Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001764g0130 Nicotiana tabacum HOM05D009316 ORTHO05D007933 6.4e-51 203.8 101 100.0
Nitab4.5_0005728g0020 Nicotiana tabacum HOM05D000136 ORTHO05D007933 2.5e-18 95.5 49 93.9
Sopen12g021990 Solanum pennellii HOM05D000136 ORTHO05D007933 1.8e-16 89.4 49 83.7
Peaxi162Scf00034g00143 Petunia axillaris HOM05D000136 ORTHO05D007933 3.0e-16 88.6 48 89.6
Solyc12g042830.3 Solanum lycopersicum HOM05D000136 ORTHO05D007933 3.9e-16 88.2 49 81.6
Nitab4.5_0004236g0080 Nicotiana tabacum HOM05D000136 ORTHO05D007933 8.8e-16 87.0 48 87.5
PGSC0003DMG400028624 Solanum tuberosum HOM05D000136 ORTHO05D007933 1.1e-15 86.7 48 83.3
CAN.G140.17 Capsicum annuum HOM05D000136 ORTHO05D007933 2.0e-15 85.9 49 81.6
Nitab4.5_0003722g0070 Nicotiana tabacum HOM05D000136 ORTHO05D007933 7.4e-15 84.0 48 85.4
vmacro18991 Vaccinium macrocarpon HOM05D000136 ORTHO05D007933 7.4e-15 84.0 47 80.9
Actinidia01751 Actinidia chinensis HOM05D000136 ORTHO05D007933 2.2e-14 82.4 48 77.1
Thecc.06G021900 Theobroma cacao HOM05D000136 ORTHO05D007933 2.8e-14 82.0 48 77.1
Cc04_g04290 Coffea canephora HOM05D000136 ORTHO05D007933 4.8e-14 81.3 47 78.7
PGR102G0618 Punica granatum HOM05D000136 ORTHO05D007933 4.8e-14 81.3 48 72.9
Lj3g0013985 Lotus japonicus HOM05D000136 ORTHO05D007933 8.2e-14 80.5 49 73.5
Lalb_Chr25g0279361 Lupinus albus HOM05D000136 ORTHO05D007933 1.1e-13 80.1 51 70.6
ClCG07G012640 Citrullus lanatus HOM05D001011 ORTHO05D007933 1.4e-13 79.7 48 75.0
COL.COLO4_12953 Corchorus olitorius HOM05D000136 ORTHO05D007933 1.4e-13 79.7 48 72.9
Duzib160G0787 Durio zibethinus HOM05D000136 ORTHO05D007933 1.4e-13 79.7 48 72.9
Glyma.07G030800 Glycine max HOM05D000136 ORTHO05D007933 1.4e-13 79.7 52 65.4
SGA_v2.0_scaffold26G11349 Striga asiatica HOM05D000136 ORTHO05D007933 1.4e-13 79.7 49 73.5
arahy.Tifrunner.gnm1.ann1.MVDL02 Arachis hypogaea HOM05D000136 ORTHO05D007933 2.4e-13 79.0 49 71.4
CiPaw.01G246600 Carya illinoinensis HOM05D000136 ORTHO05D007933 2.4e-13 79.0 48 68.8
Prupe.3G085200 Prunus persica HOM05D000136 ORTHO05D007933 2.4e-13 79.0 47 74.5
Eucgr.F03866 Eucalyptus grandis HOM05D000136 ORTHO05D007933 3.1e-13 78.6 48 72.9
GSVIVG01017322001 Vitis vinifera HOM05D000136 ORTHO05D007933 3.1e-13 78.6 49 69.4
arahy.Tifrunner.gnm1.ann1.Y4YZQQ Arachis hypogaea HOM05D000136 ORTHO05D007933 4.1e-13 78.2 48 72.9
Hma1.2p1_1144F.1_g261210 Hydrangea macrophylla HOM05D000136 ORTHO05D007933 4.1e-13 78.2 47 74.5
Hma1.2p1_1962F.1_g309220 Hydrangea macrophylla HOM05D000136 ORTHO05D007933 4.1e-13 78.2 47 74.5
VMungo0331G0391 Vigna mungo HOM05D000136 ORTHO05D007933 4.1e-13 78.2 49 69.4
Haze_16544 Corylus avellana HOM05D000136 ORTHO05D007933 5.3e-13 77.8 47 70.2
MELO3C017883.2 Cucumis melo HOM05D000136 ORTHO05D007933 5.3e-13 77.8 48 72.9
CsaV3_4G001560 Cucumis sativus L. HOM05D000136 ORTHO05D007933 5.3e-13 77.8 48 72.9
FAN05G4533 Fragaria x ananassa HOM05D000136 ORTHO05D007933 5.3e-13 77.8 48 68.8
QL05p029505 Quercus lobata HOM05D000136 ORTHO05D007933 5.3e-13 77.8 48 75.0
Atru.chr1.2987 Acer truncatum HOM05D000136 ORTHO05D007933 7.0e-13 77.4 47 70.2
Actinidia15773 Actinidia chinensis HOM05D000136 ORTHO05D007933 7.0e-13 77.4 48 75.0
Cpa.g.sc10.258 Carica papaya HOM05D000136 ORTHO05D007933 7.0e-13 77.4 49 69.4
Lj5C71T5 Lonicera japonica HOM05D000136 ORTHO05D007933 7.0e-13 77.4 48 75.0
Medtr4g010320 Medicago truncatula HOM05D000136 ORTHO05D007933 7.0e-13 77.4 47 72.3
Nitab4.5_0000023g0510 Nicotiana tabacum HOM05D009316 ORTHO05D285137 7.0e-13 77.4 42 83.3
Gohir.A05G126100 Gossypium hirsutum HOM05D000136 ORTHO05D007933 9.1e-13 77.0 48 68.8
Atru.chr1.2988 Acer truncatum HOM05D000136 ORTHO05D007933 1.2e-12 76.6 47 68.1
AUR62011527 Chenopodium quinoa HOM05D000136 ORTHO05D007933 1.2e-12 76.6 48 72.9
Gohir.D05G127000 Gossypium hirsutum HOM05D000136 ORTHO05D007933 1.2e-12 76.6 48 66.7
Gorai.009G131100 Gossypium raimondii HOM05D000136 ORTHO05D007933 1.2e-12 76.6 48 66.7
Manes.04G113600 Manihot esculenta HOM05D000136 ORTHO05D007933 1.2e-12 76.6 51 62.7
Nitab4.5_0000128g0010 Nicotiana tabacum HOM05D009316 ORTHO05D286724 1.2e-12 76.6 39 84.6
Nitab4.5_0000888g0170 Nicotiana tabacum HOM05D009316 ORTHO05D282502 1.2e-12 76.6 42 85.7
Potri.001G192600 Populus trichocarpa HOM05D000136 ORTHO05D007933 1.2e-12 76.6 51 68.6
TPR.G39368 Trifolium pratense HOM05D000136 ORTHO05D007933 1.2e-12 76.6 49 69.4
AUR62016346 Chenopodium quinoa HOM05D000136 ORTHO05D007933 1.6e-12 76.3 48 72.9
Dinv30596 Davidia involucrata HOM05D000136 ORTHO05D007933 1.6e-12 76.3 48 75.0
FAN13G2520 Fragaria x ananassa HOM05D000136 ORTHO05D007933 1.6e-12 76.3 51 62.7
Nitab4.5_0003115g0010 Nicotiana tabacum HOM05D009316 ORTHO05D286773 1.6e-12 76.3 37 89.2
Phvul.010G155300 Phaseolus vulgaris HOM05D000136 ORTHO05D007933 1.6e-12 76.3 49 65.3
TWI75G1547 Tripterygium wilfordii HOM05D000136 ORTHO05D007933 1.6e-12 76.3 49 69.4
Hund00524 Selenicereus undatus HOM05D000136 ORTHO05D007933 2.0e-12 75.9 48 70.8
DCAR_016259 Daucus carota HOM05D000136 ORTHO05D007933 2.6e-12 75.5 47 70.2
FvH4_6g21590 Fragaria vesca HOM05D000136 ORTHO05D007933 2.6e-12 75.5 48 66.7
FvH4_6g29880 Fragaria vesca HOM05D000136 ORTHO05D007933 2.6e-12 75.5 48 66.7
FAN01G2502 Fragaria x ananassa HOM05D000136 ORTHO05D007933 2.6e-12 75.5 48 66.7
FAN08G2645 Fragaria x ananassa HOM05D000136 ORTHO05D007933 2.6e-12 75.5 48 66.7
FAN14G4977 Fragaria x ananassa HOM05D000136 ORTHO05D007933 2.6e-12 75.5 48 66.7
FAN19G1047 Fragaria x ananassa HOM05D000136 ORTHO05D007933 2.6e-12 75.5 48 66.7
FAN25G3169 Fragaria x ananassa HOM05D000136 ORTHO05D007933 2.6e-12 75.5 48 66.7
TWI18G0508 Tripterygium wilfordii HOM05D000136 ORTHO05D007933 2.6e-12 75.5 50 70.0
Aqoxy7G02001 Aquilegia oxysepala HOM05D000136 ORTHO05D007933 3.5e-12 75.1 49 63.3
FAN02G0563 Fragaria x ananassa HOM05D000136 ORTHO05D007933 3.5e-12 75.1 48 64.6
MD17G1209800 Malus domestica HOM05D000136 ORTHO05D007933 3.5e-12 75.1 48 64.6
AL1G60810 Arabidopsis lyrata HOM05D000136 ORTHO05D007933 4.5e-12 74.7 48 70.8
FAN27G3324 Fragaria x ananassa HOM05D000136 ORTHO05D007933 4.5e-12 74.7 48 66.7
Glyma.08G212000 Glycine max HOM05D000136 ORTHO05D007933 4.5e-12 74.7 48 64.6
EL10Ac9g21910 Beta vulgaris HOM05D000136 ORTHO05D007933 5.9e-12 74.3 49 67.3
FAN18G0176 Fragaria x ananassa HOM05D000136 ORTHO05D007933 5.9e-12 74.3 48 66.7
Sp1g39110 Schrenkiella parvula HOM05D000136 ORTHO05D007933 5.9e-12 74.3 48 70.8
Aqoxy7G02211 Aquilegia oxysepala HOM05D000136 ORTHO05D007933 7.7e-12 73.9 49 61.2
Ciclev10026390m.g Citrus clementina HOM05D000136 ORTHO05D007933 7.7e-12 73.9 48 64.6
FAN06G2428 Fragaria x ananassa HOM05D000136 ORTHO05D007933 7.7e-12 73.9 48 64.6
FAN09G3041 Fragaria x ananassa HOM05D000136 ORTHO05D007933 7.7e-12 73.9 48 64.6
Nitab4.5_0003596g0050 Nicotiana tabacum HOM05D009316 ORTHO05D284697 7.7e-12 73.9 36 91.7
Nitab4.5_0004257g0030 Nicotiana tabacum HOM05D009316 ORTHO05D282833 7.7e-12 73.9 41 82.9
RcHm_v2.0_Chr2g0135771 Rosa chinensis HOM05D000136 ORTHO05D007933 7.7e-12 73.9 48 68.8
Thhalv10012289m.g Eutrema salsugineum HOM05D000136 ORTHO05D007933 1.0e-11 73.6 48 68.8
TAR636G1712 Trochodendron aralioides HOM05D000136 ORTHO05D007933 1.0e-11 73.6 49 63.3
MSTRG.9428 Avicennia marina HOM05D000136 ORTHO05D007933 1.3e-11 73.2 47 68.1
Carub.0001s4152 Capsella rubella HOM05D000136 ORTHO05D007933 1.3e-11 73.2 48 68.8
Nitab4.5_0000069g0540 Nicotiana tabacum HOM05D009316 ORTHO05D286054 1.3e-11 73.2 36 88.9
Oeu039436.1 Olea europaea HOM05D000136 ORTHO05D007933 1.3e-11 73.2 50 70.0
Oeu027808.1 Olea europaea HOM05D000020 ORTHO05D000543 1.7e-11 72.8 48 68.8
Psat7g255520 Pisum sativum HOM05D001011 ORTHO05D000851 1.7e-11 72.8 49 67.3
CANSAT56G3249 Cannabis sativa HOM05D000136 ORTHO05D007933 2.2e-11 72.4 47 61.7
Migut.D01069 Erythranthe guttata HOM05D000136 ORTHO05D007933 2.2e-11 72.4 47 63.8
FAN24G2537 Fragaria x ananassa HOM05D000136 ORTHO05D007933 2.2e-11 72.4 48 64.6
MBI04_g24601_MAGBIO Magnolia biondii HOM05D000136 ORTHO05D007933 2.9e-11 72.0 48 60.4
Nitab4.5_0001036g0180 Nicotiana tabacum HOM05D009316 ORTHO05D282797 2.9e-11 72.0 36 91.7
AT1G52560 Arabidopsis thaliana HOM05D000136 ORTHO05D007933 5.0e-11 71.2 48 66.7
BcaC08g43428 Brassica carinata HOM05D000136 ORTHO05D007933 6.5e-11 70.9 48 66.7
A06p01780 Brassica napus HOM05D000136 ORTHO05D007933 6.5e-11 70.9 48 66.7
BraA06t23395Z Brassica rapa HOM05D000136 ORTHO05D007933 6.5e-11 70.9 48 66.7
CSS0037009 Camellia sinensis var. sinensis HOM05D000136 ORTHO05D007933 6.5e-11 70.9 49 69.4
FAN03G1961 Fragaria x ananassa HOM05D000136 ORTHO05D007933 6.5e-11 70.9 49 65.3
FAN10G4040 Fragaria x ananassa HOM05D000136 ORTHO05D007933 6.5e-11 70.9 48 62.5
Nitab4.5_0000023g0500 Nicotiana tabacum HOM05D009316 ORTHO05D286215 6.5e-11 70.9 42 78.6
C06p07980 Brassica napus HOM05D000136 ORTHO05D007933 8.5e-11 70.5 48 66.7
BolC6t35881H Brassica oleracea HOM05D000136 ORTHO05D007933 8.5e-11 70.5 48 66.7
CARHR042670 Cardamine hirsuta HOM05D000136 ORTHO05D007933 1.1e-10 70.1 48 62.5
TAR625G0530 Trochodendron aralioides HOM05D000136 ORTHO05D007933 1.5e-10 69.7 49 61.2
ATR1120G191 Amborella trichopoda HOM05D000136 ORTHO05D007933 1.9e-10 69.3 47 66.0
FAN10G1813 Fragaria x ananassa HOM05D000136 ORTHO05D007933 1.9e-10 69.3 48 62.5
Nitab4.5_0000515g0120 Nicotiana tabacum HOM05D009316 ORTHO05D286471 2.5e-10 68.9 42 71.4
Nitab4.5_0001881g0050 Nicotiana tabacum HOM05D009316 ORTHO05D284613 4.2e-10 68.2 56 62.5
Nitab4.5_0003467g0030 Nicotiana tabacum HOM05D009316 ORTHO05D283959 4.2e-10 68.2 41 75.6
THA.LOC104818026 Tarenaya hassleriana HOM05D000136 ORTHO05D007933 4.2e-10 68.2 47 63.8
PSO017G4440 Papaver somniferum HOM05D000136 ORTHO05D007933 5.5e-10 67.8 48 66.7
HanXRQChr04g0097371 Helianthus annuus HOM05D000136 ORTHO05D007933 7.2e-10 67.4 48 62.5
HanXRQChr04g0097411 Helianthus annuus HOM05D000136 ORTHO05D007933 7.2e-10 67.4 48 62.5
HanXRQChr04g0097521 Helianthus annuus HOM05D000136 ORTHO05D007933 7.2e-10 67.4 48 62.5
HanXRQChr04g0097601 Helianthus annuus HOM05D000136 ORTHO05D007933 7.2e-10 67.4 48 62.5
MBI04_g24600_MAGBIO Magnolia biondii HOM05D000136 ORTHO05D007933 7.2e-10 67.4 45 64.4
HanXRQChr04g0097581 Helianthus annuus HOM05D000136 ORTHO05D007933 9.4e-10 67.0 48 62.5
Sc10g0005880 Simmondsia chinensis HOM05D000136 ORTHO05D007933 9.4e-10 67.0 48 56.2
ECA247G2241 Erigeron canadensis HOM05D000136 ORTHO05D007933 2.1e-09 65.9 51 54.9
SalBow6G0095 Salvia bowleyana HOM05D000136 ORTHO05D007933 2.1e-09 65.9 44 65.9
SalBow6G6117 Salvia bowleyana HOM05D000136 ORTHO05D007933 2.1e-09 65.9 44 65.9
HanXRQChr04g0097331 Helianthus annuus HOM05D000136 ORTHO05D007933 2.7e-09 65.5 48 60.4
Nn8g39468 Nelumbo nucifera HOM05D000136 ORTHO05D007933 3.6e-09 65.1 48 66.7
Aa31LG10G2450 Aethionema arabicum HOM05D000136 ORTHO05D007933 6.1e-09 64.3 47 63.8
Lsat_1_v5_gn_1_33281 Lactuca sativa HOM05D000136 ORTHO05D007933 8.0e-09 63.9 44 65.9
Nitab4.5_0007133g0020 Nicotiana tabacum HOM05D009316 ORTHO05D282523 1.4e-08 63.2 33 81.8
Nitab4.5_0011417g0050 Nicotiana tabacum HOM05D009316 ORTHO05D282781 1.4e-08 63.2 36 83.3
Nitab4.5_0008776g0030 Nicotiana tabacum HOM05D009316 ORTHO05D286324 3.0e-08 62.0 37 70.3
CDE04G0680 Ceratophyllum demersum HOM05D001099 ORTHO05D007933 2.0e-07 59.3 49 53.1
Nitab4.5_0002345g0060 Nicotiana tabacum HOM05D009316 ORTHO05D284221 2.0e-07 59.3 40 70.0
FAN26G0497 Fragaria x ananassa HOM05D000136 ORTHO05D007933 2.8e-06 55.5 33 72.7
FAN11G0743 Fragaria x ananassa HOM05D000136 ORTHO05D000080 8.2e-06 53.9 57 47.4


User provided reference genes

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