Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 5.9e-156 554.3 308 100.0
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 6.8e-152 540.8 308 97.7
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 1.4e-136 490.0 309 90.3
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 9.8e-135 483.8 309 84.1
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 1.7e-131 473.0 309 84.8
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 1.3e-123 446.8 329 81.5
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 2.4e-120 436.0 277 88.1
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 2.3e-115 419.5 286 74.1
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 5.8e-111 404.8 296 69.9
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 1.4e-109 400.2 294 70.1
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 1.6e-108 396.7 296 68.9
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.1e-108 396.4 282 71.3
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 2.7e-108 396.0 288 79.2
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 7.8e-108 394.4 303 72.3
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 2.3e-107 392.9 295 67.8
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 2.3e-107 392.9 286 69.6
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 8.7e-107 391.0 291 69.8
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.1e-106 390.6 292 70.9
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 1.5e-106 390.2 298 72.8
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 2.5e-106 389.4 299 68.6
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 2.5e-106 389.4 261 77.4
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 2.5e-106 389.4 309 64.4
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 3.3e-106 389.0 284 74.3
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 4.3e-106 388.7 293 73.4
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 5.6e-106 388.3 308 66.2
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 9.6e-106 387.5 282 68.8
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 9.6e-106 387.5 294 71.8
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 9.6e-106 387.5 291 68.0
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.3e-105 387.1 293 72.7
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 1.3e-105 387.1 293 69.6
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 1.6e-105 386.7 296 67.2
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 2.1e-105 386.3 303 73.3
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 3.6e-105 385.6 281 74.0
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 6.2e-105 384.8 292 68.2
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 1.1e-104 384.0 282 68.4
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 1.4e-104 383.6 293 67.6
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 3.1e-104 382.5 304 66.8
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 3.1e-104 382.5 293 72.7
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 3.1e-104 382.5 291 67.7
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 3.1e-104 382.5 300 69.0
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 5.3e-104 381.7 285 69.8
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 1.2e-103 380.6 308 64.3
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 1.5e-103 380.2 292 65.8
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 4.5e-103 378.6 281 74.0
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 4.5e-103 378.6 293 66.2
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 4.5e-103 378.6 308 64.9
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 5.8e-103 378.3 308 64.9
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 9.9e-103 377.5 281 68.0
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 9.9e-103 377.5 284 73.2
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 9.9e-103 377.5 278 74.8
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 1.7e-102 376.7 295 70.5
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 2.2e-102 376.3 301 69.4
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 2.2e-102 376.3 291 66.7
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 3.8e-102 375.6 295 71.2
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 3.8e-102 375.6 299 70.2
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 6.4e-102 374.8 300 65.0
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 1.1e-101 374.0 296 69.9
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 1.4e-101 373.6 300 69.0
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 1.9e-101 373.2 301 64.5
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 2.4e-101 372.9 296 70.3
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 3.2e-101 372.5 279 72.8
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.2e-101 372.5 286 69.2
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.2e-101 372.5 286 69.2
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 5.4e-101 371.7 295 70.5
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 7.1e-101 371.3 285 68.4
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 2.1e-100 369.8 302 65.2
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 2.1e-100 369.8 300 73.0
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 2.7e-100 369.4 295 64.4
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 2.7e-100 369.4 297 68.0
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 3.5e-100 369.0 297 69.7
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.0e-99 367.5 291 68.0
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 1.8e-99 366.7 285 68.1
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 2.3e-99 366.3 308 67.5
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 2.3e-99 366.3 310 71.9
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 6.7e-99 364.8 283 66.8
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.9e-98 363.2 281 70.8
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 2.5e-98 362.8 278 72.3
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 2.5e-98 362.8 296 65.2
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 5.6e-98 361.7 281 71.5
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 7.4e-98 361.3 282 66.3
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 1.6e-97 360.1 283 65.7
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 2.8e-97 359.4 278 71.9
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 3.7e-97 359.0 295 68.5
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 1.4e-96 357.1 278 70.5
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 1.5e-95 353.6 309 67.6
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 5.8e-95 351.7 291 66.0
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 1.7e-94 350.1 281 69.8
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 4.9e-94 348.6 278 67.3
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 1.4e-93 347.1 278 66.9
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.9e-93 346.7 278 64.4
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.9e-93 346.7 278 66.9
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.4e-93 346.3 278 66.9
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 3.2e-93 345.9 278 66.5
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 4.2e-93 345.5 266 66.9
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 4.2e-93 345.5 283 65.7
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 4.2e-93 345.5 279 67.4
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 5.5e-93 345.1 278 62.9
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 9.3e-93 344.4 311 66.9
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.2e-92 344.0 218 77.1
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 1.2e-92 344.0 279 64.9
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 1.6e-92 343.6 300 70.7
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 6.7e-91 338.2 241 76.3
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.5e-90 337.0 286 61.9
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 3.3e-90 335.9 267 65.2
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 3.7e-89 332.4 309 64.1
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 3.7e-89 332.4 297 65.7
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 1.4e-88 330.5 298 67.4
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 1.2e-87 327.4 287 61.7
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 1.2e-87 327.4 285 60.7
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 1.0e-86 324.3 236 69.1
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 1.7e-86 323.6 221 73.3
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 7.1e-85 318.2 293 57.7
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 1.2e-84 317.4 200 79.0
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 4.6e-84 315.5 285 61.4
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 3.9e-83 312.4 279 62.4
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 1.9e-82 310.1 300 56.0
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 4.1e-80 302.4 223 68.6
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 7.7e-79 298.1 300 62.0
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 9.7e-74 281.2 187 77.0
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 7.7e-71 271.6 289 55.7
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 1.9e-69 266.9 309 48.2
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 3.2e-69 266.2 295 51.9
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 5.1e-67 258.8 207 68.1
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 3.3e-66 256.1 231 60.2
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.1e-64 251.1 219 61.2
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.1e-64 251.1 222 59.5
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.1e-64 251.1 222 59.5
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 2.4e-64 250.0 235 57.0
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 5.3e-64 248.8 273 57.1
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 5.3e-64 248.8 195 68.7
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 3.5e-63 246.1 213 60.6
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 5.0e-62 242.3 224 60.7
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.1e-61 241.1 208 63.0
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 2.0e-58 230.3 247 52.6
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 3.1e-56 223.0 240 52.9
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 1.2e-55 221.1 200 62.0
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 2.7e-52 209.9 131 77.1
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 1.5e-50 204.1 201 51.2
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 4.4e-50 202.6 139 66.9
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 6.3e-49 198.7 129 75.2
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 1.7e-46 190.7 220 50.9
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.4e-43 181.0 126 70.6
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 1.8e-43 180.6 226 46.0
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 9.8e-42 174.9 193 49.7
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 2.3e-35 153.7 227 53.7
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 2.2e-33 147.1 186 49.5
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 4.9e-33 146.0 174 51.1
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 4.9e-33 146.0 174 51.1
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 4.9e-33 146.0 174 51.1
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 9.2e-32 141.7 300 46.7
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 9.5e-29 131.7 117 52.1
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.4e-27 127.9 171 51.5
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 3.1e-27 126.7 124 57.3
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 2.6e-26 123.6 107 62.6
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.7e-25 120.9 222 32.0
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 1.1e-21 108.2 81 72.8
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 2.5e-21 107.1 129 48.1
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 1.6e-20 104.4 82 69.5
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 3.6e-20 103.2 103 51.5
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 2.3e-19 100.5 121 43.0
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 3.4e-18 96.7 82 59.8
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 5.8e-18 95.9 60 68.3
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.2e-15 88.2 78 51.3
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 1.3e-14 84.7 179 33.5
Cc02_g39210 Coffea canephora HOM05D003601 ORTHO05D004896 3.3e-13 80.1 78 60.3
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 2.3e-11 73.9 91 47.3
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 1.2e-10 71.6 107 42.1
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.3e-09 68.2 79 43.0
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.2e-09 67.4 63 60.3
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 1.9e-08 64.3 29 86.2
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 3.2e-08 63.5 32 75.0
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 1.2e-07 61.6 32 75.0
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 4.6e-07 59.7 71 50.7
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 6.0e-07 59.3 89 41.6
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 7.8e-07 58.9 32 71.9
Sabra12G0049400 Salix brachista HOM05D000650 ORTHO05D000735 1.0e-06 58.5 38 78.9
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 1.3e-06 58.2 32 71.9
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 3.9e-06 56.6 31 71.0
Sabra17G0123400 Salix brachista HOM05D000390 ORTHO05D001192 8.6e-06 55.5 44 68.2


User provided reference genes

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