Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 3.6e-59 231.5 125 100.0
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 4.7e-35 151.4 125 70.4
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 4.3e-28 128.3 125 63.2
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.8e-26 122.9 64 98.4
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 1.7e-24 116.3 125 58.4
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 1.2e-22 110.2 125 55.2
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 6.6e-21 104.4 125 55.2
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 1.5e-20 103.2 64 78.1
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 2.5e-20 102.4 64 76.6
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 2.5e-20 102.4 104 51.0
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 4.3e-20 101.7 112 53.6
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 7.3e-20 100.9 120 50.8
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 2.1e-19 99.4 110 53.6
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 6.2e-19 97.8 69 68.1
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 6.2e-19 97.8 69 68.1
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 8.0e-19 97.4 69 66.7
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 8.0e-19 97.4 69 66.7
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 8.0e-19 97.4 113 54.0
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 1.1e-18 97.1 68 70.6
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 1.1e-18 97.1 94 59.6
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 1.4e-18 96.7 69 66.7
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 1.4e-18 96.7 69 66.7
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 1.4e-18 96.7 69 66.7
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 2.3e-18 95.9 69 66.7
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 2.3e-18 95.9 64 71.9
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 3.1e-18 95.5 69 66.7
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 3.1e-18 95.5 69 66.7
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 4.0e-18 95.1 123 48.0
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 6.8e-18 94.4 69 66.7
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 6.8e-18 94.4 65 69.2
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 6.8e-18 94.4 65 69.2
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 8.9e-18 94.0 69 66.7
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 1.2e-17 93.6 136 48.5
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 2.0e-17 92.8 141 49.6
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 3.4e-17 92.0 126 46.0
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 4.4e-17 91.7 69 63.8
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 4.4e-17 91.7 69 63.8
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 4.4e-17 91.7 69 63.8
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 5.8e-17 91.3 65 66.2
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 9.8e-17 90.5 61 73.8
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 9.8e-17 90.5 66 68.2
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 1.3e-16 90.1 66 66.7
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 1.7e-16 89.7 61 75.4
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.7e-16 89.7 129 45.0
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 2.2e-16 89.4 61 72.1
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 2.2e-16 89.4 118 45.8
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 2.2e-16 89.4 117 47.9
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 2.9e-16 89.0 61 70.5
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 3.7e-16 88.6 69 69.6
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 3.7e-16 88.6 69 69.6
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 3.7e-16 88.6 69 69.6
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 3.7e-16 88.6 65 67.7
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 3.7e-16 88.6 79 62.0
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 4.9e-16 88.2 79 63.3
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 4.9e-16 88.2 104 50.0
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 8.3e-16 87.4 66 66.7
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 1.1e-15 87.0 92 54.3
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 1.1e-15 87.0 77 61.0
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.1e-15 87.0 118 47.5
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 1.4e-15 86.7 118 47.5
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.4e-15 86.7 118 47.5
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 1.4e-15 86.7 68 63.2
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 1.9e-15 86.3 64 67.2
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 2.4e-15 85.9 61 72.1
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 2.4e-15 85.9 61 70.5
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 3.2e-15 85.5 110 50.9
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 4.1e-15 85.1 125 43.2
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 4.1e-15 85.1 125 43.2
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 4.1e-15 85.1 120 48.3
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.1e-15 85.1 66 66.7
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.1e-15 85.1 66 66.7
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 4.1e-15 85.1 58 69.0
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 5.4e-15 84.7 94 47.9
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 5.4e-15 84.7 61 68.9
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 7.0e-15 84.3 58 67.2
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 9.2e-15 84.0 59 66.1
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 9.2e-15 84.0 70 60.0
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 1.2e-14 83.6 80 62.5
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.6e-14 83.2 134 41.0
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 1.6e-14 83.2 64 64.1
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 2.1e-14 82.8 61 62.3
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 2.7e-14 82.4 100 50.0
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 3.5e-14 82.0 98 45.9
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 7.8e-14 80.9 116 46.6
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 7.8e-14 80.9 78 57.7
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 7.8e-14 80.9 78 57.7
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 7.8e-14 80.9 124 42.7
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 1.3e-13 80.1 105 49.5
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 1.3e-13 80.1 96 47.9
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 1.3e-13 80.1 118 44.1
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 2.3e-13 79.3 100 48.0
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 2.3e-13 79.3 62 64.5
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 2.3e-13 79.3 62 61.3
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 3.0e-13 79.0 114 47.4
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 3.9e-13 78.6 124 44.4
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 5.1e-13 78.2 124 43.5
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 5.1e-13 78.2 124 43.5
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 1.5e-12 76.6 66 57.6
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 2.1e-11 72.8 126 41.3
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 8.1e-11 70.9 98 45.9
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 4.0e-10 68.6 49 69.4
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 4.0e-10 68.6 49 69.4
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 5.2e-10 68.2 64 60.9
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 5.2e-10 68.2 49 69.4
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 1.2e-09 67.0 90 47.8
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 1.2e-09 67.0 90 47.8
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 1.2e-09 67.0 90 47.8
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.3e-08 63.5 55 52.7
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 3.7e-08 62.0 59 50.8
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 1.4e-07 60.1 94 36.2
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 7.1e-07 57.8 53 45.3
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 1.6e-06 56.6 54 40.7
Zm00001eb159180 Zea mays HOM05D006973 ORTHO05D008636 1.6e-06 56.6 64 43.8
Eucgr.A01970 Eucalyptus grandis HOM05D006973 ORTHO05D008636 2.1e-06 56.2 69 46.4
Duzib251G0664 Durio zibethinus HOM05D006547 ORTHO05D008112 2.7e-06 55.8 53 39.6
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 3.5e-06 55.5 53 43.4
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 4.6e-06 55.1 55 38.2
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 4.6e-06 55.1 53 41.5


User provided reference genes

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