Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001961g0050 Nicotiana tabacum HOM05D006238 ORTHO05D007458 2.5e-136 489.2 333 100.0
Nitab4.5_0005160g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 1.1e-83 314.3 338 73.4
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 2.7e-45 186.8 299 42.1
Sopen12g019730 Solanum pennellii HOM05D006238 ORTHO05D007458 1.5e-43 181.0 299 54.5
Nitab4.5_0004284g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 4.3e-43 179.5 293 59.0
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 4.9e-39 166.0 299 46.5
Solyc12g040320.2 Solanum lycopersicum HOM05D006238 ORTHO05D007458 8.4e-39 165.2 299 55.5
SGA_v2.0_scaffold28G11764 Striga asiatica HOM05D006238 ORTHO05D007458 1.1e-38 164.9 290 56.2
Lj1g0017158 Lotus japonicus HOM05D006238 ORTHO05D007458 2.4e-38 163.7 299 55.9
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 4.2e-38 162.9 298 54.4
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 4.2e-38 162.9 299 47.2
Glyma.06G201600 Glycine max HOM05D006238 ORTHO05D007458 4.2e-38 162.9 299 48.2
Ca_13804_v3 Cicer arietinum L. HOM05D006238 ORTHO05D007458 2.7e-37 160.2 299 47.8
Lalb_Chr08g0238951 Lupinus albus HOM05D006238 ORTHO05D007458 1.0e-36 158.3 299 54.8
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 1.3e-36 157.9 299 45.8
Peaxi162Scf00106g00109 Petunia axillaris HOM05D006238 ORTHO05D007458 8.7e-36 155.2 315 52.1
Potri.015G048800 Populus trichocarpa HOM05D006238 ORTHO05D007458 1.3e-34 151.4 299 54.2
Migut.I00441 Erythranthe guttata HOM05D006238 ORTHO05D007458 2.8e-34 150.2 299 55.2
CSS0008812 Camellia sinensis var. sinensis HOM05D006238 ORTHO05D007458 3.6e-34 149.8 299 54.2
Aa31LG3G18600 Aethionema arabicum HOM05D006238 ORTHO05D007458 3.1e-33 146.7 319 50.2
Migut.L00004 Erythranthe guttata HOM05D006238 ORTHO05D007458 4.0e-33 146.4 299 54.5
SalBow5G1318 Salvia bowleyana HOM05D006238 ORTHO05D007458 4.0e-33 146.4 327 48.0
Oeu038367.1 Olea europaea HOM05D006238 ORTHO05D007458 6.9e-33 145.6 299 54.2
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 1.2e-32 144.8 299 53.5
arahy.Tifrunner.gnm1.ann1.G7J9WL Arachis hypogaea HOM05D006238 ORTHO05D007458 1.5e-32 144.4 298 53.4
Thecc.03G097700 Theobroma cacao HOM05D006238 ORTHO05D007458 1.5e-32 144.4 299 53.8
Actinidia35026 Actinidia chinensis HOM05D006238 ORTHO05D007458 4.4e-32 142.9 299 53.5
Gohir.A09G243100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 5.8e-32 142.5 299 53.5
Gohir.D09G243800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 5.8e-32 142.5 299 53.5
Gorai.006G267600 Gossypium raimondii HOM05D006238 ORTHO05D007458 5.8e-32 142.5 299 53.5
PGR044G1626 Punica granatum HOM05D006238 ORTHO05D007458 7.6e-32 142.1 299 50.2
TWI81G0503 Tripterygium wilfordii HOM05D006238 ORTHO05D007458 9.9e-32 141.7 299 53.2
Nitab4.5_0001410g0100 Nicotiana tabacum HOM05D006238 ORTHO05D007458 1.3e-31 141.4 297 53.2
MSTRG.22972 Avicennia marina HOM05D006238 ORTHO05D007458 4.9e-31 139.4 299 53.5
Sopen03g034410 Solanum pennellii HOM05D006238 ORTHO05D007458 8.4e-31 138.7 299 55.5
Ciclev10021749m.g Citrus clementina HOM05D006238 ORTHO05D007458 1.9e-30 137.5 298 49.3
Sed0022301 Sechium edule HOM05D006238 ORTHO05D007458 2.4e-30 137.1 299 50.2
Eucgr.K02503 Eucalyptus grandis HOM05D006238 ORTHO05D007458 3.2e-30 136.7 299 49.2
Prupe.5G201600 Prunus persica HOM05D006238 ORTHO05D007458 3.2e-30 136.7 298 50.7
RcHm_v2.0_Chr7g0182671 Rosa chinensis HOM05D006238 ORTHO05D007458 3.2e-30 136.7 298 49.3
Hund02602 Selenicereus undatus HOM05D006238 ORTHO05D007458 4.2e-30 136.3 310 46.5
GSVIVG01007912001 Vitis vinifera HOM05D006238 ORTHO05D007458 4.2e-30 136.3 298 52.7
CAN.G479.27 Capsicum annuum HOM05D006238 ORTHO05D007458 5.4e-30 136.0 299 51.8
Solyc03g115410.3 Solanum lycopersicum HOM05D006238 ORTHO05D007458 5.4e-30 136.0 299 54.8
Cfa019307 Carpinus fangiana HOM05D006238 ORTHO05D007458 7.1e-30 135.6 299 52.2
CiPaw.11G050500 Carya illinoinensis HOM05D006238 ORTHO05D007458 7.1e-30 135.6 299 52.2
Haze_07689 Corylus avellana HOM05D006238 ORTHO05D007458 7.1e-30 135.6 299 52.2
QL93p0191_0017 Quercus lobata HOM05D006238 ORTHO05D007458 7.1e-30 135.6 299 49.8
FvH4_5g14250 Fragaria vesca HOM05D006238 ORTHO05D007458 9.3e-30 135.2 298 49.3
Atru.chr9.382 Acer truncatum HOM05D006238 ORTHO05D007458 1.2e-29 134.8 300 49.3
CANSAT80G2720 Cannabis sativa HOM05D006238 ORTHO05D007458 1.2e-29 134.8 299 48.8
Lsat_1_v5_gn_4_110280 Lactuca sativa HOM05D006238 ORTHO05D007458 1.6e-29 134.4 299 49.8
QL10p018767 Quercus lobata HOM05D006238 ORTHO05D007458 1.6e-29 134.4 299 49.5
Psat5g211960 Pisum sativum HOM05D006238 ORTHO05D007458 3.5e-29 133.3 299 48.5
COL.COLO4_22216 Corchorus olitorius HOM05D006238 ORTHO05D007458 2.3e-28 130.6 299 52.5
MD14G1209200 Malus domestica HOM05D006238 ORTHO05D007458 5.1e-28 129.4 299 49.5
BraA02t04934Z Brassica rapa HOM05D006238 ORTHO05D007458 6.6e-28 129.0 300 51.0
Gohir.A12G181100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.1e-27 128.3 299 51.5
Aqoxy3G00445 Aquilegia oxysepala HOM05D006238 ORTHO05D007458 1.5e-27 127.9 299 50.5
MELO3C017212.2 Cucumis melo HOM05D006238 ORTHO05D007458 1.5e-27 127.9 299 48.5
CsaV3_1G002770 Cucumis sativus L. HOM05D006238 ORTHO05D007458 1.5e-27 127.9 299 48.5
EL10Ac5g11104 Beta vulgaris HOM05D006238 ORTHO05D007458 1.9e-27 127.5 300 46.7
BcaNung04721 Brassica carinata HOM05D006238 ORTHO05D007458 1.9e-27 127.5 300 50.7
C02p03310 Brassica napus HOM05D006238 ORTHO05D007458 1.9e-27 127.5 300 50.7
BolC2t06295H Brassica oleracea HOM05D006238 ORTHO05D007458 1.9e-27 127.5 300 50.7
THA.LOC104801299 Tarenaya hassleriana HOM05D006238 ORTHO05D007458 1.9e-27 127.5 299 51.2
ECA232G0231 Erigeron canadensis HOM05D000954 ORTHO05D000822 3.3e-27 126.7 300 49.0
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 3.3e-27 126.7 299 51.2
PGSC0003DMG401024548 Solanum tuberosum HOM05D006238 ORTHO05D007458 3.3e-27 126.7 302 54.3
BcaB05g21597 Brassica carinata HOM05D006238 ORTHO05D007458 4.3e-27 126.3 299 50.8
HanXRQChr02g0042551 Helianthus annuus HOM05D006238 ORTHO05D007458 7.3e-27 125.6 299 48.5
ECA247G0665 Erigeron canadensis HOM05D000006 ORTHO05D007458 1.3e-26 124.8 295 47.5
Sp6g35050 Schrenkiella parvula HOM05D006238 ORTHO05D007458 1.6e-26 124.4 299 50.5
Thhalv10014418m.g Eutrema salsugineum HOM05D006238 ORTHO05D007458 3.6e-26 123.2 299 50.2
PSO478G4259 Papaver somniferum HOM05D006238 ORTHO05D007458 6.2e-26 122.5 298 46.3
PSO017G1619 Papaver somniferum HOM05D006238 ORTHO05D007458 8.1e-26 122.1 298 46.3
Lsat_1_v5_gn_1_13640 Lactuca sativa HOM05D006238 ORTHO05D007458 1.1e-25 121.7 290 47.9
Carub.0006s0680 Capsella rubella HOM05D006238 ORTHO05D007458 1.4e-25 121.3 299 50.2
AL6G18240 Arabidopsis lyrata HOM05D006238 ORTHO05D007458 2.4e-25 120.6 299 50.2
ClCG06G015770 Citrullus lanatus HOM05D006238 ORTHO05D007458 2.4e-25 120.6 299 47.2
BcaNung04724 Brassica carinata HOM05D006238 ORTHO05D007458 5.3e-25 119.4 299 50.2
CARHR205290 Cardamine hirsuta HOM05D006238 ORTHO05D007458 6.9e-25 119.0 299 49.8
HanXRQChr14g0439161 Helianthus annuus HOM05D006238 ORTHO05D007458 6.9e-25 119.0 299 48.5
ATR0064G078 Amborella trichopoda HOM05D006238 ORTHO05D007458 1.5e-24 117.9 299 49.2
AT5G07910 Arabidopsis thaliana HOM05D006238 ORTHO05D007458 1.5e-24 117.9 299 49.5
PGSC0003DMG400005395 Solanum tuberosum HOM05D006238 ORTHO05D007458 2.0e-24 117.5 63 92.1
MD06G1200000 Malus domestica HOM05D006238 ORTHO05D007458 3.4e-24 116.7 306 44.4
A03p03520 Brassica napus HOM05D006238 ORTHO05D007458 4.5e-24 116.3 299 46.2
BraA03t09702Z Brassica rapa HOM05D006238 ORTHO05D007458 4.5e-24 116.3 299 46.2
BcaB01g05688 Brassica carinata HOM05D006238 ORTHO05D007458 9.9e-24 115.2 299 48.8
Phvul.009G193701 Phaseolus vulgaris HOM05D006238 ORTHO05D007458 1.3e-23 114.8 66 83.3
BcaB01g05644 Brassica carinata HOM05D006238 ORTHO05D007458 2.2e-23 114.0 299 48.8
C03p03970 Brassica napus HOM05D006238 ORTHO05D007458 2.2e-23 114.0 299 48.8
BolC3t12934H Brassica oleracea HOM05D006238 ORTHO05D007458 2.2e-23 114.0 299 48.8
BcaB01g05687 Brassica carinata HOM05D006238 ORTHO05D007458 2.9e-23 113.6 299 48.5
Dinv38791 Davidia involucrata HOM05D006238 ORTHO05D007458 3.8e-23 113.2 62 87.1
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 3.8e-23 113.2 294 45.6
Cpa.g.sc94.12 Carica papaya HOM05D006238 ORTHO05D007458 6.4e-23 112.5 68 76.5
Cc04_g15060 Coffea canephora HOM05D006238 ORTHO05D007458 6.4e-23 112.5 62 85.5
DCAR_016594 Daucus carota HOM05D006238 ORTHO05D007458 8.4e-23 112.1 266 50.0
Manes.06G087000 Manihot esculenta HOM05D006238 ORTHO05D007458 1.9e-22 110.9 62 83.9
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 2.4e-22 110.5 68 76.5
FAN13G1324 Fragaria x ananassa HOM05D000113 ORTHO05D002571 4.2e-22 109.8 296 45.6
Gorai.008G197100 Gossypium raimondii HOM05D006238 ORTHO05D007458 1.0e-20 105.1 62 77.4
AUR62008501 Chenopodium quinoa HOM05D006238 ORTHO05D007458 1.3e-20 104.8 78 66.7
AUR62021591 Chenopodium quinoa HOM05D006238 ORTHO05D007458 1.8e-20 104.4 93 61.3
PSO339G0502 Papaver somniferum HOM05D006238 ORTHO05D007458 2.3e-20 104.0 62 77.4
PSO384G2798 Papaver somniferum HOM05D006238 ORTHO05D007458 2.3e-20 104.0 62 77.4
Oeu062485.1 Olea europaea HOM05D006238 ORTHO05D007458 3.3e-19 100.1 76 69.7
Cpa.g.sc94.13 Carica papaya HOM05D006238 ORTHO05D007458 7.4e-19 99.0 75 69.3
Peaxi162Scf00201g00133 Petunia axillaris HOM05D006238 ORTHO05D007458 2.8e-18 97.1 64 81.2
Sc10g0009770 Simmondsia chinensis HOM05D006238 ORTHO05D007458 3.7e-18 96.7 73 68.5
HPP92_027112 Vanilla planifolia HOM05D006238 ORTHO05D007458 6.2e-18 95.9 65 67.7
HPP92_013436 Vanilla planifolia HOM05D001674 ORTHO05D008374 1.4e-17 94.7 299 42.8
Sabra15G0078500 Salix brachista HOM05D006238 ORTHO05D007458 1.8e-17 94.4 97 52.6
Rhsim12G0152200 Rhododendron simsii HOM05D006238 ORTHO05D007458 3.1e-17 93.6 139 43.9
AagrBONN_evm.TU.Sc2ySwM_228.2402 Anthoceros agrestis HOM05D006238 ORTHO05D007458 2.6e-16 90.5 64 62.5
Hund26925 Selenicereus undatus HOM05D006238 ORTHO05D007458 1.3e-15 88.2 65 64.6
Zm00001eb008470 Zea mays HOM05D006238 ORTHO05D007458 1.9e-14 84.3 306 37.3
Pp3c19_5770 Physcomitrium patens HOM05D006238 ORTHO05D007458 3.5e-13 80.1 300 44.0
CDE10G0764 Ceratophyllum demersum HOM05D000773 ORTHO05D000588 4.6e-13 79.7 86 51.2
Os03g0212200 Oryza sativa ssp. japonica HOM05D006238 ORTHO05D007458 7.9e-13 79.0 75 52.0
Dinv10691 Davidia involucrata HOM05D000773 ORTHO05D000588 3.0e-12 77.0 245 50.6
vmacro16511 Vaccinium macrocarpon HOM05D006238 ORTHO05D007458 3.0e-12 77.0 159 36.5
SMO364G0258 Selaginella moellendorffii HOM05D006238 ORTHO05D007458 1.5e-11 74.7 298 35.6
CBR_g18689 Chara braunii HOM05D006238 ORTHO05D007458 3.7e-10 70.1 59 50.8
QL10p018168 Quercus lobata HOM05D006238 ORTHO05D007458 8.2e-10 68.9 55 58.2
Cre12.g503600 Chlamydomonas reinhardtii HOM05D006238 ORTHO05D007458 2.4e-09 67.4 63 49.2
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 2.4e-09 67.4 67 43.3
Lj5A105G57 Lonicera japonica HOM05D006238 ORTHO05D007458 6.9e-09 65.9 52 63.5
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 2.6e-08 63.9 71 43.7
PRCOL_00001761 Prasinoderma coloniale HOM05D006238 ORTHO05D007458 4.5e-08 63.2 353 22.4
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 7.6e-08 62.4 65 41.5
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 2.9e-07 60.5 67 38.8
QL93p0869_0056 Quercus lobata HOM05D000176 ORTHO05D000106 2.5e-06 57.4 31 87.1
QL09p008289 Quercus lobata HOM05D001043 ORTHO05D000106 5.5e-06 56.2 31 87.1


User provided reference genes

Program Settings