Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001339g0050 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 7078.8 3623 100.0
Sopen02g034050 Solanum pennellii HOM05D003926 ORTHO05D005273 0.0e+00 6012.2 4481 73.0
Solyc02g089260.4 Solanum lycopersicum HOM05D003926 ORTHO05D005273 0.0e+00 5991.4 4481 72.8
CAN.G497.55 Capsicum annuum HOM05D003926 ORTHO05D005273 0.0e+00 5924.7 4405 73.0
Nitab4.5_0009887g0010 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 5034.2 3609 76.3
CSS0002647 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 4568.5 4488 56.3
CSS0025257 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 4565.0 4488 56.3
Actinidia18083 Actinidia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 4534.9 4487 55.9
Lj4C124T8 Lonicera japonica HOM05D003926 ORTHO05D005273 0.0e+00 4533.0 4514 56.4
Peaxi162Scf00020g02342 Petunia axillaris HOM05D003926 ORTHO05D005273 0.0e+00 4484.5 3341 73.1
Cc07_g04520 Coffea canephora HOM05D003926 ORTHO05D005273 0.0e+00 4474.1 4492 55.8
Cfa007698 Carpinus fangiana HOM05D003926 ORTHO05D005273 0.0e+00 4385.9 4487 54.5
QL02p065183 Quercus lobata HOM05D003926 ORTHO05D005273 0.0e+00 4372.8 4524 54.2
Atru.chr8.620 Acer truncatum HOM05D003926 ORTHO05D005273 0.0e+00 4357.4 4476 54.4
Prupe.3G248400 Prunus persica HOM05D003926 ORTHO05D005273 0.0e+00 4353.9 4466 54.3
Dinv34905 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 4352.7 4314 56.2
MSTRG.23855 Avicennia marina HOM05D003926 ORTHO05D005273 0.0e+00 4348.1 4480 54.5
Rhsim10G0059600 Rhododendron simsii HOM05D003926 ORTHO05D005273 0.0e+00 4335.4 4424 54.8
CiPaw.03G082600 Carya illinoinensis HOM05D003926 ORTHO05D005273 0.0e+00 4326.2 4364 54.7
MD09G1075600 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 4312.7 4467 53.8
TAR374G0863 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 4304.6 4495 53.5
Haze_14378 Corylus avellana HOM05D003926 ORTHO05D005273 0.0e+00 4300.4 4355 54.8
DCAR_011007 Daucus carota HOM05D003926 ORTHO05D005273 0.0e+00 4287.6 4488 53.5
Ciclev10010885m.g Citrus clementina HOM05D003926 ORTHO05D005273 0.0e+00 4286.1 4482 53.8
RcHm_v2.0_Chr2g0164791 Rosa chinensis HOM05D003926 ORTHO05D005273 0.0e+00 4285.7 4488 53.8
Thecc.04G107500 Theobroma cacao HOM05D003926 ORTHO05D005273 0.0e+00 4274.2 4467 53.9
MD17G1066300 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 4272.6 4468 53.7
Manes.02G059900 Manihot esculenta HOM05D003926 ORTHO05D005273 0.0e+00 4272.6 4480 53.2
ECA232G4780 Erigeron canadensis HOM05D003926 ORTHO05D005273 0.0e+00 4267.2 4475 53.3
Potri.017G101100 Populus trichocarpa HOM05D003926 ORTHO05D005273 0.0e+00 4264.1 4480 53.7
CANSAT64G0948 Cannabis sativa HOM05D003926 ORTHO05D005273 0.0e+00 4250.3 4493 53.7
HanXRQChr15g0464821 Helianthus annuus HOM05D003926 ORTHO05D005273 0.0e+00 4244.5 4492 53.2
Sabra17G0086900 Salix brachista HOM05D003926 ORTHO05D005273 0.0e+00 4232.9 4480 53.4
FvH4_6g46320 Fragaria vesca HOM05D003926 ORTHO05D005273 0.0e+00 4225.6 4489 53.2
SGA_v2.0_scaffold52G19072 Striga asiatica HOM05D003926 ORTHO05D005273 0.0e+00 4214.1 4489 53.0
Gorai.001G206500 Gossypium raimondii HOM05D003926 ORTHO05D005273 0.0e+00 4201.4 4465 52.9
Duzib133G0169 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 4166.7 4465 52.9
TAR622G1093 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 4165.9 4372 53.0
Lsat_1_v5_gn_4_173381 Lactuca sativa HOM05D003926 ORTHO05D005273 0.0e+00 4160.9 4499 53.1
arahy.Tifrunner.gnm1.ann1.FDTJ9Q Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 4147.0 4473 52.5
Nn3g17538 Nelumbo nucifera HOM05D003926 ORTHO05D005273 0.0e+00 4143.6 4499 51.9
arahy.Tifrunner.gnm1.ann1.IQIT5J Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 4135.9 4467 52.4
Phvul.008G025700 Phaseolus vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 4127.8 4491 51.8
Lj1g0024205 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 4124.7 4479 52.3
TWI32G0285 Tripterygium wilfordii HOM05D003926 ORTHO05D005273 0.0e+00 4115.8 4478 52.2
Glyma.18G275200 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 4097.0 4491 51.5
MELO3C022053.2 Cucumis melo HOM05D003926 ORTHO05D005273 0.0e+00 4095.4 4487 51.3
TPR.G23405 Trifolium pratense HOM05D003926 ORTHO05D005273 0.0e+00 4075.0 4486 51.5
Ca_06914_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 4065.8 4478 51.5
Ca_06916_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 4065.8 4478 51.5
CsaV3_5G038720 Cucumis sativus L. HOM05D003926 ORTHO05D005273 0.0e+00 4065.0 4476 51.2
MBI15_g05000_MAGBIO Magnolia biondii HOM05D003926 ORTHO05D005273 0.0e+00 4061.9 4486 51.4
Medtr7g017100 Medicago truncatula HOM05D003926 ORTHO05D005273 0.0e+00 4061.5 4485 51.3
ClCG11G004990 Citrullus lanatus HOM05D003926 ORTHO05D005273 0.0e+00 4061.1 4529 50.8
Hund16238 Selenicereus undatus HOM05D003926 ORTHO05D005273 0.0e+00 4048.8 4485 51.4
AUR62009475 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 4044.2 4488 51.2
PGR004G0818 Punica granatum HOM05D003926 ORTHO05D005273 0.0e+00 4035.7 4484 50.9
Aqoxy3G03752 Aquilegia oxysepala HOM05D003926 ORTHO05D005273 0.0e+00 4018.8 4485 50.9
AUR62023153 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 4014.9 4512 51.0
PSO063G5950 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 3990.7 4497 50.5
Lalb_Chr21g0318281 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 3990.3 4493 50.7
PSO782G5674 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 3990.3 4497 50.5
Duzib211G0130 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 3983.3 4464 50.9
Sed0020046 Sechium edule HOM05D003926 ORTHO05D005273 0.0e+00 3966.0 4475 50.4
Sc14g0004890 Simmondsia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 3952.9 4494 50.8
EL10Ac2g04434 Beta vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 3952.5 4497 50.7
Psat3g203080 Pisum sativum HOM05D003926 ORTHO05D005273 0.0e+00 3884.3 4481 49.9
Ah.16g101010 Amaranthus hybridus HOM05D003926 ORTHO05D005273 0.0e+00 3868.5 4483 49.9
THA.LOC104802985 Tarenaya hassleriana HOM05D003926 ORTHO05D005273 0.0e+00 3830.8 4464 49.6
Thhalv10019869m.g Eutrema salsugineum HOM05D003926 ORTHO05D005273 0.0e+00 3812.7 4466 49.1
Sp3g01330 Schrenkiella parvula HOM05D003926 ORTHO05D005273 0.0e+00 3798.1 4467 48.7
AL3G11530 Arabidopsis lyrata HOM05D003926 ORTHO05D005273 0.0e+00 3794.2 4464 48.9
Aa31LG5G12790 Aethionema arabicum HOM05D003926 ORTHO05D005273 0.0e+00 3791.5 4471 48.8
AT3G02260 Arabidopsis thaliana HOM05D003926 ORTHO05D005273 0.0e+00 3785.7 4469 48.9
CARHR076230 Cardamine hirsuta HOM05D003926 ORTHO05D005273 0.0e+00 3764.9 4467 48.5
C09p75640 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 3733.0 4469 48.3
BolC5t35094H Brassica oleracea HOM05D003926 ORTHO05D005273 0.0e+00 3726.0 4465 48.3
BraA05t23147Z Brassica rapa HOM05D003926 ORTHO05D005273 0.0e+00 3717.9 4495 48.0
Carub.0003s0138 Capsella rubella HOM05D003926 ORTHO05D005273 0.0e+00 3692.9 4270 49.7
Lalb_Chr06g0174881 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 3663.2 4490 48.2
ATR0691G267 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 3646.7 4439 47.8
COL.COLO4_10659 Corchorus olitorius HOM05D003926 ORTHO05D005273 0.0e+00 3624.3 3522 57.4
GSVIVG01036538001 Vitis vinifera HOM05D003926 ORTHO05D005273 0.0e+00 3606.2 4378 48.7
ATR1101G059 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 3605.8 4438 47.6
Migut.H00584 Erythranthe guttata HOM05D003926 ORTHO05D005273 0.0e+00 3524.6 3550 54.4
Os09g0247700 Oryza sativa ssp. japonica HOM05D003926 ORTHO05D005273 0.0e+00 3381.7 4426 45.0
Zm00001eb308350 Zea mays HOM05D003926 ORTHO05D005273 0.0e+00 3213.3 4491 43.5
SEGI_07483 Sequoiadendron giganteum HOM05D003926 ORTHO05D005273 0.0e+00 3209.5 4544 43.2
Mapoly0031s0115 Marchantia polymorpha HOM05D003926 ORTHO05D005273 0.0e+00 2639.0 4614 37.8
vmacro05611 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 0.0e+00 2613.6 2560 55.2
CDE01G0304 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 0.0e+00 2553.9 3355 45.1
Gohir.A07G179100 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 2514.2 2830 50.0
Lj1g0000156 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 2507.2 2579 55.0
Pp3c11_22340 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 2488.4 4610 37.3
Glyma.08G252600 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 2442.5 2445 54.0
Pp3c7_7030 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 2432.5 4605 36.9
Dinv33869 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 2361.3 2511 52.9
SMO361G0659 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 2355.5 4170 37.9
A05p45150 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 2097.8 2470 47.8
Gohir.A07G178700 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 1931.4 1656 63.5
Gohir.D07G186000 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 1921.0 1656 63.2
vmacro05610 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 0.0e+00 1908.6 1653 62.9
Glyma.08G252650 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 1896.7 1658 62.4
BcaC05g30341 Brassica carinata HOM05D003926 ORTHO05D005273 0.0e+00 1887.8 2410 46.3
Eucgr.I02068 Eucalyptus grandis HOM05D003926 ORTHO05D005273 0.0e+00 1837.8 1655 60.4
arahy.Tifrunner.gnm1.ann1.DT5ZWB Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 1827.0 2066 49.7
Dinv33870 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 1785.8 1563 62.4
PGSC0003DMG401001381 Solanum tuberosum HOM05D003926 ORTHO05D005273 0.0e+00 1682.2 1241 73.2
Cpa.g.sc14.238 Carica papaya HOM05D003926 ORTHO05D005273 0.0e+00 1664.4 1437 63.3
SHI25820 Sapria himalayana HOM05D003926 ORTHO05D005273 0.0e+00 1637.1 2261 43.0
HPP92_020588 Vanilla planifolia HOM05D003926 ORTHO05D005273 0.0e+00 1628.6 2364 41.2
Gohir.A07G178901 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 1586.6 1915 46.7
HPP92_020589 Vanilla planifolia HOM05D003926 ORTHO05D005273 0.0e+00 1543.1 1529 56.6
CBR_g24086 Chara braunii HOM05D003926 ORTHO05D000048 0.0e+00 1491.9 4540 29.5
SHI25822 Sapria himalayana HOM05D003926 ORTHO05D005273 0.0e+00 1481.1 1634 51.5
BcaC05g30340 Brassica carinata HOM05D003926 ORTHO05D005273 0.0e+00 1476.5 1412 58.3
A05p45140 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 1346.3 1305 57.8
Rhsim05G0129500 Rhododendron simsii HOM05D003926 ORTHO05D005273 0.0e+00 1313.5 1511 49.7
AagrBONN_evm.TU.Sc2ySwM_344.3761 Anthoceros agrestis HOM05D003926 ORTHO05D005273 0.0e+00 1267.7 2529 35.5
Peaxi162Scf00020g02344 Petunia axillaris HOM05D003926 ORTHO05D005273 0.0e+00 1233.4 889 74.1
FAN09G1503 Fragaria x ananassa HOM05D003926 ORTHO05D005273 1.5e-279 968.4 1433 40.2
Psat4g186360 Pisum sativum HOM05D003926 ORTHO05D005273 3.3e-245 854.4 694 64.4
Psat4g179640 Pisum sativum HOM05D003926 ORTHO05D005273 1.9e-221 775.4 643 63.5
Sabra16G0314500 Salix brachista HOM05D004145 ORTHO05D004879 6.7e-158 564.3 596 57.2
Atru.chr12.1304 Acer truncatum HOM05D003926 ORTHO05D005273 7.2e-152 544.3 345 82.6
CDE01G0480 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 4.5e-138 498.4 408 68.1
SMO361G0392 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 1.0e-137 497.3 675 48.1
SMO199G0087 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 8.0e-127 461.1 667 46.2
vmacro11260 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 2.1e-95 356.7 199 85.9
Sabra16G0314400 Salix brachista HOM05D004145 ORTHO05D004879 1.3e-92 347.4 583 42.2
Actinidia36271 Actinidia chinensis HOM05D003926 ORTHO05D005273 3.2e-91 342.8 217 78.3
MCO11G572 Micromonas commoda HOM05D003926 ORTHO05D005273 1.5e-88 334.0 962 27.9
Rhsim05G0129300 Rhododendron simsii HOM05D003926 ORTHO05D005273 4.0e-78 299.3 217 71.9
Oeu047260.2 Olea europaea HOM05D003926 ORTHO05D005273 1.1e-54 221.5 147 79.6
Psat4g170760 Pisum sativum HOM05D003926 ORTHO05D005273 5.3e-38 166.0 108 74.1
CDE01G0511 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 1.2e-37 164.9 363 32.0
Rhsim10G0100000 Rhododendron simsii HOM05D003926 ORTHO05D005273 6.1e-34 152.5 133 63.2
CAN.G8.6 Capsicum annuum HOM05D003926 ORTHO05D010611 1.4e-30 141.4 207 44.4
ATR0620G072 Amborella trichopoda HOM05D003059 ORTHO05D003414 7.7e-29 135.6 106 71.7
A05p29520 Brassica napus HOM05D003926 ORTHO05D005273 2.2e-28 134.0 384 29.4
ATR0332G115 Amborella trichopoda HOM05D003926 ORTHO05D005273 1.0e-25 125.2 115 67.0
A05p29570 Brassica napus HOM05D003926 ORTHO05D010327 1.2e-21 111.7 322 29.5
Eucgr.I02066 Eucalyptus grandis HOM05D003926 ORTHO05D018213 8.0e-18 99.0 145 44.1
BcaC05g29898 Brassica carinata HOM05D003926 ORTHO05D005273 1.4e-17 98.2 120 51.7
Psat7g201760 Pisum sativum HOM05D003926 ORTHO05D005273 2.3e-17 97.4 106 51.9
VMungo1383G2275 Vigna mungo HOM05D003926 ORTHO05D005273 7.5e-16 92.4 110 51.8
Psat7g201680 Pisum sativum HOM05D003926 ORTHO05D005273 2.8e-15 90.5 105 48.6
Cpa.g.sc3603.1 Carica papaya HOM05D003926 ORTHO05D018213 7.0e-14 85.9 104 47.1
Actinidia14026 Actinidia chinensis HOM05D003926 ORTHO05D018213 1.2e-13 85.1 120 45.8
Actinidia36270 Actinidia chinensis HOM05D003926 ORTHO05D038129 1.6e-13 84.7 283 28.3
Sp7g04320 Schrenkiella parvula HOM05D003926 ORTHO05D005273 3.9e-12 80.1 115 38.3
QL10p058201 Quercus lobata HOM05D001813 ORTHO05D008124 8.6e-12 79.0 125 44.0
CDE01G0142 Ceratophyllum demersum HOM05D003926 ORTHO05D018213 2.5e-11 77.4 139 38.1
Nn1g06304 Nelumbo nucifera HOM05D003926 ORTHO05D018213 4.3e-11 76.6 121 42.1
Dinv36991 Davidia involucrata HOM05D003926 ORTHO05D038129 6.1e-10 72.8 56 62.5
Psat3g160120 Pisum sativum HOM05D003926 ORTHO05D005273 5.2e-09 69.7 60 53.3
Psat4g018040 Pisum sativum HOM05D003926 ORTHO05D005273 1.2e-08 68.6 113 39.8
COL.COLO4_10661 Corchorus olitorius HOM05D003926 ORTHO05D018213 3.7e-07 63.5 105 39.0
A10p01720 Brassica napus HOM05D003926 ORTHO05D005273 9.2e-06 58.9 34 79.4


User provided reference genes

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