Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001952g0220 Nicotiana tabacum HOM05D003535 ORTHO05D003986 1.7e-146 522.7 281 100.0
Nitab4.5_0007185g0090 Nicotiana tabacum HOM05D003535 ORTHO05D003986 2.4e-124 449.1 276 89.9
Sopen02g031960 Solanum pennellii HOM05D003535 ORTHO05D003986 1.9e-92 343.2 276 71.7
CAN.G206.59 Capsicum annuum HOM05D003535 ORTHO05D003986 3.6e-83 312.4 276 67.8
Solyc02g087220.4 Solanum lycopersicum HOM05D003535 ORTHO05D003986 2.8e-51 206.5 166 72.3
Peaxi162Scf00129g00822 Petunia axillaris HOM05D003535 ORTHO05D003986 8.3e-48 194.9 195 60.5
Dinv33673 Davidia involucrata HOM05D003535 ORTHO05D003986 1.6e-46 190.7 278 47.5
CSS0038696 Camellia sinensis var. sinensis HOM05D003535 ORTHO05D003986 6.2e-35 152.1 276 42.4
CAN.G714.13 Capsicum annuum HOM05D003535 ORTHO05D003986 1.4e-31 141.0 144 61.1
Lju41A30T60 Lonicera japonica HOM05D003535 ORTHO05D003986 1.9e-31 140.6 285 41.1
Cc07_g02620 Coffea canephora HOM05D003535 ORTHO05D003986 2.7e-30 136.7 281 42.3
Hma1.2p1_1975F.1_g309720 Hydrangea macrophylla HOM05D003535 ORTHO05D003986 3.5e-30 136.3 278 38.1
TAR629G0129 Trochodendron aralioides HOM05D003535 ORTHO05D003986 4.7e-27 125.9 297 37.0
GSVIVG01032539001 Vitis vinifera HOM05D003535 ORTHO05D003986 2.4e-26 123.6 288 34.4
MSTRG.23982 Avicennia marina HOM05D003535 ORTHO05D003986 1.5e-25 120.9 279 38.4
Migut.H00157 Erythranthe guttata HOM05D013849 ORTHO05D003986 2.2e-24 117.1 281 41.3
Nn3g17007 Nelumbo nucifera HOM05D003535 ORTHO05D003986 2.2e-24 117.1 293 35.5
Sed0009689 Sechium edule HOM05D003535 ORTHO05D003986 1.1e-23 114.8 293 36.2
GSVIVG01007821001 Vitis vinifera HOM05D003535 ORTHO05D003986 4.6e-22 109.4 288 31.9
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 3.9e-21 106.3 290 36.2
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 3.9e-21 106.3 290 36.2
CsaV3_5G037470 Cucumis sativus L. HOM05D003535 ORTHO05D003986 1.3e-19 101.3 298 33.9
MBI14_g12776_MAGBIO Magnolia biondii HOM05D003535 ORTHO05D003986 2.1e-19 100.5 293 34.5
PSO478G4390 Papaver somniferum HOM05D003535 ORTHO05D003986 2.8e-19 100.1 292 34.6
Prupe.3G278600 Prunus persica HOM05D003535 ORTHO05D003986 4.8e-19 99.4 296 33.8
QL02p078163 Quercus lobata HOM05D003535 ORTHO05D003986 8.1e-19 98.6 279 34.1
QL93p0205_0149 Quercus lobata HOM05D003535 ORTHO05D003986 8.1e-19 98.6 279 34.1
MELO3C021511.2 Cucumis melo HOM05D003535 ORTHO05D003986 1.8e-18 97.4 305 33.8
Nn4g22912 Nelumbo nucifera HOM05D003535 ORTHO05D003986 5.3e-18 95.9 297 32.3
Ciclev10012366m.g Citrus clementina HOM05D003535 ORTHO05D003986 2.6e-17 93.6 287 34.5
PSO161G0011 Papaver somniferum HOM05D003535 ORTHO05D003986 4.5e-17 92.8 288 35.1
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 9.9e-17 91.7 291 32.6
Potri.008G193300 Populus trichocarpa HOM05D003535 ORTHO05D003986 2.4e-15 87.0 303 29.4
MD17G1040400 Malus domestica HOM05D003535 ORTHO05D003986 4.2e-15 86.3 294 33.0
FvH4_6g50070 Fragaria vesca HOM05D003535 ORTHO05D003986 5.4e-15 85.9 292 32.2
arahy.Tifrunner.gnm1.ann1.Y99B41 Arachis hypogaea HOM05D003535 ORTHO05D003986 7.1e-15 85.5 299 33.8
Ciclev10032090m.g Citrus clementina HOM05D003535 ORTHO05D003986 7.1e-15 85.5 297 34.3
CSS0008340 Camellia sinensis var. sinensis HOM05D003535 ORTHO05D003986 1.6e-14 84.3 305 31.8
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.1e-14 84.0 292 31.5
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.1e-14 84.0 292 31.5
CSS0014348 Camellia sinensis var. sinensis HOM05D003535 ORTHO05D003986 2.7e-14 83.6 305 31.8
Manes.01G195800 Manihot esculenta HOM05D003535 ORTHO05D003986 2.7e-14 83.6 303 29.4
TAR622G1103 Trochodendron aralioides HOM05D003535 ORTHO05D003986 3.5e-14 83.2 231 31.6
CiPaw.04G022500 Carya illinoinensis HOM05D003535 ORTHO05D003986 6.0e-14 82.4 280 31.4
RcHm_v2.0_Chr2g0170341 Rosa chinensis HOM05D003535 ORTHO05D003986 6.0e-14 82.4 292 33.2
Lj2g0022595 Lotus japonicus HOM05D003535 ORTHO05D003986 1.8e-13 80.9 308 29.9
Atru.chr11.1948 Acer truncatum HOM05D003535 ORTHO05D003986 3.0e-13 80.1 298 31.2
Aqoxy3G00881 Aquilegia oxysepala HOM05D003535 ORTHO05D003986 5.1e-13 79.3 340 29.7
ATR1101G092 Amborella trichopoda HOM05D003535 ORTHO05D003986 6.7e-13 79.0 307 30.9
arahy.Tifrunner.gnm1.ann1.FE2K59 Arachis hypogaea HOM05D003535 ORTHO05D003986 6.7e-13 79.0 313 31.6
Eucgr.K02879 Eucalyptus grandis HOM05D003535 ORTHO05D003986 1.1e-12 78.2 298 29.5
Cpa.g.sc14.83 Carica papaya HOM05D003535 ORTHO05D003986 2.5e-12 77.0 279 32.3
Rhsim12G0050600 Rhododendron simsii HOM05D003535 ORTHO05D003986 3.3e-12 76.6 305 31.5
vmacro01199 Vaccinium macrocarpon HOM05D003535 ORTHO05D003986 3.3e-12 76.6 306 30.4
Eucgr.B02565 Eucalyptus grandis HOM05D003535 ORTHO05D003986 4.3e-12 76.3 296 27.4
Manes.05G092900 Manihot esculenta HOM05D003535 ORTHO05D003986 4.3e-12 76.3 306 31.0
arahy.Tifrunner.gnm1.ann1.KT3LL4 Arachis hypogaea HOM05D003535 ORTHO05D003986 5.6e-12 75.9 307 31.3
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 5.6e-12 75.9 288 31.2
Sc20g0002750 Simmondsia chinensis HOM05D003535 ORTHO05D003986 5.6e-12 75.9 292 30.5
CiPaw.05G145800 Carya illinoinensis HOM05D003535 ORTHO05D003986 7.4e-12 75.5 299 29.4
Lalb_Chr16g0382501 Lupinus albus HOM05D003535 ORTHO05D003986 7.4e-12 75.5 304 28.6
Actinidia15000 Actinidia chinensis HOM05D003535 ORTHO05D003986 9.6e-12 75.1 304 28.9
MELO3C002939.2 Cucumis melo HOM05D003535 ORTHO05D003986 9.6e-12 75.1 297 29.6
Duzib251G0037 Durio zibethinus HOM05D003535 ORTHO05D003986 9.6e-12 75.1 305 29.8
Duzib251G0917 Durio zibethinus HOM05D003535 ORTHO05D003986 9.6e-12 75.1 305 30.8
Thecc.02G240800 Theobroma cacao HOM05D003535 ORTHO05D003986 1.3e-11 74.7 301 30.6
Haze_14626 Corylus avellana HOM05D003535 ORTHO05D003986 1.6e-11 74.3 285 30.9
vmacro16290 Vaccinium macrocarpon HOM05D003535 ORTHO05D003986 2.1e-11 73.9 299 32.1
Gohir.A12G142200 Gossypium hirsutum HOM05D003535 ORTHO05D003986 3.7e-11 73.2 309 30.4
Hma1.2p1_0697F.1_g205050 Hydrangea macrophylla HOM05D003535 ORTHO05D003986 3.7e-11 73.2 150 41.3
Actinidia27767 Actinidia chinensis HOM05D003535 ORTHO05D003986 6.2e-11 72.4 302 29.1
Gohir.D12G147100 Gossypium hirsutum HOM05D003535 ORTHO05D003986 8.1e-11 72.0 309 30.1
Rhsim12G0125300 Rhododendron simsii HOM05D003535 ORTHO05D003986 1.1e-10 71.6 331 29.0
PGR044G1333 Punica granatum HOM05D003535 ORTHO05D003986 1.8e-10 70.9 313 30.4
CsaV3_5G025420 Cucumis sativus L. HOM05D003535 ORTHO05D003986 2.4e-10 70.5 296 30.1
Medtr5g035810 Medicago truncatula HOM05D003535 ORTHO05D003986 3.1e-10 70.1 309 31.7
FvH4_4g35140 Fragaria vesca HOM05D003535 ORTHO05D003986 4.0e-10 69.7 306 28.1
Gorai.008G158300 Gossypium raimondii HOM05D003535 ORTHO05D003986 4.0e-10 69.7 308 29.2
MD16G1085300 Malus domestica HOM05D003535 ORTHO05D003986 6.9e-10 68.9 298 28.2
EL10Ac7g18005 Beta vulgaris HOM05D003535 ORTHO05D003986 9.0e-10 68.6 292 29.5
Potri.010G036500 Populus trichocarpa HOM05D003535 ORTHO05D003986 9.0e-10 68.6 300 27.7
Prupe.1G260800 Prunus persica HOM05D003535 ORTHO05D003986 1.2e-09 68.2 300 28.7
Psat2g113240 Pisum sativum HOM05D003535 ORTHO05D003986 2.0e-09 67.4 306 28.1
Sed0012956 Sechium edule HOM05D003535 ORTHO05D003986 2.0e-09 67.4 299 29.1
VMungo1215G1093 Vigna mungo HOM05D003535 ORTHO05D003986 2.0e-09 67.4 306 28.8
GSVIVG01020154001 Vitis vinifera HOM05D003535 ORTHO05D003986 4.5e-09 66.2 297 27.6
Cfa007471 Carpinus fangiana HOM05D003535 ORTHO05D003986 7.6e-09 65.5 287 29.3
Sabra10G0028600 Salix brachista HOM05D003535 ORTHO05D003986 7.6e-09 65.5 300 28.0
TWI36G0475 Tripterygium wilfordii HOM05D003535 ORTHO05D003986 9.9e-09 65.1 320 30.3
FAN12G2559 Fragaria x ananassa HOM05D003535 ORTHO05D003986 1.3e-08 64.7 318 27.7
Dinv31119 Davidia involucrata HOM05D003535 ORTHO05D003986 1.7e-08 64.3 296 28.7
Hma1.2p1_0160F.1_g070560 Hydrangea macrophylla HOM05D003535 ORTHO05D003986 1.7e-08 64.3 301 29.2
Hund25313 Selenicereus undatus HOM05D003535 ORTHO05D003986 1.7e-08 64.3 326 30.4
Actinidia08185 Actinidia chinensis HOM05D003535 ORTHO05D003986 2.2e-08 63.9 302 29.1
Os04g0465000 Oryza sativa ssp. japonica HOM05D003535 ORTHO05D003986 2.2e-08 63.9 319 30.4
Phvul.002G076000 Phaseolus vulgaris HOM05D003535 ORTHO05D003986 2.2e-08 63.9 307 28.7
arahy.Tifrunner.gnm1.ann1.95J0BI Arachis hypogaea HOM05D003535 ORTHO05D003986 2.9e-08 63.5 326 29.1
Gohir.A04G098600 Gossypium hirsutum HOM05D003535 ORTHO05D003986 2.9e-08 63.5 325 28.0
AUR62001212 Chenopodium quinoa HOM05D003535 ORTHO05D003986 3.8e-08 63.2 205 33.7
Duzib248G0495 Durio zibethinus HOM05D003535 ORTHO05D003986 3.8e-08 63.2 332 28.0
TPR.G13941 Trifolium pratense HOM05D003535 ORTHO05D003986 3.8e-08 63.2 304 28.6
Glyma.01G036700 Glycine max HOM05D003535 ORTHO05D003986 4.9e-08 62.8 314 29.3
Cfa009095 Carpinus fangiana HOM05D003535 ORTHO05D003986 6.4e-08 62.4 293 29.7
Glyma.02G029300 Glycine max HOM05D003535 ORTHO05D003986 8.4e-08 62.0 314 30.6
QL03p067125 Quercus lobata HOM05D003535 ORTHO05D003986 8.4e-08 62.0 303 28.7
Thecc.04G003300 Theobroma cacao HOM05D003535 ORTHO05D003986 8.4e-08 62.0 309 26.9
FAN07G1389 Fragaria x ananassa HOM05D003535 ORTHO05D003986 1.1e-07 61.6 317 26.5
Zm00001eb080440 Zea mays HOM05D003535 ORTHO05D003986 1.1e-07 61.6 158 30.4
Gohir.D04G138200 Gossypium hirsutum HOM05D003535 ORTHO05D003986 1.9e-07 60.8 326 27.9
CAN.G159.17 Capsicum annuum HOM05D003535 ORTHO05D003986 2.4e-07 60.5 154 32.5
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 4.2e-07 59.7 285 28.4
ClCG09G022140 Citrullus lanatus HOM05D003535 ORTHO05D003986 7.1e-07 58.9 332 27.7
Ca_18085_v3 Cicer arietinum L. HOM05D003535 ORTHO05D003986 1.6e-06 57.8 299 27.1
Gorai.012G123100 Gossypium raimondii HOM05D003535 ORTHO05D003986 2.1e-06 57.4 312 27.6
Gohir.A09G024600 Gossypium hirsutum HOM05D003535 ORTHO05D003986 2.7e-06 57.0 293 29.4
PGSC0003DMG400015612 Solanum tuberosum HOM05D003535 ORTHO05D003986 2.7e-06 57.0 147 32.0
AUR62022117 Chenopodium quinoa HOM05D003535 ORTHO05D003986 4.6e-06 56.2 187 31.0
PGR119G2209 Punica granatum HOM05D003535 ORTHO05D003986 4.6e-06 56.2 304 27.3
Ah.08g218580 Amaranthus hybridus HOM05D000025 ORTHO05D000040 6.0e-06 55.8 67 49.3
MD13G1085900 Malus domestica HOM05D003535 ORTHO05D003986 6.0e-06 55.8 300 27.7
Sopen05g002290 Solanum pennellii HOM05D003535 ORTHO05D003986 6.0e-06 55.8 147 32.7
Solyc05g006320.4 Solanum lycopersicum HOM05D003535 ORTHO05D003986 7.9e-06 55.5 147 31.3


User provided reference genes

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