Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 2.0e-98 362.5 183 100.0
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 1.7e-86 322.8 169 95.9
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 1.7e-86 322.8 169 95.9
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 6.5e-86 320.9 169 94.7
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 4.0e-83 311.6 169 91.1
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 6.8e-83 310.8 167 91.0
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 6.8e-83 310.8 192 85.4
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 2.0e-82 309.3 169 89.3
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 2.0e-82 309.3 186 86.6
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 2.6e-82 308.9 169 89.3
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 2.6e-82 308.9 169 89.3
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 3.4e-82 308.5 169 89.3
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 3.4e-82 308.5 169 89.9
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 3.4e-82 308.5 169 90.5
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 3.4e-82 308.5 169 89.9
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 4.4e-82 308.1 169 89.3
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 4.4e-82 308.1 167 89.8
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 5.7e-82 307.8 166 88.6
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 9.8e-82 307.0 169 89.3
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 1.7e-81 306.2 168 91.1
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 2.2e-81 305.8 168 88.1
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 2.2e-81 305.8 169 89.3
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 3.7e-81 305.1 168 88.7
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 4.9e-81 304.7 167 88.0
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 4.9e-81 304.7 169 88.2
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 4.9e-81 304.7 169 88.8
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 6.3e-81 304.3 169 88.8
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 1.1e-80 303.5 169 87.0
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.4e-80 303.1 168 87.5
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 1.8e-80 302.8 169 87.0
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 1.8e-80 302.8 166 88.6
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.8e-80 302.8 166 88.6
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.8e-80 302.8 166 88.6
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.8e-80 302.8 168 87.5
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 1.8e-80 302.8 166 88.6
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.1e-80 302.0 166 88.6
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 4.1e-80 301.6 169 87.0
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 4.1e-80 301.6 167 87.4
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 5.4e-80 301.2 168 87.5
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 5.4e-80 301.2 176 83.0
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 9.2e-80 300.4 169 87.0
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 1.2e-79 300.1 169 87.0
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 2.0e-79 299.3 166 86.1
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 2.7e-79 298.9 169 87.0
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 3.5e-79 298.5 166 86.7
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 3.5e-79 298.5 169 87.0
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 4.5e-79 298.1 169 85.8
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 1.0e-78 297.0 169 84.6
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 1.0e-78 297.0 169 85.8
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.0e-78 297.0 167 87.4
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 1.3e-78 296.6 169 84.6
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 1.7e-78 296.2 169 86.4
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.7e-78 296.2 169 87.6
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 2.9e-78 295.4 169 86.4
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 8.6e-78 293.9 169 84.0
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 2.5e-77 292.4 169 85.8
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 4.3e-77 291.6 182 79.1
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 4.3e-77 291.6 169 83.4
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 4.3e-77 291.6 207 72.9
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 4.3e-77 291.6 169 83.4
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 7.3e-77 290.8 169 82.2
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.5e-77 290.4 183 79.8
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.2e-76 290.0 183 79.8
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.2e-76 290.0 183 79.8
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 1.2e-76 290.0 169 82.2
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 1.6e-76 289.7 169 82.8
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 2.1e-76 289.3 169 82.2
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 3.6e-76 288.5 169 82.2
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 4.7e-76 288.1 169 82.2
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 6.1e-76 287.7 169 83.4
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 6.1e-76 287.7 169 83.4
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 6.1e-76 287.7 169 83.4
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 8.0e-76 287.3 169 82.8
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 2.3e-75 285.8 168 84.5
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 3.0e-75 285.4 169 82.2
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 3.0e-75 285.4 169 85.2
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 8.9e-75 283.9 169 81.7
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.5e-74 283.1 169 82.2
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.0e-74 282.7 169 81.7
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 7.5e-74 280.8 167 82.0
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.2e-73 279.3 214 68.7
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 3.7e-73 278.5 169 78.7
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 3.7e-73 278.5 226 65.9
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 4.9e-73 278.1 167 79.0
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 4.9e-73 278.1 149 90.6
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 8.3e-73 277.3 169 80.5
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 8.3e-73 277.3 149 87.9
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 8.3e-73 277.3 169 78.7
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.8e-72 276.2 169 79.3
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.8e-72 276.2 169 79.9
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.8e-72 276.2 149 88.6
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 5.4e-72 274.6 197 71.1
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 5.4e-72 274.6 158 87.3
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 7.0e-72 274.2 145 92.4
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 9.2e-72 273.9 149 88.6
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 1.2e-71 273.5 169 76.3
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.2e-71 273.5 169 79.3
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 4.6e-71 271.6 158 86.7
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 7.8e-71 270.8 176 77.8
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 1.0e-70 270.4 173 77.5
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 1.0e-70 270.4 148 87.2
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 1.3e-70 270.0 143 90.9
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.3e-70 269.2 147 87.1
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 2.3e-70 269.2 153 86.3
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 2.3e-70 269.2 149 85.2
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 3.9e-70 268.5 167 77.2
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 6.6e-70 267.7 166 79.5
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 8.6e-70 267.3 166 80.7
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 8.0e-68 260.8 153 84.3
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 8.0e-68 260.8 177 76.3
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 2.3e-67 259.2 167 73.1
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 2.3e-67 259.2 239 59.4
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 8.9e-67 257.3 150 82.0
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 2.0e-66 256.1 166 75.9
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 1.6e-63 246.5 149 79.9
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 1.6e-63 246.5 165 74.5
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 2.0e-63 246.1 124 94.4
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.7e-62 243.0 126 90.5
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 8.6e-62 240.7 156 78.8
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 7.3e-61 237.7 166 71.1
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 4.7e-60 235.0 170 73.5
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 4.0e-59 231.9 124 96.0
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 1.5e-58 229.9 170 67.6
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 3.4e-58 228.8 169 71.6
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 4.9e-57 224.9 152 74.3
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 4.9e-57 224.9 124 91.1
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 2.4e-56 222.6 123 83.7
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 3.2e-56 222.2 166 69.9
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 4.6e-55 218.4 121 89.3
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 6.0e-55 218.0 191 58.1
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 6.0e-55 218.0 121 88.4
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 6.0e-55 218.0 121 88.4
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 7.8e-55 217.6 157 68.2
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 1.3e-54 216.9 121 87.6
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.7e-54 216.5 132 81.8
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 3.9e-54 215.3 123 87.0
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 6.6e-54 214.5 168 67.3
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 3.6e-52 208.8 124 86.3
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 5.2e-51 204.9 152 71.1
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.6e-50 202.6 159 71.1
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 8.4e-49 197.6 141 71.6
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.4e-48 196.8 136 69.9
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 4.0e-43 178.7 106 84.9
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 2.2e-41 172.9 90 84.4
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 4.9e-41 171.8 90 92.2
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.7e-38 163.3 94 91.5
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 1.3e-33 147.1 83 90.4
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 4.2e-32 142.1 103 68.0
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 4.8e-28 128.6 94 69.1
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 8.1e-28 127.9 99 64.6
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.3e-27 125.2 73 89.0
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.5e-26 123.6 82 74.4
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 3.4e-26 122.5 103 63.1
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.8e-22 110.2 75 69.3
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.0e-22 109.4 75 68.0
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.9e-22 109.0 74 73.0
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.0e-19 99.0 64 76.6
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.8e-18 95.1 65 75.4
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 1.3e-17 94.0 153 37.9
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 2.2e-17 93.2 143 39.9
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 2.1e-15 86.7 49 89.8
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 2.1e-15 86.7 49 89.8
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.5e-13 80.5 44 75.0
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 1.9e-13 80.1 108 50.0
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 5.7e-13 78.6 167 34.7
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.4e-10 69.3 39 71.8


User provided reference genes

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