Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001952g0270 Nicotiana tabacum HOM05D007797 ORTHO05D009741 7.5e-62 240.4 122 100.0
Nitab4.5_0000031g0180 Nicotiana tabacum HOM05D008466 ORTHO05D011423 1.3e-50 203.0 119 88.2
Nitab4.5_0002325g0090 Nicotiana tabacum HOM05D008466 ORTHO05D010817 8.0e-48 193.7 115 86.1
Nitab4.5_0008578g0050 Nicotiana tabacum HOM05D008466 ORTHO05D011423 1.1e-41 173.3 119 77.3
Nitab4.5_0000172g1860 Nicotiana tabacum HOM05D007797 ORTHO05D009741 1.5e-38 162.9 99 87.9
CAN.G1045.3 Capsicum annuum HOM05D007797 ORTHO05D009741 1.3e-37 159.8 86 95.3
PGSC0003DMG402008334 Solanum tuberosum HOM05D007797 ORTHO05D009741 4.9e-37 157.9 86 94.2
Cc00_g01610 Coffea canephora HOM05D007797 ORTHO05D009741 1.2e-35 153.3 86 91.9
Peaxi162Scf00216g00118 Petunia axillaris HOM05D007797 ORTHO05D009741 1.2e-35 153.3 86 91.9
CAN.G547.14 Capsicum annuum HOM05D007797 ORTHO05D009741 1.7e-34 149.4 86 90.7
CANSAT16G0024 Cannabis sativa HOM05D007797 ORTHO05D009741 3.0e-34 148.7 86 89.5
CsaV3_UNG208730 Cucumis sativus L. HOM05D007797 ORTHO05D009741 8.6e-34 147.1 86 87.2
Nn1g09938 Nelumbo nucifera HOM05D007797 ORTHO05D009741 2.5e-33 145.6 86 88.4
Nn1g09983 Nelumbo nucifera HOM05D007797 ORTHO05D009741 2.5e-33 145.6 86 88.4
Nn1g10175 Nelumbo nucifera HOM05D007797 ORTHO05D009741 2.5e-33 145.6 86 88.4
CAN.G14.28 Capsicum annuum HOM05D007797 ORTHO05D009741 1.2e-32 143.3 86 87.2
Hma1.2p1_0038F.1_g024100 Hydrangea macrophylla HOM05D007797 ORTHO05D009741 1.6e-32 142.9 86 87.2
SHI26648 Sapria himalayana HOM05D007797 ORTHO05D009741 8.1e-32 140.6 83 86.7
Gorai.001G167600 Gossypium raimondii HOM05D007797 ORTHO05D009741 5.8e-30 134.4 85 84.7
Rhsim08G0173100 Rhododendron simsii HOM05D002913 ORTHO05D003323 1.1e-28 130.2 86 74.4
Gohir.D08G087700 Gossypium hirsutum HOM05D007797 ORTHO05D009741 5.4e-28 127.9 85 81.2
Potri.001G285100 Populus trichocarpa HOM05D007797 ORTHO05D009741 3.0e-26 122.1 87 72.4
PGR102G1585 Punica granatum HOM05D007797 ORTHO05D009741 1.4e-23 113.2 85 63.5
Sabra15G0102600 Salix brachista HOM05D007797 ORTHO05D009741 9.0e-23 110.5 86 68.6
Lalb_Chr01g0005641 Lupinus albus HOM05D007797 ORTHO05D009741 2.0e-22 109.4 82 65.9
Potri.015G078000 Populus trichocarpa HOM05D007797 ORTHO05D009741 2.6e-22 109.0 86 67.4
PGR044G2108 Punica granatum HOM05D007797 ORTHO05D009741 2.6e-22 109.0 86 61.6
Gohir.D10G141100 Gossypium hirsutum HOM05D007797 ORTHO05D009741 3.4e-22 108.6 83 68.7
Gorai.011G157000 Gossypium raimondii HOM05D007797 ORTHO05D009741 3.4e-22 108.6 83 68.7
Nitab4.5_0000925g0080 Nicotiana tabacum HOM05D008923 ORTHO05D011423 3.4e-22 108.6 75 77.3
Hund02811 Selenicereus undatus HOM05D007797 ORTHO05D009741 3.4e-22 108.6 85 62.4
Gohir.A10G125300 Gossypium hirsutum HOM05D007797 ORTHO05D009741 4.4e-22 108.2 83 67.5
Lalb_Chr19g0135861 Lupinus albus HOM05D007797 ORTHO05D009741 4.4e-22 108.2 83 63.9
Cc02_g04270 Coffea canephora HOM05D007797 ORTHO05D009741 5.8e-22 107.8 85 63.5
Hma1.2p1_0038F.1_g024110 Hydrangea macrophylla HOM05D007797 ORTHO05D009741 9.9e-22 107.1 66 83.3
MD11G1291100 Malus domestica HOM05D007797 ORTHO05D009741 2.2e-21 105.9 83 65.1
Glyma.12G099000 Glycine max HOM05D007797 ORTHO05D009741 2.9e-21 105.5 81 63.0
Glyma.06G305600 Glycine max HOM05D007797 ORTHO05D009741 3.8e-21 105.1 81 63.0
Ca_26932_v3 Cicer arietinum L. HOM05D007797 ORTHO05D009741 8.4e-21 104.0 81 61.7
SGA_v2.0_scaffold104G30278 Striga asiatica HOM05D007797 ORTHO05D009741 8.4e-21 104.0 85 62.4
TPR.G4600 Trifolium pratense HOM05D007797 ORTHO05D009741 8.4e-21 104.0 81 61.7
Gohir.A05G087550 Gossypium hirsutum HOM05D007797 ORTHO05D009741 1.1e-20 103.6 83 67.5
SGA_v2.0_scaffold36G14284 Striga asiatica HOM05D007797 ORTHO05D009741 1.1e-20 103.6 85 62.4
VMungo1127G0257 Vigna mungo HOM05D007797 ORTHO05D009741 1.4e-20 103.2 81 60.5
Gohir.D05G088550 Gossypium hirsutum HOM05D007797 ORTHO05D009741 1.9e-20 102.8 83 66.3
TWI39G0893 Tripterygium wilfordii HOM05D007797 ORTHO05D009741 3.2e-20 102.1 86 64.0
Phvul.008G036400 Phaseolus vulgaris HOM05D007797 ORTHO05D009741 4.2e-20 101.7 81 60.5
Ah.01g002110 Amaranthus hybridus HOM05D007797 ORTHO05D009741 5.4e-20 101.3 85 58.8
Medtr4g048070 Medicago truncatula HOM05D007797 ORTHO05D009741 5.4e-20 101.3 81 60.5
Psat7g157320 Pisum sativum HOM05D007797 ORTHO05D009741 5.4e-20 101.3 81 60.5
RcHm_v2.0_Chr6g0275631 Rosa chinensis HOM05D007797 ORTHO05D009741 1.2e-19 100.1 85 54.1
FAN27G1170 Fragaria x ananassa HOM05D007797 ORTHO05D009741 1.6e-19 99.8 85 55.3
FvH4_2g13880 Fragaria vesca HOM05D007797 ORTHO05D009741 2.1e-19 99.4 85 55.3
Ah.01g013130 Amaranthus hybridus HOM05D007797 ORTHO05D009741 2.7e-19 99.0 97 53.6
FAN15G0457 Fragaria x ananassa HOM05D007797 ORTHO05D009741 3.5e-19 98.6 85 55.3
Phvul.011G103900 Phaseolus vulgaris HOM05D007797 ORTHO05D009741 6.0e-19 97.8 81 58.0
CANSAT54G1603 Cannabis sativa HOM05D007797 ORTHO05D009741 1.0e-18 97.1 85 62.4
arahy.Tifrunner.gnm1.ann1.BQ3MLV Arachis hypogaea HOM05D007797 ORTHO05D009741 2.3e-18 95.9 83 56.6
arahy.Tifrunner.gnm1.ann1.WH4ZAG Arachis hypogaea HOM05D007797 ORTHO05D009741 2.3e-18 95.9 83 56.6
vmacro08745 Vaccinium macrocarpon HOM05D002681 ORTHO05D009741 1.1e-17 93.6 113 52.2
AUR62012872 Chenopodium quinoa HOM05D007797 ORTHO05D009741 1.9e-17 92.8 85 56.5
AUR62017640 Chenopodium quinoa HOM05D007797 ORTHO05D009741 1.9e-17 92.8 85 56.5
Nitab4.5_0001796g0310 Nicotiana tabacum HOM05D008923 ORTHO05D011423 2.5e-17 92.4 119 48.7
PSO384G3399 Papaver somniferum HOM05D007797 ORTHO05D009741 4.3e-17 91.7 85 54.1
PSO135G0291 Papaver somniferum HOM05D007797 ORTHO05D009741 9.6e-17 90.5 85 52.9
COL.COLO4_35798 Corchorus olitorius HOM05D007797 ORTHO05D009741 1.3e-16 90.1 83 56.6
EL10Ac9g22883 Beta vulgaris HOM05D007797 ORTHO05D009741 2.8e-16 89.0 103 49.5
THA.LOC104799736 Tarenaya hassleriana HOM05D007797 ORTHO05D009741 7.6e-14 80.9 83 47.0
Aqoxy4G02474 Aquilegia oxysepala HOM05D007797 ORTHO05D009741 1.3e-13 80.1 82 50.0
SalBow7G2468 Salvia bowleyana HOM05D000878 ORTHO05D001408 2.2e-13 79.3 84 52.4
Carub.0006s0813 Capsella rubella HOM05D007797 ORTHO05D009741 2.9e-13 79.0 78 50.0
Aa31LG3G17450 Aethionema arabicum HOM05D007797 ORTHO05D009741 3.8e-13 78.6 78 48.7
Thhalv10016099m.g Eutrema salsugineum HOM05D007797 ORTHO05D009741 3.8e-13 78.6 78 50.0
Sp6g33770 Schrenkiella parvula HOM05D007797 ORTHO05D009741 3.8e-13 78.6 78 50.0
Carub.0003s2765 Capsella rubella HOM05D007797 ORTHO05D009741 8.4e-13 77.4 78 48.7
CARHR203780 Cardamine hirsuta HOM05D007797 ORTHO05D009741 8.4e-13 77.4 78 48.7
Nitab4.5_0000580g0170 Nicotiana tabacum HOM05D007797 ORTHO05D009741 1.9e-12 76.3 52 80.8
AL6G20010 Arabidopsis lyrata HOM05D007797 ORTHO05D009741 3.2e-12 75.5 78 47.4
AT4G32210 Arabidopsis thaliana HOM05D007797 ORTHO05D009741 3.2e-12 75.5 78 47.4
AT5G09600 Arabidopsis thaliana HOM05D007797 ORTHO05D009741 3.2e-12 75.5 78 47.4
BcaB05g21543 Brassica carinata HOM05D007797 ORTHO05D009741 1.2e-11 73.6 78 47.4
BolC9t59546H Brassica oleracea HOM05D007797 ORTHO05D009741 1.3e-10 70.1 78 47.4
A10p27750 Brassica napus HOM05D007797 ORTHO05D009741 1.8e-10 69.7 78 46.2
C09p67860 Brassica napus HOM05D007797 ORTHO05D009741 1.8e-10 69.7 78 46.2
BraA10t44826Z Brassica rapa HOM05D007797 ORTHO05D009741 1.8e-10 69.7 78 46.2
CAN.G7.25 Capsicum annuum HOM05D008466 ORTHO05D009741 9.6e-09 63.9 41 80.5
Nitab4.5_0000172g2090 Nicotiana tabacum HOM05D008466 ORTHO05D011423 8.1e-08 60.8 33 81.8
SEGI_33407 Sequoiadendron giganteum HOM05D007797 ORTHO05D009741 8.1e-08 60.8 47 68.1
BcaB08g37196 Brassica carinata HOM05D007797 ORTHO05D009741 1.4e-07 60.1 67 46.3


User provided reference genes

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