Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.3e-191 672.9 341 100.0
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.3e-175 619.8 369 86.4
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 5.3e-174 614.4 342 90.4
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 1.5e-168 596.3 362 85.4
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 7.5e-168 594.0 362 85.1
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 9.1e-166 587.0 377 81.4
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 4.1e-150 535.0 342 77.8
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 1.6e-149 533.1 342 82.5
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 2.7e-149 532.3 362 75.4
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 2.7e-149 532.3 346 76.3
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 1.3e-148 530.0 362 74.0
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 1.5e-147 526.6 362 73.8
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 4.7e-146 521.5 361 73.1
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 1.0e-145 520.4 341 77.7
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 1.4e-145 520.0 333 77.8
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 1.8e-145 519.6 361 72.6
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 5.2e-145 518.1 361 72.6
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 2.0e-144 516.2 343 76.1
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 7.5e-144 514.2 361 72.9
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 7.5e-144 514.2 360 73.1
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 7.5e-144 514.2 380 70.5
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.7e-143 513.1 356 73.3
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 2.9e-143 512.3 361 72.6
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.9e-143 511.5 342 75.1
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.9e-143 511.5 342 75.1
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 6.4e-143 511.1 361 71.7
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 6.4e-143 511.1 361 72.6
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.4e-142 510.0 361 71.7
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 1.9e-142 509.6 361 72.3
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 2.4e-142 509.2 361 72.0
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 5.4e-142 508.1 361 71.2
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 7.0e-142 507.7 362 71.8
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 9.2e-142 507.3 361 71.5
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 9.2e-142 507.3 361 71.7
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 1.2e-141 506.9 361 70.6
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 3.5e-141 505.4 349 71.9
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 6.0e-141 504.6 361 71.2
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 6.0e-141 504.6 361 70.9
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 1.0e-140 503.8 341 73.6
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 1.7e-140 503.1 346 73.1
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 1.7e-140 503.1 360 70.8
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 2.3e-140 502.7 362 70.7
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.9e-140 501.9 342 74.0
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 5.0e-140 501.5 361 70.6
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 8.6e-140 500.7 361 71.2
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 1.1e-139 500.4 361 70.6
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.1e-139 500.4 361 70.1
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 3.3e-139 498.8 361 71.5
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 9.5e-139 497.3 361 69.0
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.2e-138 496.9 361 70.1
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 1.6e-138 496.5 361 69.8
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 3.6e-138 495.4 361 69.5
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 4.7e-138 495.0 342 73.1
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 6.2e-138 494.6 350 71.4
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 1.1e-137 493.8 361 69.0
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 1.1e-137 493.8 365 69.6
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 1.1e-137 493.8 361 69.0
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.4e-137 493.4 382 67.5
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.8e-137 493.0 359 69.9
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 4.0e-137 491.9 361 69.8
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 5.2e-137 491.5 390 65.4
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 8.9e-137 490.7 361 68.1
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 1.5e-136 490.0 360 68.6
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 1.5e-136 490.0 341 70.4
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.0e-136 489.6 361 68.7
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 2.6e-136 489.2 361 69.0
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 3.4e-136 488.8 342 71.6
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 4.4e-136 488.4 390 65.4
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 9.8e-136 487.3 361 68.7
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 2.2e-135 486.1 361 68.1
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 2.2e-135 486.1 341 71.3
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 2.9e-135 485.7 361 68.4
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 3.7e-135 485.3 359 68.5
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 4.9e-135 485.0 341 68.9
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 6.4e-135 484.6 361 68.7
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 8.3e-135 484.2 341 72.1
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.4e-134 483.4 382 66.2
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 2.4e-134 482.6 341 68.6
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 5.4e-134 481.5 361 67.9
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 7.1e-134 481.1 406 62.1
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 7.1e-134 481.1 370 65.7
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 9.2e-134 480.7 361 66.8
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 2.1e-133 479.6 360 66.4
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 2.1e-133 479.6 360 66.4
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 2.1e-133 479.6 379 66.5
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 2.7e-133 479.2 362 66.3
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 4.6e-133 478.4 365 65.8
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 7.8e-133 477.6 393 63.6
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 1.3e-132 476.9 358 67.6
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 1.3e-132 476.9 359 66.3
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 1.3e-132 476.9 359 66.3
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 3.9e-132 475.3 361 64.0
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 5.1e-132 474.9 358 65.9
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 5.1e-132 474.9 361 66.8
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.5e-131 473.4 341 70.1
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.9e-131 473.0 375 65.6
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 2.5e-131 472.6 361 65.4
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 4.3e-131 471.9 361 64.0
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 9.5e-131 470.7 361 64.3
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.6e-130 469.9 361 66.8
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 3.6e-130 468.8 364 64.8
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.1e-129 467.2 340 70.9
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.1e-129 465.7 336 71.4
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.5e-128 463.4 361 64.5
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 2.6e-128 462.6 341 68.6
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 2.6e-128 462.6 361 65.7
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 3.4e-128 462.2 361 62.6
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 1.9e-126 456.4 361 62.6
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.4e-126 456.1 361 64.5
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 4.1e-126 455.3 373 64.1
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 4.1e-126 455.3 347 67.4
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 5.4e-126 454.9 343 64.7
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 2.1e-125 453.0 389 59.4
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 2.7e-125 452.6 361 62.0
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 2.7e-125 452.6 341 68.6
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 2.7e-125 452.6 361 63.7
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 7.8e-125 451.1 361 62.0
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 1.5e-123 446.8 360 61.4
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 7.3e-123 444.5 361 65.9
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 2.0e-120 436.4 394 60.9
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 6.4e-119 431.4 296 71.6
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 8.4e-119 431.0 491 50.9
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 9.9e-112 407.5 324 65.1
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.2e-111 406.4 361 57.1
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 3.9e-108 395.6 288 69.1
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.3e-103 380.6 303 64.0
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 1.2e-101 374.0 358 53.9
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 3.0e-100 369.4 356 52.2
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 1.9e-99 366.7 251 71.7
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.9e-99 366.7 359 53.8
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 8.2e-90 334.7 215 75.8
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 3.4e-88 329.3 217 74.7
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 3.6e-85 319.3 210 74.8
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 2.8e-82 309.7 371 49.6
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 3.4e-80 302.8 368 47.6
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 7.2e-70 268.5 210 65.7
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 4.7e-69 265.8 389 41.1
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 4.7e-61 239.2 271 52.0
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 1.5e-54 217.6 155 71.6
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 4.4e-51 206.1 387 37.2
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 5.4e-49 199.1 339 36.9
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 1.2e-48 198.0 168 61.3
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 4.0e-44 183.0 130 71.5
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.2e-43 181.4 273 43.2
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 4.3e-38 162.9 126 61.1
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 5.6e-38 162.5 112 67.9
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.6e-37 161.0 107 72.9
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 1.4e-36 157.9 107 74.8
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 4.0e-36 156.4 125 62.4
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 8.9e-36 155.2 107 73.8
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 4.9e-34 149.4 112 68.8
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 5.4e-33 146.0 85 83.5
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 9.2e-33 145.2 164 48.2
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.6e-32 144.4 112 67.0
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 2.7e-32 143.7 107 68.2
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 2.5e-30 137.1 107 61.7
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 5.6e-30 136.0 125 52.0
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.6e-29 134.4 80 82.5
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 4.7e-29 132.9 95 66.3
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.0e-27 127.5 76 80.3
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 4.6e-24 116.3 75 76.0
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 3.6e-21 106.7 83 61.4
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 6.2e-21 105.9 62 80.6
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 6.2e-21 105.9 63 76.2
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 2.9e-18 97.1 60 83.3
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 2.4e-17 94.0 53 83.0
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 3.3e-14 83.6 64 62.5
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.2e-13 81.6 53 77.4
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 1.4e-12 78.2 73 57.5
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 1.8e-12 77.8 46 80.4
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 3.4e-11 73.6 51 64.7
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 7.6e-11 72.4 163 36.2
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 6.0e-08 62.8 43 62.8
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.3e-07 60.8 110 36.4


User provided reference genes

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