Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001701g0020 Nicotiana tabacum HOM05D006931 ORTHO05D008782 2.8e-35 153.7 73 100.0
PGSC0003DMG400006142 Solanum tuberosum HOM05D006931 ORTHO05D008782 3.4e-33 146.7 73 94.5
Sopen07g024110 Solanum pennellii HOM05D006931 ORTHO05D008782 1.7e-32 144.4 73 93.2
Nitab4.5_0001774g0100 Nicotiana tabacum HOM05D006931 ORTHO05D008782 2.2e-32 144.1 72 95.8
Peaxi162Scf00802g00211 Petunia axillaris HOM05D006931 ORTHO05D008782 2.9e-32 143.7 73 94.5
Peaxi162Scf70695g00002 Petunia axillaris HOM05D006931 ORTHO05D008782 2.9e-32 143.7 73 94.5
Solyc07g047620.3 Solanum lycopersicum HOM05D006931 ORTHO05D008782 3.8e-32 143.3 73 91.8
CAN.G805.1 Capsicum annuum HOM05D006931 ORTHO05D008782 2.4e-31 140.6 73 90.4
Dinv26621 Davidia involucrata HOM05D006931 ORTHO05D008782 3.6e-27 126.7 73 76.7
FvH4_6g40750 Fragaria vesca HOM05D006931 ORTHO05D008782 4.0e-26 123.2 72 79.2
FAN14G4269 Fragaria x ananassa HOM05D006931 ORTHO05D008782 4.0e-26 123.2 72 79.2
RcHm_v2.0_Chr2g0156201 Rosa chinensis HOM05D006931 ORTHO05D008782 4.0e-26 123.2 73 78.1
CSS0032219 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 5.3e-26 122.9 73 74.0
CSS0037608 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 5.3e-26 122.9 73 74.0
Aqoxy4G02238_Aqoxy4G02239 Aquilegia oxysepala HOM05D006931 ORTHO05D008782 6.9e-26 122.5 73 75.3
Cc05_g02580 Coffea canephora HOM05D006931 ORTHO05D008782 9.0e-26 122.1 73 74.0
Nn3g20375 Nelumbo nucifera HOM05D006931 ORTHO05D008782 9.0e-26 122.1 73 74.0
MD17G1115600 Malus domestica HOM05D006931 ORTHO05D008782 1.5e-25 121.3 73 76.7
CsaV3_6G009550 Cucumis sativus L. HOM05D006931 ORTHO05D008782 2.6e-25 120.6 72 76.4
Rhsim06G0175400 Rhododendron simsii HOM05D006931 ORTHO05D008782 4.5e-25 119.8 73 69.9
FAN02G4040 Fragaria x ananassa HOM05D006931 ORTHO05D008782 5.8e-25 119.4 73 75.3
Manes.06G016000 Manihot esculenta HOM05D006931 ORTHO05D008782 5.8e-25 119.4 73 75.3
TAR629G3292 Trochodendron aralioides HOM05D006931 ORTHO05D008782 7.6e-25 119.0 73 72.6
Ciclev10018243m.g Citrus clementina HOM05D006931 ORTHO05D008782 9.9e-25 118.6 73 72.6
MELO3C025970.2 Cucumis melo HOM05D006931 ORTHO05D008782 9.9e-25 118.6 72 75.0
FAN05G5053 Fragaria x ananassa HOM05D006931 ORTHO05D008782 9.9e-25 118.6 73 75.3
Lj8P135T27 Lonicera japonica HOM05D006931 ORTHO05D008782 1.7e-24 117.9 70 77.1
Cfa014231 Carpinus fangiana HOM05D006931 ORTHO05D008782 2.2e-24 117.5 73 72.6
Haze_12642 Corylus avellana HOM05D006931 ORTHO05D008782 2.2e-24 117.5 73 72.6
MBI19_g25579_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 2.9e-24 117.1 73 71.2
MBI19_g25580_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 2.9e-24 117.1 73 71.2
QL04p061072 Quercus lobata HOM05D006931 ORTHO05D008782 2.9e-24 117.1 73 74.0
CARHR234290 Cardamine hirsuta HOM05D006931 ORTHO05D008782 3.8e-24 116.7 72 76.4
Sed0019973 Sechium edule HOM05D006931 ORTHO05D008782 3.8e-24 116.7 73 75.3
AT4G26680 Arabidopsis thaliana HOM05D006931 ORTHO05D008782 4.9e-24 116.3 72 75.0
Potri.014G166001 Populus trichocarpa HOM05D006931 ORTHO05D008782 4.9e-24 116.3 73 72.6
Rhsim01G0212700 Rhododendron simsii HOM05D006931 ORTHO05D008782 4.9e-24 116.3 73 68.5
Aa31LG5G12250 Aethionema arabicum HOM05D006931 ORTHO05D008782 8.4e-24 115.5 72 75.0
DCAR_019687 Daucus carota HOM05D006931 ORTHO05D008782 8.4e-24 115.5 73 72.6
Thhalv10024897m.g Eutrema salsugineum HOM05D006931 ORTHO05D008782 8.4e-24 115.5 72 73.6
Sabra14G0126400 Salix brachista HOM05D006931 ORTHO05D008782 8.4e-24 115.5 73 72.6
EL10Ac6g15337 Beta vulgaris HOM05D006931 ORTHO05D008782 1.1e-23 115.2 73 71.2
QL04p060976 Quercus lobata HOM05D006931 ORTHO05D008782 1.4e-23 114.8 73 72.6
Rhsim01G0200100 Rhododendron simsii HOM05D006931 ORTHO05D008782 1.4e-23 114.8 73 67.1
Actinidia09786 Actinidia chinensis HOM05D006931 ORTHO05D008782 1.9e-23 114.4 73 67.1
MSTRG.10694 Avicennia marina HOM05D006931 ORTHO05D008782 1.9e-23 114.4 73 69.9
ClCG02G009270 Citrullus lanatus HOM05D006931 ORTHO05D008782 1.9e-23 114.4 73 74.0
Gohir.A04G119800 Gossypium hirsutum HOM05D006931 ORTHO05D008782 1.9e-23 114.4 73 69.9
Prupe.3G199000 Prunus persica HOM05D006931 ORTHO05D008782 1.9e-23 114.4 73 71.2
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 1.9e-23 114.4 73 71.2
Migut.B01087 Erythranthe guttata HOM05D006931 ORTHO05D008782 2.4e-23 114.0 73 67.1
Sp7g24650 Schrenkiella parvula HOM05D006931 ORTHO05D008782 2.4e-23 114.0 72 73.6
Atru.chr6.3410 Acer truncatum HOM05D000074 ORTHO05D008782 3.2e-23 113.6 73 71.2
Carub.0007s1417 Capsella rubella HOM05D006931 ORTHO05D008782 4.2e-23 113.2 72 72.2
Lsat_1_v5_gn_2_33981 Lactuca sativa HOM05D001522 ORTHO05D008782 4.2e-23 113.2 73 67.1
C01p22740 Brassica napus HOM05D003050 ORTHO05D003513 5.4e-23 112.8 72 72.2
Gohir.D04G161400 Gossypium hirsutum HOM05D006931 ORTHO05D008782 5.4e-23 112.8 73 68.5
Gorai.012G149400 Gossypium raimondii HOM05D006931 ORTHO05D008782 5.4e-23 112.8 73 68.5
THA.LOC104808862 Tarenaya hassleriana HOM05D006931 ORTHO05D008782 5.4e-23 112.8 72 72.2
Cpa.g.sc211.20 Carica papaya HOM05D006931 ORTHO05D008782 9.3e-23 112.1 73 71.2
Hund04386 Selenicereus undatus HOM05D006931 ORTHO05D008782 9.3e-23 112.1 72 69.4
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 1.2e-22 111.7 73 65.8
vmacro12097 Vaccinium macrocarpon HOM05D006931 ORTHO05D008782 1.6e-22 111.3 73 68.5
BcaC09g52253 Brassica carinata HOM05D006931 ORTHO05D008782 2.1e-22 110.9 72 70.8
Hund23024 Selenicereus undatus HOM05D006931 ORTHO05D008782 2.1e-22 110.9 72 68.1
SGA_v2.0_scaffold347G49544 Striga asiatica HOM05D006931 ORTHO05D008782 2.1e-22 110.9 73 69.9
AUR62017857 Chenopodium quinoa HOM05D006931 ORTHO05D008782 2.7e-22 110.5 68 72.1
Cfa014237 Carpinus fangiana HOM05D006931 ORTHO05D008782 3.5e-22 110.2 72 68.1
HanXRQChr17g0537601 Helianthus annuus HOM05D006931 ORTHO05D008782 3.5e-22 110.2 72 69.4
BraA01t01749Z Brassica rapa HOM05D003050 ORTHO05D003513 4.6e-22 109.8 72 69.4
BcaC09g50628 Brassica carinata HOM05D006931 ORTHO05D008782 6.0e-22 109.4 72 70.8
BolC1t02203H Brassica oleracea HOM05D003050 ORTHO05D003513 6.0e-22 109.4 72 70.8
CANSAT64G0807 Cannabis sativa HOM05D006931 ORTHO05D008782 6.0e-22 109.4 68 70.6
HanXRQChr04g0126531 Helianthus annuus HOM05D006931 ORTHO05D008782 6.0e-22 109.4 72 69.4
HPP92_013549 Vanilla planifolia HOM05D006931 ORTHO05D008782 6.0e-22 109.4 73 65.8
Atru.chr6.3406 Acer truncatum HOM05D006931 ORTHO05D008782 7.9e-22 109.0 68 70.6
AUR62015178 Chenopodium quinoa HOM05D006931 ORTHO05D008782 7.9e-22 109.0 68 72.1
Duzib133G1060 Durio zibethinus HOM05D006931 ORTHO05D008782 7.9e-22 109.0 73 68.5
SHI10148 Sapria himalayana HOM05D006931 ORTHO05D008782 1.8e-21 107.8 73 68.5
Ah.10g034380 Amaranthus hybridus HOM05D006931 ORTHO05D008782 2.3e-21 107.5 72 68.1
A01p17940 Brassica napus HOM05D003050 ORTHO05D003513 2.3e-21 107.5 72 69.4
AUR62003544 Chenopodium quinoa HOM05D006931 ORTHO05D008782 2.3e-21 107.5 68 70.6
Hma1.2p1_0253F.1_g103010 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 2.3e-21 107.5 66 69.7
Hma1.2p1_2484F.1_g323040 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 2.3e-21 107.5 66 69.7
PGR142G3220 Punica granatum HOM05D006931 ORTHO05D008782 3.9e-21 106.7 73 63.0
ATR1159G005 Amborella trichopoda HOM05D006931 ORTHO05D008782 1.5e-20 104.8 73 61.6
Medtr7g090340 Medicago truncatula HOM05D006931 ORTHO05D008782 1.9e-20 104.4 73 63.0
CiPaw.03G280700 Carya illinoinensis HOM05D006931 ORTHO05D008782 4.3e-20 103.2 64 73.4
SalBow1G4479 Salvia bowleyana HOM05D006931 ORTHO05D008782 4.3e-20 103.2 69 66.7
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 9.6e-20 102.1 73 64.4
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 9.6e-20 102.1 73 64.4
Eucgr.G01771 Eucalyptus grandis HOM05D006931 ORTHO05D008782 2.8e-19 100.5 64 68.8
AL7G26160 Arabidopsis lyrata HOM05D006931 ORTHO05D008782 4.8e-19 99.8 60 76.7
VMungo0331G0870 Vigna mungo HOM05D006931 ORTHO05D008782 6.9e-18 95.9 73 63.0
TPR.G8749 Trifolium pratense HOM05D006931 ORTHO05D008782 2.0e-17 94.4 73 57.5
Sc07g0001940 Simmondsia chinensis HOM05D006931 ORTHO05D008782 3.4e-17 93.6 65 61.5
Phvul.010G143400 Phaseolus vulgaris HOM05D006931 ORTHO05D008782 4.5e-17 93.2 73 60.3
Psat4g195880 Pisum sativum HOM05D006931 ORTHO05D008782 5.8e-17 92.8 70 57.1
Cfa014238 Carpinus fangiana HOM05D006931 ORTHO05D008782 7.6e-17 92.4 54 75.9
Glyma.08G199100 Glycine max HOM05D006931 ORTHO05D008782 8.4e-16 89.0 66 63.6
Atru.chr1.3931 Acer truncatum HOM05D006931 ORTHO05D008782 2.5e-15 87.4 55 70.9
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.5e-15 87.4 73 56.2
Oeu052201.2 Olea europaea HOM05D006931 ORTHO05D008782 1.6e-14 84.7 71 59.2
CSS0005617 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 2.1e-14 84.3 54 66.7
Gohir.A07G164200 Gossypium hirsutum HOM05D006931 ORTHO05D008782 8.7e-13 79.0 54 64.8
Manes.05G013300 Manihot esculenta HOM05D006931 ORTHO05D015207 2.0e-09 67.8 45 71.1
RcHm_v2.0_Chr4g0385181 Rosa chinensis HOM05D006931 ORTHO05D008782 3.4e-09 67.0 42 73.8
Zm00001eb027640 Zea mays HOM05D006931 ORTHO05D008782 1.4e-07 61.6 64 46.9
Dinv21282 Davidia involucrata HOM05D006931 ORTHO05D028388 4.2e-07 60.1 38 71.1
arahy.Tifrunner.gnm1.ann1.CNDX61 Arachis hypogaea HOM05D007083 ORTHO05D008801 3.5e-06 57.0 69 44.9
arahy.Tifrunner.gnm1.ann1.JD2ZC9 Arachis hypogaea HOM05D007083 ORTHO05D008801 3.5e-06 57.0 69 44.9
Lj2P412T37 Lonicera japonica HOM05D007083 ORTHO05D008801 4.6e-06 56.6 70 42.9
Gorai.008G044300 Gossypium raimondii HOM05D007083 ORTHO05D008801 7.9e-06 55.8 69 39.1
Hma1.2p1_0253F.1_g103030 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 7.9e-06 55.8 42 61.9
Hma1.2p1_2484F.1_g323045 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 7.9e-06 55.8 42 61.9
Manes.15G145600 Manihot esculenta HOM05D007083 ORTHO05D008801 7.9e-06 55.8 66 43.9
PSO339G2893 Papaver somniferum HOM05D007455 ORTHO05D009431 7.9e-06 55.8 66 36.4


User provided reference genes

Program Settings