Capsella rubella HOM05D002704 ORTHO05D002891 1.1e-11 74.3 61 55.7
Sp1g19760 Schrenkiella parvula HOM05D002704 ORTHO05D002891 1.1e-11 74.3 124 37.9
A07p43470 Brassica napus HOM05D002704 ORTHO05D002891 1.5e-11 73.9 60 56.7
BraA07t31860Z Brassica rapa HOM05D002704 ORTHO05D002891 1.5e-11 73.9 60 56.7
Psat5g138480 Pisum sativum HOM05D002704 ORTHO05D002891 1.5e-11 73.9 184 32.1
Glyma.13G088900 Glycine max HOM05D002704 ORTHO05D002891 2.5e-11 73.2 198 33.8
THA.LOC104800151 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 2.5e-11 73.2 162 32.7
vmacro21275 Vaccinium macrocarpon HOM05D002704 ORTHO05D002891 2.5e-11 73.2 201 31.3
Lalb_Chr23g0270591 Lupinus albus HOM05D002704 ORTHO05D002891 3.3e-11 72.8 184 32.1
BcaB05g25124 Brassica carinata HOM05D002704 ORTHO05D002891 4.3e-11 72.4 154 35.1
PSO357G0625 Papaver somniferum HOM05D002704 ORTHO05D002891 4.3e-11 72.4 169 32.5
arahy.Tifrunner.gnm1.ann1.8HDV7G Arachis hypogaea HOM05D002704 ORTHO05D002891 5.6e-11 72.0 176 32.4
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 5.6e-11 72.0 187 32.1
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 9.6e-11 71.2 175 32.0
A02p22080 Brassica napus HOM05D002704 ORTHO05D002891 1.3e-10 70.9 150 33.3
Os03g0191200 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 1.3e-10 70.9 167 35.3
BcaB07g32247 Brassica carinata HOM05D002704 ORTHO05D002891 1.6e-10 70.5 181 33.1
PSO541G2691 Papaver somniferum HOM05D002704 ORTHO05D002891 1.6e-10 70.5 133 37.6
AL1G35710 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 2.1e-10 70.1 63 52.4
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 2.1e-10 70.1 201 30.3
HPP92_019307 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.1e-10 70.1 159 36.5
arahy.Tifrunner.gnm1.ann1.5JIN69 Arachis hypogaea HOM05D002704 ORTHO05D002891 2.8e-10 69.7 203 29.1
PSO781G0307 Papaver somniferum HOM05D002704 ORTHO05D002891 3.7e-10 69.3 126 38.1
Actinidia30768 Actinidia chinensis HOM05D002704 ORTHO05D002891 8.2e-10 68.2 164 35.4
BolC2t09563H Brassica oleracea HOM05D002704 ORTHO05D002891 1.1e-09 67.8 147 33.3
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 1.8e-09 67.0 174 29.9
Migut.N02898 Erythranthe guttata HOM05D002704 ORTHO05D002891 3.1e-09 66.2 180 32.8
SEGI_04164 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 3.1e-09 66.2 184 31.0
Lalb_Chr11g0065441 Lupinus albus HOM05D002704 ORTHO05D002891 5.3e-09 65.5 188 31.9
Zm00001eb006930 Zea mays HOM05D002704 ORTHO05D002891 5.3e-09 65.5 188 33.5
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 9.0e-09 64.7 183 32.2
PSO170G1174 Papaver somniferum HOM05D002704 ORTHO05D002891 9.0e-09 64.7 169 30.8
CDE12G0481 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.2e-08 64.3 140 33.6
AL6G41650 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 2.6e-08 63.2 173 31.8
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 2.6e-08 63.2 187 28.9
HPP92_011168 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.6e-08 63.2 167 32.3
HPP92_011170 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.6e-08 63.2 179 31.3
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 4.5e-08 62.4 207 30.9
AT4G08910 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 5.8e-08 62.0 181 29.8
arahy.Tifrunner.gnm1.ann1.AF75R2 Arachis hypogaea HOM05D002704 ORTHO05D002891 5.8e-08 62.0 158 32.3
Carub.0006s2748 Capsella rubella HOM05D002704 ORTHO05D002891 2.9e-07 59.7 169 28.4
Zm00001eb401340 Zea mays HOM05D002704 ORTHO05D002891 6.5e-07 58.5 157 30.6
THA.LOC104816761 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 1.4e-06 57.4 165 30.3
Zm00001eb411630 Zea mays HOM05D002704 ORTHO05D002891 7.1e-06 55.1 184 27.7


User provided reference genes

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