Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001796g0090 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.5e-217 759.2 378 100.0
Nitab4.5_0009709g0060 Nicotiana tabacum HOM05D003467 ORTHO05D004220 3.2e-151 538.9 345 80.0
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 1.5e-132 476.9 420 64.5
Sed0025530 Sechium edule HOM05D003467 ORTHO05D004220 5.2e-130 468.4 428 62.1
Sopen05g012590 Solanum pennellii HOM05D003467 ORTHO05D004220 1.7e-125 453.4 480 55.8
Solyc00g500228.1 Solanum lycopersicum HOM05D003467 ORTHO05D004220 1.3e-109 400.6 275 79.3
Dinv06674 Davidia involucrata HOM05D003467 ORTHO05D004220 9.6e-108 394.4 330 66.7
Peaxi162Scf00197g00034 Petunia axillaris HOM05D003467 ORTHO05D004220 2.6e-105 386.3 219 91.3
CARHR282930 Cardamine hirsuta HOM05D003467 ORTHO05D004220 1.8e-101 373.6 314 66.2
Lj2C1229G12 Lonicera japonica HOM05D003467 ORTHO05D004220 2.5e-100 369.8 230 83.5
AL3G44370 Arabidopsis lyrata HOM05D003467 ORTHO05D004220 2.8e-99 366.3 314 65.6
BNapus_Darmor_BZH_scaffold_234p00200 Brassica napus HOM05D003467 ORTHO05D004220 2.4e-98 363.2 314 65.0
BolSC28t60347H Brassica oleracea HOM05D003467 ORTHO05D004220 2.4e-98 363.2 314 65.0
BraSC48t46273Z Brassica rapa HOM05D003467 ORTHO05D004220 2.4e-98 363.2 314 65.0
Sp3g25530 Schrenkiella parvula HOM05D003467 ORTHO05D004220 3.1e-98 362.8 314 65.0
Nitab4.5_0004471g0080 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.2e-97 360.9 214 85.5
AT2G07715 Arabidopsis thaliana HOM05D003467 ORTHO05D004220 2.0e-97 360.1 314 65.0
Nn1g10002 Nelumbo nucifera HOM05D003467 ORTHO05D004220 2.2e-96 356.7 230 80.4
Actinidia34926 Actinidia chinensis HOM05D003467 ORTHO05D004220 2.5e-95 353.2 262 74.0
ClCG11G007180 Citrullus lanatus HOM05D003467 ORTHO05D004220 5.5e-95 352.1 230 79.6
CANSAT16G0031 Cannabis sativa HOM05D003467 ORTHO05D004220 1.6e-94 350.5 272 71.3
Solyc00g500103.1 Solanum lycopersicum HOM05D003467 ORTHO05D004220 7.9e-94 348.2 195 91.3
Thhalv10013769m.g Eutrema salsugineum HOM05D003467 ORTHO05D004220 1.8e-93 347.1 315 63.5
CAN.G502.14 Capsicum annuum HOM05D003467 ORTHO05D004220 1.3e-91 340.9 232 77.6
CAN.G134.20 Capsicum annuum HOM05D003467 ORTHO05D004220 4.8e-91 339.0 273 69.6
SabraMtG0006300 Salix brachista HOM05D003467 ORTHO05D004220 5.3e-90 335.5 236 77.1
Nitab4.5_0001152g0330 Nicotiana tabacum HOM05D003467 ORTHO05D004220 7.2e-87 325.1 232 75.9
SGA_v2.0_scaffold255G45505 Striga asiatica HOM05D003467 ORTHO05D004220 1.4e-85 320.9 222 78.8
Rhsim07G0055600 Rhododendron simsii HOM05D003467 ORTHO05D004220 1.1e-84 317.8 236 73.3
CsaV3_UNG208190 Cucumis sativus L. HOM05D003467 ORTHO05D004220 5.7e-84 315.5 232 73.3
MBI16_g09480_MAGBIO Magnolia biondii HOM05D003467 ORTHO05D004220 9.7e-84 314.7 269 65.4
Peaxi162Scf00507g00009 Petunia axillaris HOM05D003467 ORTHO05D004220 5.9e-81 305.4 217 76.0
ATMG00560 Arabidopsis thaliana HOM05D003467 ORTHO05D004220 3.6e-78 296.2 236 69.5
BcaC08g43711 Brassica carinata HOM05D003467 ORTHO05D004220 1.0e-77 294.7 232 69.8
SHI36699 Sapria himalayana HOM05D003467 ORTHO05D004220 4.4e-76 289.3 233 68.7
Aa31csc239G20 Aethionema arabicum HOM05D003467 ORTHO05D004220 1.0e-72 278.1 232 68.1
unitig_87.g27965 Utricularia gibba HOM05D003467 ORTHO05D004220 1.0e-72 278.1 246 67.9
Sopen06g007650 Solanum pennellii HOM05D003467 ORTHO05D004220 1.5e-71 274.2 166 84.9
SHI40343 Sapria himalayana HOM05D003467 ORTHO05D004220 2.7e-70 270.0 230 67.0
SHI42055 Sapria himalayana HOM05D003467 ORTHO05D004220 2.7e-70 270.0 230 67.0
SHI52974 Sapria himalayana HOM05D003467 ORTHO05D004220 2.7e-70 270.0 226 69.0
Nitab4.5_0002635g0050 Nicotiana tabacum HOM05D003467 ORTHO05D004220 6.1e-70 268.9 223 70.4
SHI37961 Sapria himalayana HOM05D003467 ORTHO05D004220 1.0e-69 268.1 230 66.5
SHI53305 Sapria himalayana HOM05D003467 ORTHO05D004220 1.8e-69 267.3 230 66.1
SHI52008 Sapria himalayana HOM05D003467 ORTHO05D004220 4.0e-69 266.2 224 66.5
C09p21580 Brassica napus HOM05D003467 ORTHO05D004220 2.4e-66 256.9 246 60.2
BraSC77t46654Z Brassica rapa HOM05D003467 ORTHO05D004220 1.6e-65 254.2 260 58.5
SHI51351 Sapria himalayana HOM05D003467 ORTHO05D004220 4.5e-65 252.7 230 62.2
SHI52601 Sapria himalayana HOM05D003467 ORTHO05D004220 4.5e-65 252.7 230 62.2
SHI50250 Sapria himalayana HOM05D003467 ORTHO05D004220 1.7e-64 250.8 202 68.3
SHI38192 Sapria himalayana HOM05D003467 ORTHO05D004220 3.8e-64 249.6 230 61.7
CAN.G1.25 Capsicum annuum HOM05D003467 ORTHO05D004220 1.5e-63 247.7 154 82.5
SHI37866 Sapria himalayana HOM05D003467 ORTHO05D004220 1.5e-63 247.7 230 62.6
SHI53641 Sapria himalayana HOM05D003467 ORTHO05D004220 1.9e-63 247.3 230 60.9
SHI37556 Sapria himalayana HOM05D003467 ORTHO05D004220 1.6e-62 244.2 217 64.1
Oeu039080.1 Olea europaea HOM05D003467 ORTHO05D004220 5.7e-60 235.7 157 83.4
MBI05_g05352_MAGBIO Magnolia biondii HOM05D003467 ORTHO05D004220 9.8e-60 235.0 205 65.4
SHI37209 Sapria himalayana HOM05D003467 ORTHO05D004220 2.4e-58 230.3 230 56.5
SHI38317 Sapria himalayana HOM05D003467 ORTHO05D004220 1.6e-57 227.6 230 59.1
Nitab4.5_0009703g0010 Nicotiana tabacum HOM05D003467 ORTHO05D004220 2.0e-57 227.3 141 83.0
SHI36967 Sapria himalayana HOM05D003467 ORTHO05D004220 3.5e-57 226.5 182 69.8
BolC4t23495H Brassica oleracea HOM05D003467 ORTHO05D004220 4.5e-57 226.1 172 70.3
SHI37886 Sapria himalayana HOM05D003467 ORTHO05D004220 5.9e-57 225.7 221 58.4
PGSC0003DMG401008792 Solanum tuberosum HOM05D003467 ORTHO05D004220 5.0e-56 222.6 160 76.2
SHI48358 Sapria himalayana HOM05D003467 ORTHO05D004220 8.6e-56 221.9 209 62.2
CDE02G2877 Ceratophyllum demersum HOM05D003467 ORTHO05D004220 1.1e-55 221.5 416 38.9
SHI38047 Sapria himalayana HOM05D003467 ORTHO05D004220 2.8e-54 216.9 226 57.5
SHI37879 Sapria himalayana HOM05D003467 ORTHO05D004220 1.8e-53 214.2 226 58.0
SHI52927 Sapria himalayana HOM05D003467 ORTHO05D004220 6.8e-53 212.2 221 58.8
Ciclev10005397m.g Citrus clementina HOM05D003467 ORTHO05D004220 1.5e-52 211.1 280 52.9
SHI46915 Sapria himalayana HOM05D003467 ORTHO05D004220 5.7e-52 209.1 230 55.7
SHI36996 Sapria himalayana HOM05D003467 ORTHO05D004220 1.7e-51 207.6 183 65.0
SHI52904 Sapria himalayana HOM05D003467 ORTHO05D004220 2.2e-51 207.2 230 55.7
Sed0002506 Sechium edule HOM05D003467 ORTHO05D004220 5.9e-49 199.1 207 56.5
Aqoxy4G00639 Aquilegia oxysepala HOM05D003467 ORTHO05D004220 1.7e-48 197.6 181 58.6
Nitab4.5_0020169g0010 Nicotiana tabacum HOM05D012309 ORTHO05D014791 3.6e-46 189.9 95 93.7
Nitab4.5_0006602g0040 Nicotiana tabacum HOM05D003467 ORTHO05D004220 4.7e-46 189.5 124 81.5
SHI43968 Sapria himalayana HOM05D003467 ORTHO05D004220 4.7e-46 189.5 154 71.4
Manes.02G141800 Manihot esculenta HOM05D003467 ORTHO05D004220 2.9e-43 180.3 211 48.3
BolC9t55063H Brassica oleracea HOM05D003467 ORTHO05D004220 3.7e-43 179.9 162 64.2
Nitab4.5_0012067g0060 Nicotiana tabacum HOM05D003467 ORTHO05D004220 6.4e-43 179.1 144 69.4
CARHR288290 Cardamine hirsuta HOM05D003467 ORTHO05D004220 3.2e-42 176.8 137 71.5
SHI38898 Sapria himalayana HOM05D003467 ORTHO05D004220 5.4e-42 176.0 200 55.0
CsaV3_UNG208180 Cucumis sativus L. HOM05D012309 ORTHO05D020467 1.3e-40 171.4 161 59.6
SHI52074 Sapria himalayana HOM05D003467 ORTHO05D004220 5.0e-40 169.5 246 48.0
SGA_v2.0_scaffold507G52535 Striga asiatica HOM05D003467 ORTHO05D004220 1.1e-39 168.3 183 56.8
SHI47986 Sapria himalayana HOM05D003467 ORTHO05D004220 1.1e-37 161.8 132 68.2
BcaC05g26882 Brassica carinata HOM05D003467 ORTHO05D004220 1.4e-37 161.4 217 50.2
SHI38985 Sapria himalayana HOM05D003467 ORTHO05D004220 8.9e-37 158.7 141 63.1
SHI51177 Sapria himalayana HOM05D003467 ORTHO05D004220 1.5e-36 157.9 230 47.0
Nitab4.5_0001152g0380 Nicotiana tabacum HOM05D012309 ORTHO05D011202 2.0e-36 157.5 92 83.7
Atru.chr10.2291 Acer truncatum HOM05D003467 ORTHO05D004220 9.8e-36 155.2 239 48.1
SHI34611 Sapria himalayana HOM05D003467 ORTHO05D004220 2.2e-35 154.1 132 65.9
Manes.01G181900 Manihot esculenta HOM05D003467 ORTHO05D004220 3.7e-35 153.3 181 50.3
SalBow7G2519 Salvia bowleyana HOM05D003467 ORTHO05D004220 3.7e-35 153.3 287 39.7
SalBow7G4829 Salvia bowleyana HOM05D003467 ORTHO05D004220 3.7e-35 153.3 287 39.7
SalBow1G2953 Salvia bowleyana HOM05D003467 ORTHO05D004220 3.0e-32 143.7 233 43.3
COL.COLO4_18957 Corchorus olitorius HOM05D003467 ORTHO05D004220 8.6e-32 142.1 232 47.8
CDE02G4335 Ceratophyllum demersum HOM05D003467 ORTHO05D004220 1.9e-31 141.0 192 48.4
SalBow1G6425 Salvia bowleyana HOM05D003467 ORTHO05D004220 1.6e-30 137.9 227 42.7
ATR0661G353 Amborella trichopoda HOM05D003467 ORTHO05D004220 2.8e-30 137.1 307 37.1
HanXRQChr14g0459301 Helianthus annuus HOM05D003467 ORTHO05D004220 1.1e-29 135.2 233 38.6
Sc16g0002730 Simmondsia chinensis HOM05D003467 ORTHO05D004220 5.2e-29 132.9 260 37.7
Solyc02g092280.1 Solanum lycopersicum HOM05D003467 ORTHO05D004220 4.4e-28 129.8 90 73.3
SHI54334 Sapria himalayana HOM05D003467 ORTHO05D004220 5.8e-28 129.4 114 64.0
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 9.9e-28 128.6 102 65.7
SHI44578 Sapria himalayana HOM05D003467 ORTHO05D004220 1.7e-27 127.9 84 75.0
SHI42501 Sapria himalayana HOM05D003467 ORTHO05D004220 4.9e-27 126.3 154 55.8
SHI38786 Sapria himalayana HOM05D003467 ORTHO05D004220 5.4e-26 122.9 113 63.7
Lsat_1_v5_gn_6_32340 Lactuca sativa HOM05D003467 ORTHO05D004220 2.1e-25 120.9 230 36.5
EL10Ac6g15561 Beta vulgaris HOM05D003467 ORTHO05D004220 9.5e-23 112.1 235 34.0
Lsat_1_v5_gn_1_109980 Lactuca sativa HOM05D003467 ORTHO05D004220 2.1e-22 110.9 230 35.2
SHI43969 Sapria himalayana HOM05D003467 ORTHO05D004220 2.8e-22 110.5 75 69.3
SHI44577 Sapria himalayana HOM05D003467 ORTHO05D004220 2.8e-22 110.5 75 72.0
SHI04750 Sapria himalayana HOM05D000330 ORTHO05D000209 2.0e-20 104.4 147 46.3
Hund13975 Selenicereus undatus HOM05D003467 ORTHO05D004220 2.0e-20 104.4 203 36.9
SalBow1G5399 Salvia bowleyana HOM05D003467 ORTHO05D004220 9.9e-20 102.1 117 55.6
SHI37826 Sapria himalayana HOM05D003467 ORTHO05D004220 2.2e-19 100.9 75 69.3
ATR0660G011 Amborella trichopoda HOM05D003467 ORTHO05D004220 6.4e-19 99.4 78 65.4
Migut.N03022 Erythranthe guttata HOM05D003467 ORTHO05D004220 6.4e-19 99.4 191 44.0
SHI38986 Sapria himalayana HOM05D003467 ORTHO05D004220 6.4e-19 99.4 88 64.8
Lsat_1_v5_gn_2_118881 Lactuca sativa HOM05D003467 ORTHO05D004220 8.4e-19 99.0 229 32.8
CAN.G676.26 Capsicum annuum HOM05D003467 ORTHO05D004220 1.1e-18 98.6 83 65.1
AUR62004052 Chenopodium quinoa HOM05D003467 ORTHO05D004220 2.4e-18 97.4 207 32.4
AUR62007567 Chenopodium quinoa HOM05D003467 ORTHO05D004220 9.2e-18 95.5 207 31.9
CAN.G1126.3 Capsicum annuum HOM05D012309 ORTHO05D014791 1.6e-17 94.7 50 88.0
SHI34612 Sapria himalayana HOM05D003467 ORTHO05D004220 1.6e-17 94.7 73 68.5
CAN.G72.15 Capsicum annuum HOM05D012309 ORTHO05D014791 3.5e-17 93.6 49 89.8
SHI36997 Sapria himalayana HOM05D003467 ORTHO05D004220 4.6e-17 93.2 62 72.6
Nitab4.5_0008578g0020 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.0e-16 92.0 59 81.4
CAN.G1321.12 Capsicum annuum HOM05D012309 ORTHO05D014791 1.3e-16 91.7 49 85.7
CAN.G502.13 Capsicum annuum HOM05D012309 ORTHO05D014791 2.3e-16 90.9 49 87.8
ECA238G4840 Erigeron canadensis HOM05D000460 ORTHO05D000333 8.7e-16 89.0 214 34.6
Sopen06g007660 Solanum pennellii HOM05D008609 ORTHO05D014791 4.3e-15 86.7 93 52.7
TAR381G1488 Trochodendron aralioides HOM05D012309 ORTHO05D014791 7.3e-15 85.9 48 85.4
Lsat_1_v5_gn_8_11861 Lactuca sativa HOM05D003467 ORTHO05D004220 1.6e-14 84.7 167 35.9
Lsat_1_v5_gn_5_114100 Lactuca sativa HOM05D003467 ORTHO05D004220 2.1e-14 84.3 136 40.4
unitig_22.g5752 Utricularia gibba HOM05D003467 ORTHO05D004220 8.1e-14 82.4 89 53.9
CAN.G72.9 Capsicum annuum HOM05D012309 ORTHO05D014791 5.2e-13 79.7 49 77.6
CAN.G108.65 Capsicum annuum HOM05D012309 ORTHO05D014791 6.9e-13 79.3 47 78.7
Zm00001eb180350 Zea mays HOM05D000540 ORTHO05D000681 2.0e-12 77.8 86 51.2
BcaC05g26874 Brassica carinata HOM05D003467 ORTHO05D004220 3.4e-12 77.0 202 36.1
Nitab4.5_0000651g0230 Nicotiana tabacum HOM05D044399 ORTHO05D017496 4.4e-12 76.6 63 66.7
CAN.G1447.9 Capsicum annuum HOM05D003467 ORTHO05D004220 1.3e-11 75.1 53 73.6
SalBow1G8419 Salvia bowleyana HOM05D003467 ORTHO05D004220 4.9e-11 73.2 148 37.2
SHI34991 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 71.6 38 86.8
SHI42502 Sapria himalayana HOM05D003467 ORTHO05D004220 1.9e-10 71.2 55 65.5
Nitab4.5_0000978g0040 Nicotiana tabacum HOM05D003467 ORTHO05D004220 5.4e-10 69.7 53 73.6
Lj2C1229G13 Lonicera japonica HOM05D012309 ORTHO05D014791 7.1e-10 69.3 38 81.6
Lsat_1_v5_gn_7_88480 Lactuca sativa HOM05D003467 ORTHO05D004220 9.3e-10 68.9 147 33.3
Ah.04g149890 Amaranthus hybridus HOM05D003467 ORTHO05D004220 1.6e-09 68.2 224 28.1
Lsat_1_v5_gn_4_83901 Lactuca sativa HOM05D003467 ORTHO05D004220 1.6e-09 68.2 168 31.0
ATR0660G010 Amborella trichopoda HOM05D003467 ORTHO05D004220 4.6e-09 66.6 106 43.4
SHI35194 Sapria himalayana HOM05D000540 ORTHO05D000681 4.6e-09 66.6 41 78.0
MELO3C020548.2 Cucumis melo HOM05D003467 ORTHO05D004220 6.0e-09 66.2 42 73.8
Nitab4.5_0004099g0010 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.0e-08 65.5 46 73.9
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 1.0e-08 65.5 61 60.7
ATR0661G063 Amborella trichopoda HOM05D012309 ORTHO05D014791 2.3e-08 64.3 46 67.4
SGA_v2.0_scaffold48G17845 Striga asiatica HOM05D003467 ORTHO05D004220 3.9e-08 63.5 55 65.5
Phvul.008G005400 Phaseolus vulgaris HOM05D003467 ORTHO05D004220 3.3e-07 60.5 88 46.6
Glyma.08G365200 Glycine max HOM05D003467 ORTHO05D004220 5.6e-07 59.7 87 46.0
Ca_04056_v3 Cicer arietinum L. HOM05D003467 ORTHO05D004220 2.1e-06 57.8 86 39.5
ClCG11G007190 Citrullus lanatus HOM05D003467 ORTHO05D020467 2.1e-06 57.8 27 92.6
Lj2A1229T117 Lonicera japonica HOM05D003467 ORTHO05D020467 2.1e-06 57.8 27 92.6
SHI41068 Sapria himalayana HOM05D009050 ORTHO05D020467 2.8e-06 57.4 34 79.4
TPR.G9704 Trifolium pratense HOM05D003467 ORTHO05D004220 2.8e-06 57.4 79 43.0
Rhsim02G0011900 Rhododendron simsii HOM05D006881 ORTHO05D008423 3.6e-06 57.0 36 75.0
Glyma.07G149151 Glycine max HOM05D003467 ORTHO05D004220 4.8e-06 56.6 87 44.8
Nitab4.5_0004300g0280 Nicotiana tabacum HOM05D003467 ORTHO05D004220 6.2e-06 56.2 27 96.3
VMungo1383G2739 Vigna mungo HOM05D003467 ORTHO05D004220 6.2e-06 56.2 88 42.0
MELO3C035711.2 Cucumis melo HOM05D003467 ORTHO05D020467 8.1e-06 55.8 48 58.3


User provided reference genes

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