Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002043g0100 Nicotiana tabacum HOM05D006502 ORTHO05D007704 9.7e-130 466.8 239 100.0
Nitab4.5_0005492g0100 Nicotiana tabacum HOM05D006502 ORTHO05D007704 2.1e-39 166.8 97 85.6
Nitab4.5_0001756g0220 Nicotiana tabacum HOM05D006502 ORTHO05D007704 1.3e-38 164.1 97 83.5
Nitab4.5_0000062g0630 Nicotiana tabacum HOM05D006502 ORTHO05D007704 3.9e-38 162.5 97 83.5
Nitab4.5_0005345g0040 Nicotiana tabacum HOM05D002920 ORTHO05D003118 2.5e-37 159.8 104 79.8
Nitab4.5_0001171g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 1.6e-36 157.1 97 80.4
Nitab4.5_0000076g0270 Nicotiana tabacum HOM05D006502 ORTHO05D007704 2.0e-34 150.2 97 77.3
Nitab4.5_0000621g0090 Nicotiana tabacum HOM05D006502 ORTHO05D007704 1.1e-32 144.4 97 76.3
Nitab4.5_0000519g0410 Nicotiana tabacum HOM05D006502 ORTHO05D007704 4.2e-32 142.5 91 78.0
Nitab4.5_0003553g0080 Nicotiana tabacum HOM05D006502 ORTHO05D007704 2.7e-31 139.8 81 85.2
Nitab4.5_0002094g0080 Nicotiana tabacum HOM05D006502 ORTHO05D007704 2.5e-29 133.3 81 82.7
Nitab4.5_0010800g0030 Nicotiana tabacum HOM05D006502 ORTHO05D007704 9.6e-29 131.3 94 68.1
Nitab4.5_0011782g0020 Nicotiana tabacum HOM05D006502 ORTHO05D007704 6.2e-28 128.6 79 82.3
Nitab4.5_0001677g0010 Nicotiana tabacum HOM05D006502 ORTHO05D007704 1.4e-27 127.5 88 72.7
Nitab4.5_0007378g0040 Nicotiana tabacum HOM05D006502 ORTHO05D007704 9.0e-27 124.8 78 78.2
Nitab4.5_0000707g0090 Nicotiana tabacum HOM05D006502 ORTHO05D007704 4.9e-25 119.0 76 75.0
Nitab4.5_0008976g0060 Nicotiana tabacum HOM05D006502 ORTHO05D007704 1.0e-22 111.3 55 94.5
Nitab4.5_0000130g0100 Nicotiana tabacum HOM05D006502 ORTHO05D007704 3.9e-22 109.4 95 60.0
Nitab4.5_0004344g0020 Nicotiana tabacum HOM05D006502 ORTHO05D007704 2.4e-19 100.1 62 80.6
Nitab4.5_0007572g0080 Nicotiana tabacum HOM05D006502 ORTHO05D007704 9.0e-19 98.2 55 83.6
Nitab4.5_0000428g0510 Nicotiana tabacum HOM05D006502 ORTHO05D007704 3.4e-18 96.3 55 81.8
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 3.4e-18 96.3 61 75.4
Nitab4.5_0002468g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 1.0e-17 94.7 55 80.0
Nitab4.5_0002405g0020 Nicotiana tabacum HOM05D006502 ORTHO05D007704 3.2e-16 89.7 56 75.0
Peaxi162Scf00804g00008 Petunia axillaris HOM05D000173 ORTHO05D004400 1.2e-15 87.8 45 95.6
Solyc12g037980.2 Solanum lycopersicum HOM05D000173 ORTHO05D004400 3.5e-15 86.3 46 89.1
Sopen12g017690 Solanum pennellii HOM05D000173 ORTHO05D004400 3.5e-15 86.3 46 89.1
Nitab4.5_0000208g0190 Nicotiana tabacum HOM05D000173 ORTHO05D004400 6.0e-15 85.5 45 93.3
PGSC0003DMG400021766 Solanum tuberosum HOM05D000173 ORTHO05D004400 1.0e-14 84.7 46 87.0
Cc06_g15350 Coffea canephora HOM05D000173 ORTHO05D004400 1.5e-13 80.9 47 80.9
Nitab4.5_0002481g0030 Nicotiana tabacum HOM05D006502 ORTHO05D007704 1.5e-13 80.9 55 76.4
Lj9C429T7 Lonicera japonica HOM05D000173 ORTHO05D004400 1.1e-11 74.7 47 74.5
Oeu055898.1 Olea europaea HOM05D000173 ORTHO05D004400 1.1e-11 74.7 47 74.5
Nitab4.5_0001615g0090 Nicotiana tabacum HOM05D006502 ORTHO05D007704 2.4e-11 73.6 92 51.1
Cc04_g07400 Coffea canephora HOM05D000173 ORTHO05D004400 9.0e-11 71.6 47 72.3
Nitab4.5_0005539g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 9.0e-11 71.6 41 78.0
CSS0004352 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 2.0e-10 70.5 57 64.9
CSS0020862 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 2.0e-10 70.5 57 64.9
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 3.4e-10 69.7 57 63.2
vmacro22486 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 3.4e-10 69.7 57 63.2
MSTRG.9268 Avicennia marina HOM05D000173 ORTHO05D004400 4.5e-10 69.3 47 68.1
SalBow5G1673 Salvia bowleyana HOM05D000173 ORTHO05D004400 7.7e-10 68.6 47 68.1
MSTRG.4553 Avicennia marina HOM05D000173 ORTHO05D004400 1.0e-09 68.2 47 68.1
ECA236G4399 Erigeron canadensis HOM05D000173 ORTHO05D004400 1.3e-09 67.8 47 68.1
SGA_v2.0_scaffold62G21627 Striga asiatica HOM05D000173 ORTHO05D004400 1.3e-09 67.8 47 72.3
Migut.D01593 Erythranthe guttata HOM05D000173 ORTHO05D004400 2.9e-09 66.6 47 66.0
unitig_736.g22474 Utricularia gibba HOM05D000173 ORTHO05D004400 2.9e-09 66.6 45 73.3
DCAR_011346 Daucus carota HOM05D000173 ORTHO05D004400 5.0e-09 65.9 47 66.0
AUR62025879 Chenopodium quinoa HOM05D000173 ORTHO05D004400 1.4e-08 64.3 57 61.4
Hund24237 Selenicereus undatus HOM05D000173 ORTHO05D004400 1.4e-08 64.3 51 66.7
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 3.2e-08 63.2 57 57.9
PGR042G0409 Punica granatum HOM05D000173 ORTHO05D004400 4.2e-08 62.8 55 60.0
Glyma.03G107300 Glycine max HOM05D000173 ORTHO05D004400 5.5e-08 62.4 57 56.1
Sc04g0003650 Simmondsia chinensis HOM05D000173 ORTHO05D004400 5.5e-08 62.4 57 59.6
Rhsim12G0144100 Rhododendron simsii HOM05D000173 ORTHO05D004400 7.2e-08 62.0 68 51.5
Haze_04561 Corylus avellana HOM05D000173 ORTHO05D004400 9.4e-08 61.6 57 57.9
Glyma.07G118800 Glycine max HOM05D000173 ORTHO05D004400 9.4e-08 61.6 58 55.2
Nitab4.5_0000416g0020 Nicotiana tabacum HOM05D000452 ORTHO05D000647 1.2e-07 61.2 97 41.2
Dinv40423 Davidia involucrata HOM05D000173 ORTHO05D004400 2.1e-07 60.5 57 59.6
Oeu024320.1 Olea europaea HOM05D000173 ORTHO05D004400 2.1e-07 60.5 47 68.1
GSVIVG01008255001 Vitis vinifera HOM05D000173 ORTHO05D004400 2.1e-07 60.5 57 63.2
Atru.chr9.786 Acer truncatum HOM05D000173 ORTHO05D004400 2.7e-07 60.1 54 59.3
Actinidia35080 Actinidia chinensis HOM05D000173 ORTHO05D004400 3.6e-07 59.7 57 57.9
TAR365G0790 Trochodendron aralioides HOM05D000173 ORTHO05D004400 3.6e-07 59.7 57 57.9
PGR083G2056 Punica granatum HOM05D000173 ORTHO05D004400 6.1e-07 58.9 56 57.1
Nitab4.5_0010800g0020 Nicotiana tabacum HOM05D006502 ORTHO05D007704 7.9e-07 58.5 32 81.2
Eucgr.B00704 Eucalyptus grandis HOM05D000173 ORTHO05D004400 1.0e-06 58.2 57 56.1
Hma1.2p1_0340F.1_g129760 Hydrangea macrophylla HOM05D000173 ORTHO05D004400 1.0e-06 58.2 51 60.8
Lsat_1_v5_gn_8_109740 Lactuca sativa HOM05D000173 ORTHO05D004400 1.0e-06 58.2 47 61.7
FvH4_3g17390 Fragaria vesca HOM05D000173 ORTHO05D004400 1.4e-06 57.8 47 59.6
FAN11G2015 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.4e-06 57.8 47 59.6
FAN16G2607 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.4e-06 57.8 47 59.6
FAN21G3174 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.4e-06 57.8 47 59.6
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 1.4e-06 57.8 51 54.9
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 1.8e-06 57.4 47 59.6
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 1.8e-06 57.4 57 56.1
Sed0004858 Sechium edule HOM05D000173 ORTHO05D004400 1.8e-06 57.4 57 56.1
arahy.Tifrunner.gnm1.ann1.1T6SIZ Arachis hypogaea HOM05D000173 ORTHO05D004400 2.3e-06 57.0 51 54.9
arahy.Tifrunner.gnm1.ann1.SSG76K Arachis hypogaea HOM05D000173 ORTHO05D004400 2.3e-06 57.0 51 54.9
Nitab4.5_0000053g0210 Nicotiana tabacum HOM05D000323 ORTHO05D000201 3.9e-06 56.2 34 82.4
RcHm_v2.0_Chr5g0028921 Rosa chinensis HOM05D000173 ORTHO05D004400 3.9e-06 56.2 47 57.4
FAN25G2209 Fragaria x ananassa HOM05D000173 ORTHO05D004400 5.1e-06 55.8 47 57.4
Lalb_Chr12g0210411 Lupinus albus HOM05D000173 ORTHO05D004400 5.1e-06 55.8 47 57.4
ClCG06G014940 Citrullus lanatus HOM05D000173 ORTHO05D004400 6.7e-06 55.5 57 54.4
MD11G1273400 Malus domestica HOM05D000173 ORTHO05D004400 6.7e-06 55.5 56 53.6
QL10p023744 Quercus lobata HOM05D000173 ORTHO05D004400 6.7e-06 55.5 57 54.4


User provided reference genes

Program Settings