Gene: AT1G06560

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G06560
  • Transcript Identifier AT1G06560.1
  • Gene Type Coding gene
  • Location Chr1 : 2007660-2011824 : positive

Gene Family Information

  • ID HOM05D005309
  • #Genes/#Species 143/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G06560.1
  • uniprot Q84MA1

Descriptions

  • Description NOL1/NOP2/sun family protein
  • Computational description NOL1/NOP2/sun family protein; FUNCTIONS IN: methyltransferase activity, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26600.1); Has 13569 Blast hits to 8411 proteins in 2331 species: Archae - 604; Bacteria - 9970; Metazoa - 826; Fungi - 418; Plants - 360; Viruses - 0; Other Eukaryotes - 1391 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001510
IEA
GOA DatabaseRNA methylation
GO:0001510
IBA
Gene OntologyRNA methylation1
GO:0001510
IEA
InterProRNA methylation
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0042254
IEA
GOA Databaseribosome biogenesis
GO:0032259
IEA
GOA Databasemethylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0008168
IEA
GOA Databasemethyltransferase activity
GO:0008168
IEA
InterPromethyltransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005730
IEA
GOA Databasenucleolus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002478 PUA domain
IPR029063 S-adenosyl-L-methionine-dependent methyltransferase
IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type
IPR015947 PUA-like superfamily
IPR023267 RNA (C5-cytosine) methyltransferase
IPR036974 PUA domain superfamily
Mapman id Description
35.1 not assigned.annotated