Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001617g0080 Nicotiana tabacum HOM05D000001 ORTHO05D286832 1.3e-38 162.5 80 100.0
Nitab4.5_0001617g0070 Nicotiana tabacum HOM05D000001 ORTHO05D000424 2.3e-27 125.2 73 84.9
Peaxi162Scf00366g00817 Petunia axillaris HOM05D000001 ORTHO05D000424 2.3e-27 125.2 73 86.3
Sopen02g029660 Solanum pennellii HOM05D000001 ORTHO05D000424 5.1e-27 124.0 73 83.6
Solyc02g084990.3 Solanum lycopersicum HOM05D000001 ORTHO05D000424 3.3e-26 121.3 73 82.2
Nitab4.5_0000178g0330 Nicotiana tabacum HOM05D000001 ORTHO05D000424 4.3e-26 120.9 73 82.2
PGSC0003DMG400003521 Solanum tuberosum HOM05D000001 ORTHO05D000424 9.7e-26 119.8 73 80.8
Dinv40013 Davidia involucrata HOM05D000001 ORTHO05D000424 2.0e-23 112.1 69 76.8
CAN.G358.50 Capsicum annuum HOM05D000001 ORTHO05D000424 3.8e-22 107.8 73 76.7
CiPaw.01G044400 Carya illinoinensis HOM05D000001 ORTHO05D000424 8.5e-22 106.7 73 71.2
Atru.chr3.628 Acer truncatum HOM05D000001 ORTHO05D000424 3.2e-21 104.8 69 73.9
CANSAT01G0246 Cannabis sativa HOM05D000001 ORTHO05D000424 5.5e-21 104.0 69 75.4
RcHm_v2.0_Chr2g0100951 Rosa chinensis HOM05D000001 ORTHO05D000424 1.6e-20 102.4 69 72.5
TWI73G1229 Tripterygium wilfordii HOM05D000001 ORTHO05D000424 2.7e-20 101.7 69 71.0
Prupe.7G158000 Prunus persica HOM05D000001 ORTHO05D000424 3.6e-20 101.3 69 71.0
QL06p047114 Quercus lobata HOM05D000001 ORTHO05D000424 4.7e-20 100.9 68 72.1
Duzib187G1845 Durio zibethinus HOM05D000001 ORTHO05D000424 1.4e-19 99.4 69 72.5
MSTRG.23246 Avicennia marina HOM05D000001 ORTHO05D000424 3.9e-19 97.8 73 71.2
GSVIVG01009746001 Vitis vinifera HOM05D000001 ORTHO05D000424 3.9e-19 97.8 69 65.2
CSS0004485 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000424 5.1e-19 97.4 69 71.0
Sabra05G0099300 Salix brachista HOM05D000001 ORTHO05D000424 6.7e-19 97.1 71 70.4
Thecc.01G031500 Theobroma cacao HOM05D000001 ORTHO05D000424 6.7e-19 97.1 73 64.4
Cc07_g09850 Coffea canephora HOM05D000001 ORTHO05D000424 2.6e-18 95.1 69 71.0
Sed0025772 Sechium edule HOM05D000001 ORTHO05D000424 3.3e-18 94.7 69 69.6
DCAR_017307 Daucus carota HOM05D000001 ORTHO05D000424 4.4e-18 94.4 68 64.7
GSVIVG01018923001 Vitis vinifera HOM05D000001 ORTHO05D000424 5.7e-18 94.0 69 65.2
COL.COLO4_22038 Corchorus olitorius HOM05D000001 ORTHO05D000424 7.4e-18 93.6 69 66.7
Lj4A204T69 Lonicera japonica HOM05D000001 ORTHO05D000424 7.4e-18 93.6 68 64.7
Ciclev10025631m.g Citrus clementina HOM05D000001 ORTHO05D000424 1.3e-17 92.8 69 66.7
Eucgr.I02413 Eucalyptus grandis HOM05D000001 ORTHO05D000424 1.3e-17 92.8 69 69.6
MELO3C007842.2 Cucumis melo HOM05D000001 ORTHO05D000424 1.7e-17 92.4 69 71.0
CsaV3_6G046450 Cucumis sativus L. HOM05D000001 ORTHO05D000424 1.7e-17 92.4 69 71.0
Rhsim08G0119700 Rhododendron simsii HOM05D000001 ORTHO05D000424 1.7e-17 92.4 66 71.2
Actinidia19198 Actinidia chinensis HOM05D000001 ORTHO05D000003 2.8e-17 91.7 57 71.9
MD02G1143700 Malus domestica HOM05D000001 ORTHO05D000424 2.8e-17 91.7 69 65.2
Manes.01G138100 Manihot esculenta HOM05D000001 ORTHO05D000424 2.8e-17 91.7 69 65.2
ClCG01G019730 Citrullus lanatus HOM05D000001 ORTHO05D000424 3.7e-17 91.3 69 69.6
Potri.005G120500 Populus trichocarpa HOM05D000001 ORTHO05D000424 4.8e-17 90.9 71 67.6
Cpa.g.sc6.153 Carica papaya HOM05D000001 ORTHO05D000424 8.2e-17 90.1 73 61.6
Potri.007G022000 Populus trichocarpa HOM05D000001 ORTHO05D000424 2.4e-16 88.6 71 66.2
TAR376G1121 Trochodendron aralioides HOM05D000001 ORTHO05D000424 2.4e-16 88.6 69 62.3
TAR628G0186 Trochodendron aralioides HOM05D000001 ORTHO05D000424 2.4e-16 88.6 69 62.3
Cfa004339 Carpinus fangiana HOM05D000001 ORTHO05D000424 3.1e-16 88.2 69 68.1
MBI16_g08800_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000424 3.1e-16 88.2 69 62.3
Sed0015781 Sechium edule HOM05D000001 ORTHO05D000424 3.1e-16 88.2 69 65.2
Gohir.D11G189350 Gossypium hirsutum HOM05D000001 ORTHO05D000003 9.1e-16 86.7 57 73.7
Gorai.007G201600 Gossypium raimondii HOM05D000001 ORTHO05D000003 9.1e-16 86.7 57 73.7
Haze_15062 Corylus avellana HOM05D000001 ORTHO05D000424 2.0e-15 85.5 69 68.1
vmacro17811 Vaccinium macrocarpon HOM05D000001 ORTHO05D000424 3.5e-15 84.7 66 65.2
Aqoxy6G01159 Aquilegia oxysepala HOM05D000001 ORTHO05D000424 4.5e-15 84.3 77 57.1
ECA238G1320 Erigeron canadensis HOM05D000001 ORTHO05D000424 5.9e-15 84.0 70 60.0
Lsat_1_v5_gn_2_77500 Lactuca sativa HOM05D000001 ORTHO05D000424 5.9e-15 84.0 70 60.0
HanXRQChr14g0440531 Helianthus annuus HOM05D000001 ORTHO05D000424 1.0e-14 83.2 70 61.4
VMungo1309G0344 Vigna mungo HOM05D000001 ORTHO05D000424 3.8e-14 81.3 69 56.5
Gohir.A11G182750 Gossypium hirsutum HOM05D000001 ORTHO05D000003 6.5e-14 80.5 57 71.9
Oeu027434.1 Olea europaea HOM05D000001 ORTHO05D000424 6.5e-14 80.5 69 62.3
ATR0568G231 Amborella trichopoda HOM05D000001 ORTHO05D000424 1.1e-13 79.7 69 55.1
ClCG05G018810 Citrullus lanatus HOM05D000001 ORTHO05D000424 1.9e-13 79.0 57 59.6
CsaV3_3G045360 Cucumis sativus L. HOM05D000001 ORTHO05D000424 9.4e-13 76.6 57 57.9
Ciclev10001262m.g Citrus clementina HOM05D000001 ORTHO05D000424 1.2e-12 76.3 69 52.2
Hund13997 Selenicereus undatus HOM05D000001 ORTHO05D000424 1.6e-12 75.9 73 53.4
MELO3C003813.2 Cucumis melo HOM05D000001 ORTHO05D000424 2.1e-12 75.5 57 56.1
Thecc.08G030800 Theobroma cacao HOM05D000001 ORTHO05D000424 2.1e-12 75.5 69 53.6
MBI10_g06729_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000424 2.7e-12 75.1 68 52.9
TPR.G2375 Trifolium pratense HOM05D000001 ORTHO05D000424 2.7e-12 75.1 67 59.7
PSO541G4692 Papaver somniferum HOM05D000001 ORTHO05D000424 3.6e-12 74.7 68 51.5
PSO675G7286 Papaver somniferum HOM05D000001 ORTHO05D000424 3.6e-12 74.7 68 51.5
Sc16g0002590 Simmondsia chinensis HOM05D000001 ORTHO05D000424 3.6e-12 74.7 69 52.2
Sed0023367 Sechium edule HOM05D000001 ORTHO05D000424 4.7e-12 74.3 57 59.6
Duzib093G1803 Durio zibethinus HOM05D000001 ORTHO05D000424 6.1e-12 73.9 69 53.6
Glyma.11G071300 Glycine max HOM05D000001 ORTHO05D000424 6.1e-12 73.9 69 60.9
Phvul.009G059700 Phaseolus vulgaris HOM05D000001 ORTHO05D000424 8.0e-12 73.6 69 53.6
Lalb_Chr05g0212651 Lupinus albus HOM05D000001 ORTHO05D000424 1.0e-11 73.2 53 67.9
CANSAT25G0217 Cannabis sativa HOM05D000001 ORTHO05D000424 1.4e-11 72.8 64 51.6
Glyma.01G171900 Glycine max HOM05D000001 ORTHO05D000424 1.4e-11 72.8 69 59.4
Lalb_Chr09g0322181 Lupinus albus HOM05D000001 ORTHO05D000424 1.4e-11 72.8 69 58.0
CiPaw.07G159000 Carya illinoinensis HOM05D000001 ORTHO05D000424 1.8e-11 72.4 64 54.7
Dinv39441 Davidia involucrata HOM05D000001 ORTHO05D000424 1.8e-11 72.4 57 57.9
Duzib041G0083 Durio zibethinus HOM05D000001 ORTHO05D000424 1.8e-11 72.4 70 48.6
Lj2g0020855 Lotus japonicus HOM05D000001 ORTHO05D000424 1.8e-11 72.4 69 58.0
Psat2g157640 Pisum sativum HOM05D000001 ORTHO05D000424 2.3e-11 72.0 53 66.0
RcHm_v2.0_Chr6g0301441 Rosa chinensis HOM05D000001 ORTHO05D000424 2.3e-11 72.0 69 49.3
Glyma.04G030400 Glycine max HOM05D000001 ORTHO05D000424 3.0e-11 71.6 61 57.4
AUR62007598 Chenopodium quinoa HOM05D000001 ORTHO05D000424 4.0e-11 71.2 53 62.3
Glyma.06G030500 Glycine max HOM05D000001 ORTHO05D000424 4.0e-11 71.2 53 60.4
arahy.Tifrunner.gnm1.ann1.E6ZLZ7 Arachis hypogaea HOM05D000001 ORTHO05D000424 5.2e-11 70.9 54 63.0
arahy.Tifrunner.gnm1.ann1.R3ZIXT Arachis hypogaea HOM05D000001 ORTHO05D000424 5.2e-11 70.9 57 54.4
Eucgr.F01879 Eucalyptus grandis HOM05D000001 ORTHO05D000424 5.2e-11 70.9 64 53.1
Medtr5g020890 Medicago truncatula HOM05D000001 ORTHO05D000424 5.2e-11 70.9 68 57.4
Potri.005G229600 Populus trichocarpa HOM05D000001 ORTHO05D000424 5.2e-11 70.9 55 58.2
Atru.chr13.435 Acer truncatum HOM05D000001 ORTHO05D000424 6.7e-11 70.5 69 52.2
Ah.03g141120 Amaranthus hybridus HOM05D000001 ORTHO05D000424 6.7e-11 70.5 57 56.1
FAN27G0420 Fragaria x ananassa HOM05D000001 ORTHO05D000424 6.7e-11 70.5 73 46.6
MD15G1024000 Malus domestica HOM05D000001 ORTHO05D000424 6.7e-11 70.5 69 50.7
FvH4_2g39510 Fragaria vesca HOM05D000001 ORTHO05D000424 8.8e-11 70.1 69 47.8
arahy.Tifrunner.gnm1.ann1.8QL644 Arachis hypogaea HOM05D000001 ORTHO05D000424 1.1e-10 69.7 57 52.6
FAN20G1674 Fragaria x ananassa HOM05D000001 ORTHO05D000424 1.5e-10 69.3 69 47.8
Hma1.2p1_0775F.1_g216400 Hydrangea macrophylla HOM05D000001 ORTHO05D000424 1.5e-10 69.3 57 63.2
Hma1.2p1_2914F.1_g330265 Hydrangea macrophylla HOM05D000001 ORTHO05D000424 1.5e-10 69.3 57 63.2
QL02p009129 Quercus lobata HOM05D000001 ORTHO05D000424 1.5e-10 69.3 50 62.0
arahy.Tifrunner.gnm1.ann1.T9U53V Arachis hypogaea HOM05D000001 ORTHO05D000424 2.0e-10 68.9 54 59.3
FAN15G1750 Fragaria x ananassa HOM05D000001 ORTHO05D000424 2.0e-10 68.9 69 47.8
Lj1g0013988 Lotus japonicus HOM05D000001 ORTHO05D000424 2.0e-10 68.9 53 58.5
Sp2g30260 Schrenkiella parvula HOM05D000001 ORTHO05D000424 2.0e-10 68.9 53 64.2
Sabra05G0177400 Salix brachista HOM05D000001 ORTHO05D000424 2.6e-10 68.6 49 61.2
COL.COLO4_26274 Corchorus olitorius HOM05D000001 ORTHO05D000424 3.3e-10 68.2 55 56.4
Actinidia15349 Actinidia chinensis HOM05D000001 ORTHO05D000424 5.7e-10 67.4 50 64.0
EL10As8g23914 Beta vulgaris HOM05D000001 ORTHO05D000424 5.7e-10 67.4 53 60.4
Ca_24873_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000424 5.7e-10 67.4 67 55.2
Haze_22531 Corylus avellana HOM05D000001 ORTHO05D000424 5.7e-10 67.4 54 55.6
Sed0018406 Sechium edule HOM05D000001 ORTHO05D000424 5.7e-10 67.4 54 61.1
Lalb_Chr23g0266541 Lupinus albus HOM05D000001 ORTHO05D000424 7.5e-10 67.0 56 53.6
Lj4A36T69 Lonicera japonica HOM05D000001 ORTHO05D000424 9.7e-10 66.6 53 58.5
CSS0011628 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000424 1.3e-09 66.2 50 60.0
Manes.18G019525 Manihot esculenta HOM05D000001 ORTHO05D000424 1.3e-09 66.2 50 56.0
Carub.0008s2806 Capsella rubella HOM05D000001 ORTHO05D000424 1.7e-09 65.9 50 64.0
Gohir.D05G195600 Gossypium hirsutum HOM05D000001 ORTHO05D000424 1.7e-09 65.9 69 47.8
Ca_15500_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000424 2.2e-09 65.5 49 59.2
BcaB02g10027 Brassica carinata HOM05D000001 ORTHO05D007421 2.8e-09 65.1 50 64.0
Cfa013856 Carpinus fangiana HOM05D000001 ORTHO05D000424 2.8e-09 65.1 54 57.4
MD08G1028100 Malus domestica HOM05D000001 ORTHO05D000424 3.7e-09 64.7 60 50.0
VMungo1215G2728 Vigna mungo HOM05D000001 ORTHO05D000424 3.7e-09 64.7 48 64.6
CARHR281290 Cardamine hirsuta HOM05D000001 ORTHO05D000424 4.8e-09 64.3 50 64.0
Gohir.A05G192400 Gossypium hirsutum HOM05D000001 ORTHO05D000424 4.8e-09 64.3 61 49.2
Prupe.1G376300 Prunus persica HOM05D000001 ORTHO05D000424 4.8e-09 64.3 54 51.9
BcaC06g34707 Brassica carinata HOM05D000001 ORTHO05D007421 6.3e-09 63.9 50 62.0
A07p17500 Brassica napus HOM05D000001 ORTHO05D000003 6.3e-09 63.9 50 62.0
C07p25430 Brassica napus HOM05D000001 ORTHO05D000424 6.3e-09 63.9 50 62.0
BolC7t43066H Brassica oleracea HOM05D000001 ORTHO05D000003 6.3e-09 63.9 50 62.0
BraA07t29470Z Brassica rapa HOM05D000001 ORTHO05D000424 6.3e-09 63.9 50 62.0
MD15G1257000 Malus domestica HOM05D000001 ORTHO05D000424 6.3e-09 63.9 37 81.1
BcaC04g23129 Brassica carinata HOM05D000001 ORTHO05D000424 8.2e-09 63.5 50 62.0
A09p09980 Brassica napus HOM05D000001 ORTHO05D000003 8.2e-09 63.5 50 62.0
C09p11840 Brassica napus HOM05D000001 ORTHO05D000424 8.2e-09 63.5 50 62.0
BolC9t54074H Brassica oleracea HOM05D000001 ORTHO05D000424 8.2e-09 63.5 50 62.0
BcaNung05720 Brassica carinata HOM05D000001 ORTHO05D000424 1.4e-08 62.8 49 63.3
AL8G45070 Arabidopsis lyrata HOM05D000001 ORTHO05D000424 1.8e-08 62.4 50 60.0
AT5G66460 Arabidopsis thaliana HOM05D000001 ORTHO05D000424 1.8e-08 62.4 50 60.0
Medtr3g112060 Medicago truncatula HOM05D000001 ORTHO05D000424 1.8e-08 62.4 48 58.3
Gorai.009G200500 Gossypium raimondii HOM05D000001 ORTHO05D000424 2.4e-08 62.0 69 44.9
ATR0693G337 Amborella trichopoda HOM05D000001 ORTHO05D000424 3.1e-08 61.6 54 48.1
BraA09t36644Z Brassica rapa HOM05D000001 ORTHO05D000424 3.1e-08 61.6 50 60.0
SalBow1G2694 Salvia bowleyana HOM05D000001 ORTHO05D000424 3.1e-08 61.6 49 63.3
SalBow1G3251 Salvia bowleyana HOM05D000001 ORTHO05D000424 3.1e-08 61.6 49 63.3
SalBow1G4434 Salvia bowleyana HOM05D000001 ORTHO05D000424 3.1e-08 61.6 49 63.3
SalBow1G4819 Salvia bowleyana HOM05D000001 ORTHO05D000424 3.1e-08 61.6 49 63.3
SalBow8G2994 Salvia bowleyana HOM05D000001 ORTHO05D000424 3.1e-08 61.6 49 63.3
SalBow8G3274 Salvia bowleyana HOM05D000001 ORTHO05D000424 3.1e-08 61.6 49 63.3
TPR.G12414 Trifolium pratense HOM05D000001 ORTHO05D000424 3.1e-08 61.6 50 56.0
Nitab4.5_0003265g0070 Nicotiana tabacum HOM05D000001 ORTHO05D000424 4.1e-08 61.2 50 54.0
Nitab4.5_0009228g0030 Nicotiana tabacum HOM05D000001 ORTHO05D000424 4.1e-08 61.2 54 48.1
Phvul.002G033500 Phaseolus vulgaris HOM05D000001 ORTHO05D000424 4.1e-08 61.2 46 63.0
ATR0693G377 Amborella trichopoda HOM05D000001 ORTHO05D000424 5.3e-08 60.8 54 48.1
TWI36G1327 Tripterygium wilfordii HOM05D000001 ORTHO05D000424 5.3e-08 60.8 45 55.6
Aa31LG1G14990 Aethionema arabicum HOM05D000001 ORTHO05D000424 7.0e-08 60.5 50 58.0
CAN.G1226.47 Capsicum annuum HOM05D000001 ORTHO05D000424 7.0e-08 60.5 50 52.0
Solyc04g080620.3 Solanum lycopersicum HOM05D000001 ORTHO05D000424 7.0e-08 60.5 50 52.0
Sopen04g034210 Solanum pennellii HOM05D000001 ORTHO05D000424 7.0e-08 60.5 50 52.0
PGR031G2673 Punica granatum HOM05D000001 ORTHO05D000424 9.1e-08 60.1 48 54.2
THA.LOC104821301 Tarenaya hassleriana HOM05D000001 ORTHO05D000424 9.1e-08 60.1 56 50.0
Thhalv10004263m.g Eutrema salsugineum HOM05D000001 ORTHO05D000424 1.2e-07 59.7 54 59.3
Peaxi162Scf00140g00212 Petunia axillaris HOM05D000001 ORTHO05D000424 1.2e-07 59.7 48 52.1
Glyma.14G072600 Glycine max HOM05D000001 ORTHO05D000424 1.6e-07 59.3 58 53.4
SEGI_11532 Sequoiadendron giganteum HOM05D000001 ORTHO05D000424 2.0e-07 58.9 61 44.3
Rhsim06G0030300 Rhododendron simsii HOM05D000001 ORTHO05D000424 3.5e-07 58.2 54 50.0
Glyma.17G252400 Glycine max HOM05D000001 ORTHO05D000424 4.5e-07 57.8 58 51.7
vmacro21665 Vaccinium macrocarpon HOM05D000001 ORTHO05D000424 4.5e-07 57.8 69 43.5
PGSC0003DMG400003695 Solanum tuberosum HOM05D000001 ORTHO05D000424 5.9e-07 57.4 50 48.0
Manes.05G156900 Manihot esculenta HOM05D000001 ORTHO05D000424 7.7e-07 57.0 45 55.6
Oeu063613.2 Olea europaea HOM05D000001 ORTHO05D000424 2.2e-06 55.5 45 57.8


User provided reference genes

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