Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.6e-230 802.4 404 100.0
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 5.7e-191 671.0 407 86.2
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 8.2e-190 667.2 434 79.0
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 2.4e-189 665.6 434 78.8
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.2e-188 663.3 434 78.8
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 2.2e-187 659.1 436 79.1
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 1.0e-184 650.2 434 77.4
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 4.6e-140 501.9 415 62.4
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 5.8e-135 485.0 392 63.0
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 1.9e-133 479.9 393 61.3
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.4e-133 479.6 408 61.8
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 4.1e-133 478.8 388 63.1
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 2.7e-132 476.1 393 62.1
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 8.6e-131 471.1 418 58.1
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 3.3e-130 469.2 395 61.5
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 5.6e-130 468.4 415 58.8
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 4.7e-129 465.3 391 60.6
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.4e-128 463.8 394 61.4
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 1.4e-128 463.8 397 60.2
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 1.8e-128 463.4 391 60.1
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 4.0e-128 462.2 415 58.3
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 1.2e-127 460.7 397 60.5
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 4.4e-127 458.8 399 59.1
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 1.3e-126 457.2 415 57.6
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.9e-125 453.4 385 59.5
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 7.1e-125 451.4 393 57.8
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 9.3e-125 451.1 398 58.0
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.1e-122 444.1 397 57.9
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 1.5e-122 443.7 411 57.4
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 3.6e-121 439.1 393 56.5
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 4.8e-121 438.7 393 56.0
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 5.3e-120 435.3 399 56.9
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 1.5e-119 433.7 376 58.8
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 1.7e-118 430.3 387 57.1
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 4.2e-117 425.6 385 55.3
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 3.5e-116 422.5 404 56.7
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 7.9e-116 421.4 399 55.4
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 1.3e-115 420.6 434 52.8
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 3.9e-115 419.1 388 54.4
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 5.1e-115 418.7 430 52.6
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 1.1e-114 417.5 395 55.7
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 1.5e-114 417.2 413 54.0
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 5.6e-114 415.2 383 54.6
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 5.6e-114 415.2 402 55.5
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 9.6e-114 414.5 379 57.5
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 7.6e-111 404.8 392 53.6
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 6.4e-110 401.7 430 52.3
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 3.2e-109 399.4 418 51.2
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 5.5e-109 398.7 429 50.8
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 7.1e-109 398.3 396 52.5
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 9.3e-109 397.9 400 53.8
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 4.6e-108 395.6 397 53.7
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 2.5e-106 389.8 362 55.5
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 2.5e-106 389.8 388 51.8
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 4.3e-106 389.0 387 51.9
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 8.2e-105 384.8 396 53.8
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 8.2e-105 384.8 416 49.8
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 1.4e-104 384.0 392 51.0
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 4.5e-103 379.0 397 50.6
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 7.6e-103 378.3 392 53.3
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 2.9e-102 376.3 388 53.6
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 3.8e-102 375.9 393 50.9
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 1.9e-101 373.6 392 52.6
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 1.2e-100 370.9 389 47.8
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.7e-100 369.8 396 50.3
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.7e-100 369.8 396 50.3
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 4.6e-100 369.0 395 50.4
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 6.7e-99 365.2 395 49.6
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.5e-98 364.0 374 53.5
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 1.9e-98 363.6 338 55.0
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.9e-98 363.6 397 49.9
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 3.3e-98 362.8 391 52.2
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 3.3e-98 362.8 401 47.6
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 9.7e-98 361.3 374 52.4
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.6e-97 360.5 394 51.0
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 2.2e-97 360.1 391 51.9
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 2.2e-97 360.1 406 50.2
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 1.1e-96 357.8 394 49.0
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.8e-96 357.1 414 50.0
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 2.4e-96 356.7 357 51.5
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 5.3e-96 355.5 366 52.7
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 9.0e-96 354.8 421 49.9
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 1.2e-95 354.4 418 47.6
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 1.5e-95 354.0 392 48.0
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 2.6e-95 353.2 414 47.8
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 1.9e-93 347.1 351 53.0
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 3.3e-90 336.3 394 50.0
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 7.4e-90 335.1 396 49.0
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 7.4e-90 335.1 395 47.8
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.1e-88 331.3 392 48.7
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.8e-88 330.5 394 48.5
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 7.7e-87 325.1 403 45.9
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 7.7e-87 325.1 418 43.3
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 2.9e-86 323.2 341 51.6
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 8.5e-86 321.6 404 45.0
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 1.1e-85 321.2 381 48.6
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 3.2e-85 319.7 391 46.0
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 7.2e-85 318.5 391 46.0
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 1.8e-83 313.9 421 46.1
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 2.3e-83 313.5 373 45.6
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 3.0e-83 313.2 399 44.1
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 3.9e-83 312.8 432 44.2
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 5.1e-83 312.4 403 45.4
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 6.7e-83 312.0 391 46.3
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 8.8e-83 311.6 387 46.8
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 8.8e-83 311.6 403 44.7
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.5e-82 310.8 410 45.9
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 2.6e-82 310.1 385 46.8
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 7.4e-82 308.5 404 42.8
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 7.4e-82 308.5 396 46.0
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 2.8e-81 306.6 416 45.0
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 4.8e-81 305.8 416 44.7
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 1.8e-80 303.9 392 44.4
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 4.1e-80 302.8 386 44.3
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 4.1e-80 302.8 381 44.9
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 5.9e-79 298.9 371 43.7
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 5.5e-77 292.4 387 43.7
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 9.4e-77 291.6 391 44.0
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 1.2e-76 291.2 386 42.7
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 1.2e-76 291.2 391 44.0
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 1.2e-76 291.2 383 44.9
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 1.2e-76 291.2 391 44.0
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 2.1e-76 290.4 354 45.5
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 8.0e-76 288.5 382 42.4
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.0e-75 288.1 391 43.0
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 5.2e-75 285.8 390 44.4
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 6.7e-75 285.4 421 40.4
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 8.8e-75 285.0 394 41.6
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.3e-74 283.1 391 41.4
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 7.4e-74 282.0 347 47.8
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 7.4e-74 282.0 381 42.3
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 7.4e-74 282.0 311 50.2
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 2.8e-73 280.0 381 42.0
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 3.7e-73 279.6 379 44.1
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 8.2e-73 278.5 393 42.2
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.4e-72 277.7 394 42.4
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 7.2e-69 265.4 385 40.3
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 9.4e-69 265.0 418 35.4
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 2.0e-66 257.3 289 52.9
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 4.4e-66 256.1 365 39.5
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 8.2e-65 251.9 376 40.2
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.8e-64 250.8 265 53.2
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 1.7e-62 244.2 356 39.0
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 8.5e-62 241.9 377 39.3
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 9.4e-61 238.4 372 37.4
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.6e-60 237.7 349 41.0
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 2.6e-58 230.3 362 39.2
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 9.8e-58 228.4 415 35.9
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 3.5e-55 219.9 380 35.0
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 1.3e-54 218.0 272 44.5
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.7e-54 217.6 271 49.1
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 1.5e-42 177.9 233 45.1
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 3.2e-40 170.2 236 43.6
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 4.1e-40 169.9 307 34.9
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 2.8e-36 157.1 174 47.1
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 2.6e-34 150.6 175 48.6
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 4.4e-34 149.8 317 33.1
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 8.3e-33 145.6 181 45.3
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 2.7e-31 140.6 320 32.8
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 1.3e-30 138.3 117 54.7
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 3.9e-30 136.7 133 51.9
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 7.3e-29 132.5 179 41.9
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 9.5e-29 132.1 159 49.7
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 1.3e-25 121.7 106 50.9
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 8.3e-25 119.0 151 43.7
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 8.3e-25 119.0 125 46.4
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.6e-23 114.8 140 45.0
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 5.2e-19 99.8 202 32.7
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 8.4e-17 92.4 69 63.8
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 1.4e-16 91.7 274 29.2
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 2.8e-12 77.4 62 58.1
FAN12G3541 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.1e-07 61.2 70 47.1


User provided reference genes

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