Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001552g0040 Nicotiana tabacum HOM05D005309 ORTHO05D006648 6.7e-93 344.0 169 100.0
PGSC0003DMG400017390 Solanum tuberosum HOM05D005309 ORTHO05D006648 6.5e-72 274.2 186 77.4
Solyc07g045070.3 Solanum lycopersicum HOM05D005309 ORTHO05D006648 2.5e-71 272.3 186 76.9
Nitab4.5_0005142g0010 Nicotiana tabacum HOM05D005309 ORTHO05D006648 3.6e-70 268.5 181 75.7
Sopen07g023630 Solanum pennellii HOM05D005309 ORTHO05D006648 4.7e-70 268.1 186 75.8
CAN.G275.11 Capsicum annuum HOM05D005309 ORTHO05D006648 1.3e-56 223.4 185 68.1
Peaxi162Scf00359g00710 Petunia axillaris HOM05D005309 ORTHO05D006648 1.3e-48 196.8 126 77.0
TAR627G0226 Trochodendron aralioides HOM05D005309 ORTHO05D006648 1.5e-39 166.8 210 48.6
Nn3g20733 Nelumbo nucifera HOM05D005309 ORTHO05D006648 2.5e-39 166.0 189 49.7
Dinv18821 Davidia involucrata HOM05D005309 ORTHO05D006648 4.2e-39 165.2 211 46.0
SGA_v2.0_scaffold73G24489 Striga asiatica HOM05D005309 ORTHO05D006648 1.0e-37 160.6 179 51.4
SalBow7G0619 Salvia bowleyana HOM05D005309 ORTHO05D006648 2.3e-37 159.5 195 47.7
Ciclev10031016m.g Citrus clementina HOM05D005309 ORTHO05D006648 3.0e-37 159.1 162 54.3
Duzib133G0867 Durio zibethinus HOM05D005309 ORTHO05D006648 3.0e-37 159.1 183 49.2
Rhsim12G0010200 Rhododendron simsii HOM05D005309 ORTHO05D006648 1.5e-36 156.8 201 48.8
Cc05_g01700 Coffea canephora HOM05D005309 ORTHO05D006648 3.4e-36 155.6 163 52.8
MSTRG.14909 Avicennia marina HOM05D005309 ORTHO05D006648 7.5e-36 154.5 166 50.6
Lj1A593G32 Lonicera japonica HOM05D005309 ORTHO05D006648 9.8e-36 154.1 152 53.9
Manes.02G208560 Manihot esculenta HOM05D005309 ORTHO05D006648 1.3e-35 153.7 184 48.9
Potri.005G204900 Populus trichocarpa HOM05D005309 ORTHO05D006648 1.3e-35 153.7 170 52.9
EL10Ac2g04244 Beta vulgaris HOM05D005309 ORTHO05D006648 4.9e-35 151.8 141 56.7
Gohir.D11G164100 Gossypium hirsutum HOM05D005309 ORTHO05D006648 1.4e-34 150.2 189 46.0
Oeu029978.1 Olea europaea HOM05D005309 ORTHO05D006648 1.8e-34 149.8 165 50.9
TWI23G0800 Tripterygium wilfordii HOM05D005309 ORTHO05D006648 1.8e-34 149.8 194 49.0
GSVIVG01020840001 Vitis vinifera HOM05D005309 ORTHO05D006648 2.4e-34 149.4 141 57.4
MELO3C022960.2 Cucumis melo HOM05D005309 ORTHO05D006648 3.1e-34 149.1 140 57.9
Hma1.2p1_0147F.1_g065830 Hydrangea macrophylla HOM05D005309 ORTHO05D006648 4.1e-34 148.7 179 47.5
CsaV3_4G031990 Cucumis sativus L. HOM05D005309 ORTHO05D006648 9.2e-34 147.5 197 47.2
Migut.M00059 Erythranthe guttata HOM05D005309 ORTHO05D006648 9.2e-34 147.5 173 47.4
Gorai.007G174900 Gossypium raimondii HOM05D005309 ORTHO05D006648 9.2e-34 147.5 189 45.5
Gohir.A11G157100 Gossypium hirsutum HOM05D005309 ORTHO05D006648 1.2e-33 147.1 187 45.5
CSS0009662 Camellia sinensis var. sinensis HOM05D005309 ORTHO05D006648 1.6e-33 146.7 175 50.3
Sed0027803 Sechium edule HOM05D005309 ORTHO05D006648 1.6e-33 146.7 186 48.4
Thecc.01G169500 Theobroma cacao HOM05D005309 ORTHO05D006648 1.6e-33 146.7 188 45.7
CSS0016258 Camellia sinensis var. sinensis HOM05D005309 ORTHO05D006648 2.0e-33 146.4 179 48.6
Ah.10g035950 Amaranthus hybridus HOM05D005309 ORTHO05D006648 2.7e-33 146.0 154 53.2
HanXRQChr01g0028511 Helianthus annuus HOM05D005309 ORTHO05D006648 2.7e-33 146.0 190 44.7
Sabra05G0155700 Salix brachista HOM05D005309 ORTHO05D006648 2.7e-33 146.0 153 53.6
Cpa.g.sc50.107 Carica papaya HOM05D005309 ORTHO05D006648 4.5e-33 145.2 142 55.6
Hma1.2p1_0147F.1_g065840 Hydrangea macrophylla HOM05D005309 ORTHO05D006648 4.5e-33 145.2 177 46.9
DCAR_016942 Daucus carota HOM05D005309 ORTHO05D006648 7.8e-33 144.4 166 48.8
ECA234G1968 Erigeron canadensis HOM05D005309 ORTHO05D006648 7.8e-33 144.4 156 50.0
Cfa023077 Carpinus fangiana HOM05D005309 ORTHO05D006648 1.3e-32 143.7 176 48.3
Haze_13536 Corylus avellana HOM05D005309 ORTHO05D006648 1.3e-32 143.7 203 45.3
Lsat_1_v5_gn_4_26360 Lactuca sativa HOM05D005309 ORTHO05D006648 1.7e-32 143.3 139 54.0
AUR62031496 Chenopodium quinoa HOM05D000026 ORTHO05D007846 3.9e-32 142.1 142 54.2
AUR62012368 Chenopodium quinoa HOM05D005309 ORTHO05D006648 5.0e-32 141.7 162 50.6
ClCG11G016530 Citrullus lanatus HOM05D005309 ORTHO05D006648 5.0e-32 141.7 171 49.7
CDE02G3568 Ceratophyllum demersum HOM05D005309 ORTHO05D006648 1.9e-31 139.8 201 44.3
Eucgr.K01225 Eucalyptus grandis HOM05D005309 ORTHO05D006648 4.3e-31 138.7 192 45.3
CiPaw.04G138300 Carya illinoinensis HOM05D005309 ORTHO05D006648 5.6e-31 138.3 203 43.3
THA.LOC104826242 Tarenaya hassleriana HOM05D005309 ORTHO05D006648 1.2e-30 137.1 144 54.9
BolC5t29253H Brassica oleracea HOM05D005309 ORTHO05D006648 1.6e-30 136.7 145 50.3
QL11p000196 Quercus lobata HOM05D005309 ORTHO05D006648 1.6e-30 136.7 145 56.6
C05p04800 Brassica napus HOM05D005309 ORTHO05D006648 2.8e-30 136.0 144 50.7
FAN14G4003 Fragaria x ananassa HOM05D005309 ORTHO05D006648 2.8e-30 136.0 169 46.7
MD17G1135100 Malus domestica HOM05D005309 ORTHO05D006648 2.8e-30 136.0 164 51.2
Hund02144 Selenicereus undatus HOM05D005309 ORTHO05D006648 2.8e-30 136.0 157 48.4
Prupe.3G177300 Prunus persica HOM05D005309 ORTHO05D006648 3.6e-30 135.6 145 52.4
PGR142G1004 Punica granatum HOM05D005309 ORTHO05D006648 4.7e-30 135.2 200 44.0
Atru.chr6.2050 Acer truncatum HOM05D005309 ORTHO05D006648 8.0e-30 134.4 171 46.8
CANSAT64G0469 Cannabis sativa HOM05D005309 ORTHO05D006648 8.0e-30 134.4 208 41.3
FAN09G0570 Fragaria x ananassa HOM05D005309 ORTHO05D006648 1.0e-29 134.0 172 46.5
A10p05200 Brassica napus HOM05D005309 ORTHO05D006648 1.4e-29 133.7 149 49.7
FAN02G0734 Fragaria x ananassa HOM05D005309 ORTHO05D006648 1.4e-29 133.7 172 46.5
Glyma.14G030100 Glycine max HOM05D005309 ORTHO05D006648 1.8e-29 133.3 180 46.1
Aqoxy4G00092 Aquilegia oxysepala HOM05D005309 ORTHO05D006648 2.3e-29 132.9 200 44.5
FvH4_6g38630 Fragaria vesca HOM05D005309 ORTHO05D006648 2.3e-29 132.9 169 46.2
Sc09g0008320 Simmondsia chinensis HOM05D005309 ORTHO05D006648 2.3e-29 132.9 150 48.7
FAN05G5670 Fragaria x ananassa HOM05D005309 ORTHO05D006648 3.1e-29 132.5 166 47.6
Zm00001eb170650 Zea mays HOM05D005309 ORTHO05D006648 4.0e-29 132.1 146 46.6
AT1G06560 Arabidopsis thaliana HOM05D005309 ORTHO05D006648 5.2e-29 131.7 163 46.0
C08p02650 Brassica napus HOM05D005309 ORTHO05D006648 6.8e-29 131.3 138 52.9
BraA10t42787Z Brassica rapa HOM05D005309 ORTHO05D006648 8.9e-29 131.0 144 49.3
PSO384G0241 Papaver somniferum HOM05D005309 ORTHO05D006648 8.9e-29 131.0 184 44.0
Thhalv10007146m.g Eutrema salsugineum HOM05D005309 ORTHO05D006648 1.2e-28 130.6 162 45.1
AL1G16590 Arabidopsis lyrata HOM05D005309 ORTHO05D006648 1.5e-28 130.2 162 47.5
BolC8t47061H Brassica oleracea HOM05D005309 ORTHO05D006648 1.5e-28 130.2 136 52.2
BcaB02g06781 Brassica carinata HOM05D005309 ORTHO05D006648 2.0e-28 129.8 142 50.7
A08p35920 Brassica napus HOM05D005309 ORTHO05D006648 2.0e-28 129.8 142 50.0
BraA08t35499Z Brassica rapa HOM05D005309 ORTHO05D006648 2.0e-28 129.8 142 50.0
CARHR006170 Cardamine hirsuta HOM05D005309 ORTHO05D006648 2.0e-28 129.8 152 48.7
Os08g0365900 Oryza sativa ssp. japonica HOM05D005309 ORTHO05D006648 2.6e-28 129.4 151 47.0
SHI03273 Sapria himalayana HOM05D005309 ORTHO05D006648 4.4e-28 128.6 152 48.0
Carub.0001s0593 Capsella rubella HOM05D005309 ORTHO05D006648 5.8e-28 128.3 140 50.0
unitig_899.g15343 Utricularia gibba HOM05D005309 ORTHO05D006648 7.5e-28 127.9 165 46.7
arahy.Tifrunner.gnm1.ann1.9TU2QX Arachis hypogaea HOM05D005309 ORTHO05D006648 9.8e-28 127.5 164 47.0
RcHm_v2.0_Chr2g0152091 Rosa chinensis HOM05D005309 ORTHO05D006648 9.8e-28 127.5 172 46.5
arahy.Tifrunner.gnm1.ann1.JRP0UJ Arachis hypogaea HOM05D005309 ORTHO05D006648 1.3e-27 127.1 164 47.0
Actinidia11207 Actinidia chinensis HOM05D005309 ORTHO05D006648 1.7e-27 126.7 178 45.5
Aa31LG1G7660 Aethionema arabicum HOM05D005309 ORTHO05D006648 1.7e-27 126.7 149 52.3
Sp1g05320 Schrenkiella parvula HOM05D005309 ORTHO05D006648 1.7e-27 126.7 140 52.9
Lalb_Chr04g0248901 Lupinus albus HOM05D005309 ORTHO05D006648 3.7e-27 125.6 148 50.7
VMungo0647G1913 Vigna mungo HOM05D005309 ORTHO05D006648 6.4e-27 124.8 155 50.3
LjContig00049g0017299 Lotus japonicus HOM05D005309 ORTHO05D006648 2.4e-26 122.9 157 46.5
Phvul.008G194100 Phaseolus vulgaris HOM05D005309 ORTHO05D006648 3.2e-26 122.5 185 46.5
Medtr5g091110 Medicago truncatula HOM05D005309 ORTHO05D006648 9.2e-26 120.9 145 50.3
HPP92_023436 Vanilla planifolia HOM05D005309 ORTHO05D006648 7.8e-25 117.9 171 45.0
Ca_06266_v3 Cicer arietinum L. HOM05D005309 ORTHO05D006648 2.3e-24 116.3 150 48.7
Psat2g017040 Pisum sativum HOM05D005309 ORTHO05D006648 5.0e-24 115.2 158 44.3
TPR.G10159 Trifolium pratense HOM05D005309 ORTHO05D006648 4.3e-23 112.1 150 47.3
vmacro08733 Vaccinium macrocarpon HOM05D005309 ORTHO05D006648 2.1e-22 109.8 296 32.1
Pp3c12_23090 Physcomitrium patens HOM05D005309 ORTHO05D006648 3.0e-16 89.4 176 35.8
SMO293G0021 Selaginella moellendorffii HOM05D005309 ORTHO05D006648 3.6e-14 82.4 133 38.3
Cre13.g606200 Chlamydomonas reinhardtii HOM05D005309 ORTHO05D006648 8.1e-14 81.3 132 36.4
MBI07_g26361_MAGBIO Magnolia biondii HOM05D005309 ORTHO05D006648 1.8e-13 80.1 146 40.4
PSO339G1684 Papaver somniferum HOM05D005309 ORTHO05D006648 4.9e-11 72.0 143 37.1
SMO111G0017 Selaginella moellendorffii HOM05D005309 ORTHO05D006648 8.3e-11 71.2 63 49.2
MBI07_g26360_MAGBIO Magnolia biondii HOM05D005309 ORTHO05D006648 2.7e-09 66.2 77 51.9
Mapoly0025s0011 Marchantia polymorpha HOM05D005309 ORTHO05D006648 1.3e-08 63.9 72 40.3
ATR0585G013 Amborella trichopoda HOM05D005309 ORTHO05D006648 1.2e-06 57.4 42 57.1
Lsat_1_v5_gn_4_60740 Lactuca sativa HOM05D005309 ORTHO05D006648 2.1e-06 56.6 93 37.6
ATR0585G094 Amborella trichopoda HOM05D005309 ORTHO05D006648 6.2e-06 55.1 32 78.1
Duzib138G1377 Durio zibethinus HOM05D005309 ORTHO05D006648 6.2e-06 55.1 37 62.2


User provided reference genes

Program Settings