Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 0.0e+00 1219.1 611 100.0
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 0.0e+00 1175.6 612 96.1
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 0.0e+00 1089.3 611 88.1
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 0.0e+00 1081.2 611 87.4
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 0.0e+00 1080.1 611 87.7
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 5.6e-307 1057.0 611 85.8
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 3.1e-297 1024.6 603 85.2
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 2.6e-256 888.6 612 71.2
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 2.5e-254 882.1 612 71.6
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 2.1e-253 879.0 613 71.9
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 2.3e-252 875.5 614 71.7
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 8.7e-252 873.6 595 73.6
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 8.7e-252 873.6 614 70.2
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 1.1e-251 873.2 612 72.4
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 5.3e-249 864.4 624 69.2
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 5.3e-249 864.4 613 70.3
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 6.9e-249 864.0 611 70.5
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.2e-248 863.2 612 71.1
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 7.7e-248 860.5 618 69.7
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.3e-247 859.8 615 70.1
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 6.5e-247 857.4 614 69.9
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 6.5e-247 857.4 617 70.2
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 8.5e-247 857.1 610 70.5
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 1.1e-246 856.7 628 69.1
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.4e-246 856.3 616 69.8
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 7.2e-246 854.0 613 68.8
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.2e-245 853.2 617 70.0
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 1.2e-245 853.2 611 69.4
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 4.7e-245 851.3 613 68.7
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 4.7e-245 851.3 619 71.1
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 1.4e-244 849.7 620 69.4
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 6.7e-244 847.4 614 69.2
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 6.7e-244 847.4 614 69.1
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 4.4e-243 844.7 617 70.3
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 1.7e-242 842.8 612 67.8
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 2.8e-242 842.0 616 67.9
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 4.8e-242 841.3 614 68.1
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 4.8e-242 841.3 689 62.8
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 6.3e-242 840.9 618 68.8
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.1e-241 840.1 617 68.1
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 2.4e-241 839.0 614 67.9
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 9.1e-241 837.0 612 67.5
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 9.1e-241 837.0 611 68.9
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 1.5e-240 836.3 620 67.7
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 3.4e-240 835.1 619 67.4
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 5.9e-240 834.3 612 68.8
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 5.0e-239 831.2 612 68.1
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 5.0e-239 831.2 612 66.7
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 8.5e-239 830.5 615 67.5
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 8.5e-239 830.5 615 67.5
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 8.5e-239 830.5 614 67.6
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 2.5e-238 828.9 613 66.7
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 2.5e-238 828.9 613 66.6
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 2.5e-238 828.9 614 67.3
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 5.5e-238 827.8 613 66.4
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 5.5e-238 827.8 613 66.7
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 2.1e-237 825.9 611 67.3
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 3.6e-237 825.1 613 66.4
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 6.1e-237 824.3 611 66.9
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 8.8e-236 820.5 613 66.4
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 2.6e-235 818.9 613 67.5
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 4.4e-235 818.1 612 66.2
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 1.3e-234 816.6 613 65.6
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 2.2e-234 815.8 614 67.8
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 2.8e-234 815.5 618 67.2
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 3.7e-234 815.1 615 65.7
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 8.2e-234 813.9 614 67.8
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 3.5e-232 808.5 613 64.9
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 5.9e-232 807.7 613 64.9
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.7e-231 806.2 598 69.1
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 5.0e-231 804.7 617 66.5
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 9.4e-230 800.4 614 66.1
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 3.6e-229 798.5 616 65.4
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 2.3e-228 795.8 604 66.7
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 6.7e-228 794.3 610 66.1
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 2.4e-225 785.8 611 65.5
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 3.1e-225 785.4 569 68.9
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 2.2e-223 779.2 567 69.7
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 2.2e-223 779.2 597 66.0
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 2.1e-221 772.7 745 56.4
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 2.7e-221 772.3 617 63.9
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 6.8e-220 767.7 620 63.1
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 9.8e-219 763.8 615 62.9
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 2.4e-217 759.2 546 69.6
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 8.6e-215 750.7 574 66.7
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 1.9e-214 749.6 548 68.1
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 5.2e-204 714.9 614 58.3
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.3e-194 683.7 623 58.9
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 1.2e-192 677.2 613 59.1
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 1.7e-191 673.3 624 55.6
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 2.6e-187 659.4 500 67.8
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 3.3e-174 615.9 678 49.1
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.1e-172 610.9 685 51.1
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.2e-171 607.4 526 61.4
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.4e-161 573.2 491 61.9
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 5.8e-155 552.0 503 57.1
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 5.8e-147 525.4 362 72.4
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 1.3e-146 524.2 386 66.3
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 1.5e-142 510.8 383 66.8
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 2.1e-128 463.8 360 65.8
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 4.7e-120 436.0 359 62.7
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 6.1e-120 435.6 437 54.9
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 3.3e-118 429.9 321 66.4
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 9.4e-113 411.8 232 89.2
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.4e-111 407.9 257 79.0
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-110 404.8 274 73.7
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 3.1e-108 396.7 257 76.3
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 5.3e-108 396.0 644 37.4
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 6.3e-101 372.5 256 71.5
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 1.2e-96 358.2 244 70.1
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 3.4e-86 323.6 628 35.8
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 6.6e-74 282.7 179 73.7
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 2.1e-59 234.6 219 57.1
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 7.3e-57 226.1 220 55.0
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 6.2e-56 223.0 169 68.6
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 1.5e-46 191.8 161 59.0
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 7.6e-46 189.5 111 82.9
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-45 188.3 111 83.8
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 2.9e-45 187.6 110 82.7
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-43 182.2 111 80.2
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 1.8e-42 178.3 107 79.4
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 5.6e-41 173.3 109 75.2
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 1.2e-35 155.6 104 70.2
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 6.7e-34 149.8 122 65.6
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 8.7e-34 149.4 99 74.7
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 2.6e-30 137.9 82 74.4
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 2.6e-30 137.9 104 63.5
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 5.5e-28 130.2 85 72.9
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 8.7e-26 122.9 333 30.0
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 3.3e-25 120.9 97 55.7
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 3.3e-25 120.9 97 55.7
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 5.7e-25 120.2 69 85.5
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 2.8e-24 117.9 134 49.3
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 4.8e-24 117.1 107 56.1
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 1.5e-22 112.1 71 67.6
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-20 105.1 68 75.0
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 2.5e-20 104.8 145 41.4
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 6.1e-19 100.1 55 74.5
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.1e-17 95.9 83 53.0
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 7.7e-14 83.2 182 33.0
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 1.3e-13 82.4 55 65.5
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-11 75.9 41 82.9
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 6.1e-11 73.6 40 82.5
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 1.8e-10 72.0 182 29.1
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.8e-10 72.0 50 70.0
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 5.1e-10 70.5 41 80.5
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 4.4e-09 67.4 185 29.2
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 1.1e-07 62.8 41 68.3
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.8e-07 62.0 45 64.4
RcHm_v2.0_Chr6g0249261 Rosa chinensis HOM05D005117 ORTHO05D005956 5.9e-06 57.0 46 58.7


User provided reference genes

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