Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.0e-103 379.0 182 100.0
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 8.0e-60 234.2 194 66.0
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 5.4e-56 221.5 193 63.2
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 2.7e-55 219.2 194 61.3
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 7.8e-55 217.6 194 61.9
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 1.3e-54 216.9 194 60.8
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.7e-54 216.5 194 60.8
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 5.0e-54 214.9 194 60.3
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 3.6e-52 208.8 243 51.4
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 3.1e-51 205.7 194 57.7
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 9.8e-50 200.7 194 57.7
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.2e-48 195.7 194 57.2
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 3.5e-39 165.6 150 60.0
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 1.9e-37 159.8 165 55.2
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 3.1e-35 152.5 151 56.3
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 7.1e-32 141.4 191 44.5
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 8.6e-30 134.4 194 42.8
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 8.6e-30 134.4 194 43.3
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 1.4e-27 127.1 191 40.3
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 5.2e-27 125.2 196 41.3
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 1.5e-26 123.6 195 41.0
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 1.5e-26 123.6 145 49.0
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 3.4e-26 122.5 196 42.3
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 5.8e-26 121.7 172 41.9
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 5.8e-26 121.7 195 39.5
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 5.8e-26 121.7 196 39.8
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 7.6e-26 121.3 195 41.5
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 9.9e-26 120.9 196 38.3
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 1.7e-25 120.2 196 38.8
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 2.2e-25 119.8 194 40.7
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 2.2e-25 119.8 183 40.4
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 4.9e-25 118.6 196 38.8
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 6.4e-25 118.2 196 37.2
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 6.4e-25 118.2 189 40.7
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 8.4e-25 117.9 183 39.9
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 1.1e-24 117.5 195 40.5
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.4e-24 117.1 194 38.1
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 1.4e-24 117.1 196 37.2
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.4e-24 117.1 194 39.7
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 1.9e-24 116.7 195 40.0
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 1.9e-24 116.7 179 39.7
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 1.9e-24 116.7 184 39.1
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 2.4e-24 116.3 202 40.6
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 3.2e-24 115.9 194 37.6
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 4.2e-24 115.5 180 40.6
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 1.6e-23 113.6 194 37.6
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.7e-23 112.8 160 41.9
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 1.7e-22 110.2 196 35.2
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 1.7e-22 110.2 197 38.1
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 2.3e-22 109.8 196 36.2
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 3.9e-22 109.0 166 40.4
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 8.7e-22 107.8 193 36.8
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 8.7e-22 107.8 193 36.3
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 1.1e-21 107.5 196 36.7
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 1.9e-21 106.7 194 35.6
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 3.3e-21 105.9 193 36.8
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 4.3e-21 105.5 196 38.3
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 4.3e-21 105.5 196 33.7
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 4.3e-21 105.5 196 34.7
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 5.6e-21 105.1 189 38.6
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 5.6e-21 105.1 193 36.8
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 5.6e-21 105.1 196 34.7
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 7.3e-21 104.8 173 37.6
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 9.6e-21 104.4 196 35.7
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 1.3e-20 104.0 194 35.6
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 3.6e-20 102.4 196 37.8
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 4.8e-20 102.1 197 37.6
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 8.1e-20 101.3 191 36.1
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 1.1e-19 100.9 197 34.5
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 1.8e-19 100.1 197 35.0
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 1.8e-19 100.1 197 33.5
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 1.8e-19 100.1 196 34.7
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 2.4e-19 99.8 190 36.3
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 4.0e-19 99.0 197 35.0
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 4.0e-19 99.0 194 32.0
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 4.0e-19 99.0 183 36.6
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 6.9e-19 98.2 116 46.6
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 6.9e-19 98.2 197 35.5
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 6.9e-19 98.2 193 37.3
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 6.9e-19 98.2 198 35.4
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 9.0e-19 97.8 196 35.2
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 9.0e-19 97.8 191 35.1
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 1.2e-18 97.4 187 36.4
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 1.2e-18 97.4 86 57.0
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 1.5e-18 97.1 124 48.4
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 2.6e-18 96.3 189 33.9
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 2.6e-18 96.3 197 35.5
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 3.4e-18 95.9 184 37.0
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 4.5e-18 95.5 195 33.3
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 5.8e-18 95.1 180 33.3
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 5.8e-18 95.1 180 33.9
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 7.6e-18 94.7 195 35.9
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 9.9e-18 94.4 191 34.0
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 9.9e-18 94.4 148 41.9
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 9.9e-18 94.4 195 35.9
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 1.3e-17 94.0 203 35.0
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 1.3e-17 94.0 137 42.3
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.7e-17 93.6 196 32.7
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 1.7e-17 93.6 195 34.4
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 1.7e-17 93.6 133 42.1
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 1.7e-17 93.6 188 33.5
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 2.2e-17 93.2 191 34.0
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 2.2e-17 93.2 216 32.4
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.9e-17 92.8 189 32.8
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 2.9e-17 92.8 199 33.2
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 3.8e-17 92.4 180 33.9
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 3.8e-17 92.4 185 30.8
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 3.8e-17 92.4 180 33.9
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 3.8e-17 92.4 180 33.9
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 3.8e-17 92.4 185 30.8
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.8e-17 92.4 189 33.9
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 4.9e-17 92.0 195 35.4
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 6.4e-17 91.7 185 31.9
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 6.4e-17 91.7 185 31.9
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 6.4e-17 91.7 196 38.8
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 8.4e-17 91.3 137 41.6
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 8.4e-17 91.3 127 40.9
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 1.4e-16 90.5 195 33.8
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 1.9e-16 90.1 175 33.1
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 1.9e-16 90.1 200 34.5
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 3.2e-16 89.4 112 44.6
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 4.2e-16 89.0 87 49.4
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 7.1e-16 88.2 200 32.5
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.6e-15 87.0 126 42.1
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.6e-15 87.0 86 51.2
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 3.5e-15 85.9 196 34.7
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 3.5e-15 85.9 123 42.3
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 3.5e-15 85.9 196 35.2
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 6.0e-15 85.1 195 33.8
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 7.9e-15 84.7 202 34.7
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 1.0e-14 84.3 110 44.5
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 1.8e-14 83.6 124 44.4
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 1.8e-14 83.6 124 44.4
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 3.0e-14 82.8 87 50.6
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 5.1e-14 82.0 109 42.2
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.5e-13 80.5 85 52.9
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 1.9e-13 80.1 85 52.9
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 1.9e-13 80.1 144 38.9
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 3.3e-13 79.3 118 43.2
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 4.3e-13 79.0 151 37.7
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 5.6e-13 78.6 196 31.6
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 7.4e-13 78.2 195 31.3
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 2.8e-12 76.3 85 49.4
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 3.6e-12 75.9 196 31.6
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 3.6e-12 75.9 199 31.7
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 8.1e-12 74.7 109 42.2
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 2.4e-11 73.2 180 33.9
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.4e-11 73.2 180 33.9
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 4.0e-11 72.4 123 39.0
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 5.3e-11 72.0 134 33.6
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 9.0e-11 71.2 146 37.0
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 9.0e-11 71.2 175 24.6
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 1.2e-10 70.9 146 34.9
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 2.6e-10 69.7 85 38.8
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 4.5e-10 68.9 37 81.1
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 5.8e-10 68.6 152 31.6
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.3e-09 67.4 85 44.7
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.2e-09 66.6 65 50.8
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 6.4e-09 65.1 30 96.7
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 1.9e-08 63.5 141 30.5
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 5.5e-08 62.0 116 37.9
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 7.1e-08 61.6 85 37.6
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 1.3e-06 57.4 160 26.9
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 3.0e-06 56.2 75 45.3
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 6.7e-06 55.1 140 27.9
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 8.7e-06 54.7 74 37.8


User provided reference genes

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