Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.9e-160 567.8 290 100.0
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 7.1e-127 457.6 270 86.7
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.2e-126 456.8 289 83.7
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.1e-123 446.0 271 86.3
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 1.8e-117 426.4 251 83.7
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 1.1e-116 423.7 251 83.3
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 5.1e-109 398.3 250 80.8
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 2.5e-103 379.4 300 67.7
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 3.1e-98 362.5 271 66.1
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 4.1e-98 362.1 266 67.3
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 7.7e-97 357.8 266 66.5
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 5.5e-95 351.7 252 67.1
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 1.0e-93 347.4 250 68.4
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 5.1e-93 345.1 270 63.3
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 2.8e-91 339.3 265 64.2
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 5.3e-90 335.1 266 60.2
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 5.9e-89 331.6 275 62.9
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 3.2e-87 325.9 252 61.9
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 5.5e-87 325.1 260 60.8
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 4.7e-86 322.0 254 64.2
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 1.0e-85 320.9 250 61.2
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 3.0e-85 319.3 266 59.0
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 6.7e-85 318.2 265 57.7
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 8.8e-85 317.8 252 61.5
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 4.4e-84 315.5 266 57.5
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 7.4e-84 314.7 252 59.9
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 7.4e-84 314.7 250 60.0
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 9.7e-84 314.3 252 58.7
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 1.3e-83 313.9 260 58.8
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.3e-83 313.9 253 58.9
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 3.7e-83 312.4 251 60.2
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 3.7e-83 312.4 252 60.3
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 8.2e-83 311.2 253 60.5
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 1.1e-82 310.8 287 56.1
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 1.4e-82 310.5 251 60.2
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.8e-82 310.1 251 58.2
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.8e-82 310.1 265 58.1
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 3.1e-82 309.3 280 55.7
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 4.1e-82 308.9 266 57.1
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 4.1e-82 308.9 246 60.6
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 9.1e-82 307.8 266 57.1
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 4.5e-81 305.4 252 57.5
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 1.0e-80 304.3 252 58.7
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 1.3e-80 303.9 252 57.9
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 2.2e-80 303.1 251 57.4
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 3.8e-80 302.4 293 53.2
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 5.0e-80 302.0 250 58.4
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 5.0e-80 302.0 250 58.0
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 1.1e-79 300.8 252 57.5
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 1.1e-79 300.8 252 58.3
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 1.1e-79 300.8 252 57.5
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 1.9e-79 300.1 257 56.8
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 2.5e-79 299.7 252 57.1
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 1.2e-78 297.4 251 57.0
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 1.8e-77 293.5 271 55.0
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 5.2e-77 292.0 252 56.0
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 6.7e-77 291.6 258 55.4
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 6.7e-77 291.6 264 53.4
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 1.2e-76 290.8 269 54.3
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 4.4e-76 288.9 252 55.2
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 2.8e-75 286.2 252 56.3
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 8.2e-75 284.6 252 55.2
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.1e-74 284.3 251 55.4
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 2.4e-74 283.1 251 55.0
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 3.1e-74 282.7 300 49.0
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 4.1e-74 282.3 249 63.1
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 7.0e-74 281.6 388 42.0
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 3.5e-73 279.3 233 58.8
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.0e-72 277.7 250 54.8
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 2.9e-72 276.2 250 54.4
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 5.0e-72 275.4 227 55.5
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 8.5e-72 274.6 247 54.7
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 2.5e-71 273.1 231 57.6
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 7.2e-71 271.6 233 57.5
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 7.2e-71 271.6 260 53.5
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 1.0e-69 267.7 226 57.5
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 1.4e-69 267.3 262 50.0
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 3.0e-69 266.2 253 53.0
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 4.0e-69 265.8 252 52.8
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 5.2e-69 265.4 262 50.8
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.5e-68 263.8 252 51.6
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 5.7e-68 261.9 252 48.4
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 2.2e-67 260.0 252 50.8
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 2.8e-67 259.6 252 48.0
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 2.8e-67 259.6 252 48.0
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 8.3e-67 258.1 265 49.1
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.4e-66 256.5 244 51.6
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 3.1e-66 256.1 258 48.8
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 4.1e-66 255.8 258 48.8
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 9.1e-66 254.6 258 49.2
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 9.1e-66 254.6 254 50.0
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 1.6e-65 253.8 266 48.1
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 3.5e-65 252.7 251 49.0
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 7.7e-65 251.5 251 49.0
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.7e-64 250.4 271 47.6
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 1.7e-64 250.4 251 49.0
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 2.9e-64 249.6 252 49.6
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 3.8e-64 249.2 254 51.2
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.8e-64 249.2 254 51.2
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 6.5e-64 248.4 181 64.6
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.5e-63 247.3 282 45.4
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 2.5e-63 246.5 253 49.0
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.5e-63 246.5 254 50.8
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.8e-62 243.0 280 44.3
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.6e-62 242.7 254 49.6
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 8.0e-62 241.5 254 49.6
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 8.8e-61 238.0 182 70.9
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 9.8e-60 234.6 252 48.0
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 2.2e-59 233.4 251 43.8
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.6e-57 227.3 255 46.3
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 2.7e-57 226.5 185 61.6
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.7e-57 226.5 124 88.7
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 2.9e-56 223.0 208 53.8
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 5.0e-56 222.2 156 79.5
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 3.3e-55 219.5 174 62.1
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 3.6e-54 216.1 254 44.5
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 2.3e-53 213.4 187 54.0
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 4.0e-53 212.6 179 55.9
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 2.0e-52 210.3 260 43.5
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 5.0e-48 195.7 209 48.3
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 5.0e-48 195.7 257 44.0
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.6e-46 189.5 152 61.8
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 1.8e-45 187.2 178 59.0
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 1.3e-43 181.0 137 65.0
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.2e-43 180.3 198 48.0
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.1e-42 177.9 138 62.3
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.4e-42 177.6 183 50.8
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 1.1e-39 167.9 103 73.8
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.9e-39 167.2 126 61.9
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.8e-37 160.6 254 37.8
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 9.8e-36 154.8 181 47.0
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.3e-35 154.5 149 50.3
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 2.4e-34 150.2 327 30.9
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.2e-28 131.3 217 37.8
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.2e-28 131.3 176 42.0
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 1.1e-26 124.8 268 31.3
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 7.1e-26 122.1 249 30.5
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 2.1e-25 120.6 213 34.7
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.9e-23 114.0 167 38.9
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 3.6e-22 109.8 82 62.2
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 8.1e-22 108.6 264 27.3
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 4.9e-19 99.4 86 57.0
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 4.2e-18 96.3 237 29.1
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 1.6e-17 94.4 141 39.7
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 5.1e-16 89.4 71 63.4
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 2.5e-15 87.0 145 36.6
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 7.3e-15 85.5 141 36.9
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 6.2e-14 82.4 73 60.3
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 6.2e-14 82.4 141 32.6
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 2.0e-12 77.4 197 28.4
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.6e-12 77.0 59 64.4
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 3.4e-12 76.6 150 30.0
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 7.6e-12 75.5 87 42.5
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 2.2e-11 73.9 68 52.9
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 1.9e-10 70.9 61 54.1
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 1.8e-08 64.3 40 72.5
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 3.7e-06 56.6 72 40.3
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 4.8e-06 56.2 78 35.9
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 6.2e-06 55.8 57 52.6


User provided reference genes

Program Settings