Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 2.7e-252 874.8 426 100.0
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 1.2e-239 832.8 427 94.4
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 1.2e-239 832.8 427 94.4
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 4.5e-239 830.9 427 94.4
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 1.0e-238 829.7 426 94.1
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 1.4e-224 782.7 426 86.4
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 4.1e-224 781.2 392 96.7
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 1.2e-223 779.6 426 86.4
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 2.7e-223 778.5 426 86.4
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.2e-220 769.6 426 85.2
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 8.9e-219 763.5 426 84.5
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 3.4e-218 761.5 430 84.2
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 6.4e-217 757.3 426 84.0
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 1.9e-216 755.7 426 83.8
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 7.0e-216 753.8 424 84.2
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 1.2e-215 753.1 424 84.2
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 2.8e-212 741.9 426 82.6
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 3.6e-212 741.5 426 80.8
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 3.1e-211 738.4 427 82.7
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 5.8e-210 734.2 426 81.2
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 3.7e-209 731.5 424 82.8
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 9.2e-208 726.9 426 80.0
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 2.7e-207 725.3 426 80.5
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 2.7e-207 725.3 426 79.8
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 1.3e-206 723.0 435 78.2
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 1.7e-206 722.6 426 79.8
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 3.0e-206 721.8 419 80.7
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 3.9e-206 721.5 426 81.2
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 4.3e-205 718.0 419 80.4
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 8.9e-203 710.3 447 75.6
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 1.2e-202 709.9 428 79.4
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 3.4e-202 708.4 426 77.5
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 9.9e-202 706.8 434 78.8
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 1.7e-201 706.1 426 77.2
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 1.1e-200 703.4 417 78.2
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 2.7e-199 698.7 425 76.2
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 6.6e-198 694.1 426 76.3
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 8.7e-198 693.7 427 76.3
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 8.7e-198 693.7 426 75.8
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 1.9e-197 692.6 441 74.6
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 4.3e-197 691.4 409 78.2
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 1.2e-194 683.3 423 75.2
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 1.5e-194 682.9 426 76.1
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 4.4e-194 681.4 394 81.5
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 1.3e-193 679.9 426 75.1
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 2.2e-193 679.1 426 73.2
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 2.9e-193 678.7 426 73.5
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 3.8e-193 678.3 449 73.1
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 3.8e-193 678.3 417 77.5
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 2.4e-192 675.6 433 73.7
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 3.2e-192 675.2 433 73.7
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 5.4e-192 674.5 390 83.6
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 7.1e-192 674.1 433 73.7
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 2.7e-191 672.2 469 68.9
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 2.3e-190 669.1 418 74.2
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 1.5e-189 666.4 412 75.5
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 1.5e-189 666.4 448 72.8
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 1.5e-186 656.4 428 74.1
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 1.5e-186 656.4 424 73.1
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 4.5e-186 654.8 417 73.1
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 7.6e-186 654.1 429 74.1
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 3.8e-185 651.7 431 78.9
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 8.4e-185 650.6 395 77.0
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 3.2e-184 648.7 424 72.4
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 5.4e-184 647.9 432 71.3
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 2.1e-183 646.0 423 71.2
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 4.6e-183 644.8 425 72.0
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 1.8e-182 642.9 370 83.8
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 1.9e-181 639.4 429 71.1
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 4.8e-180 634.8 429 71.3
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 6.2e-180 634.4 428 71.3
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 8.1e-180 634.0 428 72.0
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 8.1e-180 634.0 428 72.0
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 1.5e-178 629.8 427 71.7
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 3.4e-178 628.6 426 71.4
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 4.5e-178 628.2 452 67.9
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 7.6e-178 627.5 394 73.1
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 8.4e-177 624.0 413 70.2
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 8.4e-177 624.0 428 71.0
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 5.5e-176 621.3 417 70.7
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 1.3e-174 616.7 394 72.1
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 5.1e-174 614.8 410 70.7
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 1.5e-173 613.2 427 69.6
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 2.8e-172 609.0 418 68.9
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 2.8e-172 609.0 418 69.6
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 1.2e-170 603.6 423 69.5
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 2.6e-170 602.4 488 61.9
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 4.2e-168 595.1 457 67.8
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 4.3e-165 585.1 423 65.7
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 2.2e-164 582.8 417 64.7
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 5.3e-163 578.2 385 74.5
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 3.6e-159 565.5 381 70.9
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 5.1e-158 561.6 342 76.0
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 7.4e-157 557.8 426 65.3
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 9.7e-157 557.4 426 60.1
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 3.8e-153 545.4 426 65.7
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 4.4e-149 531.9 435 64.1
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 7.0e-147 524.6 426 60.3
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 6.1e-143 511.5 356 65.2
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 1.2e-138 497.3 401 61.8
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 1.3e-137 493.8 397 63.0
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 2.8e-132 476.1 302 72.8
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 1.2e-122 444.1 424 57.1
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 7.7e-122 441.4 422 51.2
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 2.9e-121 439.5 423 53.2
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 4.2e-120 435.6 291 73.5
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 9.5e-120 434.5 290 73.4
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 1.6e-119 433.7 290 73.4
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 1.2e-114 417.5 424 53.3
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 5.6e-112 408.7 417 52.5
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 8.0e-111 404.8 446 50.2
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 9.8e-109 397.9 439 47.6
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 2.7e-98 363.2 432 45.4
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 8.6e-97 358.2 624 37.7
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 6.2e-95 352.1 269 61.3
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 2.9e-92 343.2 287 59.9
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 1.4e-86 324.3 265 60.8
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 6.8e-86 322.0 191 75.9
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 3.2e-83 313.2 680 32.5
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 1.4e-62 244.6 532 33.3
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 1.8e-62 244.2 318 46.2
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 5.7e-56 222.6 145 71.7
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 7.6e-53 212.2 163 68.1
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 5.3e-46 189.5 122 70.5
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 2.7e-42 177.2 107 74.8
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 4.3e-40 169.9 288 37.2
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 1.3e-39 168.3 288 37.2
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 4.5e-37 159.8 153 51.0
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 1.0e-33 148.7 90 78.9
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 1.3e-31 141.7 88 77.3
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 3.3e-24 117.1 64 87.5
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 4.4e-24 116.7 85 58.8
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 3.5e-21 107.1 58 86.2
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 7.2e-19 99.4 69 72.5
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 9.8e-16 89.0 73 54.8
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 9.1e-14 82.4 60 55.0
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 1.6e-13 81.6 464 23.3
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 7.7e-13 79.3 43 83.7
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 1.5e-08 65.1 105 39.0
TPR.G18830 Trifolium pratense HOM05D001104 ORTHO05D006624 3.4e-08 63.9 44 63.6
Medtr6g007060 Medicago truncatula HOM05D001104 ORTHO05D006624 9.1e-06 55.8 42 52.4


User provided reference genes

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