Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 1.7e-263 912.1 456 100.0
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 8.5e-252 873.2 513 87.5
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 2.9e-231 805.1 539 78.5
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 5.9e-229 797.3 539 77.7
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 2.8e-226 788.5 539 77.0
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 1.4e-225 786.2 530 77.7
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 3.7e-223 778.1 534 76.4
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 1.3e-196 689.9 544 66.5
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 5.6e-195 684.5 541 66.2
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 8.1e-194 680.6 516 67.8
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 1.2e-189 666.8 541 64.9
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 6.7e-188 661.0 540 63.7
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 7.4e-187 657.5 539 64.2
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 6.2e-186 654.4 574 61.7
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 4.0e-185 651.7 538 63.9
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 4.2e-182 641.7 566 61.0
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 4.6e-181 638.3 542 62.2
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 6.0e-181 637.9 538 62.3
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 3.3e-179 632.1 540 61.5
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 1.3e-178 630.2 539 62.9
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 1.8e-177 626.3 553 60.0
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 9.0e-177 624.0 541 59.0
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 1.2e-176 623.6 546 59.7
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 1.2e-176 623.6 541 60.4
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 2.0e-176 622.9 548 60.4
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 3.4e-176 622.1 539 60.7
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 5.8e-176 621.3 544 60.5
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 2.2e-175 619.4 537 61.6
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 2.2e-175 619.4 535 61.1
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 3.8e-175 618.6 539 60.3
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 6.5e-175 617.8 540 60.6
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 8.4e-175 617.5 545 59.1
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 4.2e-174 615.1 568 58.5
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 5.5e-174 614.8 536 60.6
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 4.6e-173 611.7 542 58.9
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 7.9e-173 610.9 539 59.4
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 2.8e-170 602.4 535 59.6
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 4.8e-170 601.7 536 59.1
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 3.1e-169 599.0 538 57.4
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 6.9e-169 597.8 544 58.3
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 1.2e-168 597.0 534 59.0
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 1.2e-168 597.0 459 68.2
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 1.5e-168 596.7 536 59.7
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 7.6e-168 594.3 537 61.1
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 1.3e-167 593.6 541 58.2
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 2.5e-166 589.3 540 58.7
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 1.3e-164 583.6 536 57.8
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 3.9e-164 582.0 537 58.3
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 8.7e-164 580.9 546 57.7
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 2.5e-163 579.3 537 57.9
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 1.2e-160 570.5 567 54.9
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 2.6e-160 569.3 459 65.4
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 1.1e-158 563.9 513 57.1
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 1.1e-158 563.9 539 55.1
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 2.5e-158 562.8 543 56.5
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 9.4e-158 560.8 462 62.8
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 4.6e-157 558.5 502 58.4
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 7.9e-157 557.8 535 56.1
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 1.5e-155 553.5 535 55.0
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 9.7e-155 550.8 539 56.6
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 1.4e-153 547.0 534 55.2
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 1.4e-153 547.0 534 55.6
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 1.4e-153 547.0 534 54.5
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 1.8e-153 546.6 541 53.8
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 3.1e-153 545.8 534 55.4
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 4.1e-153 545.4 534 54.9
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 5.3e-153 545.0 534 54.5
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 9.1e-153 544.3 534 55.2
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 9.1e-153 544.3 534 54.5
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 1.2e-152 543.9 558 52.9
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 2.6e-152 542.7 534 54.5
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 2.6e-152 542.7 534 54.3
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 3.8e-151 538.9 535 54.0
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 3.2e-150 535.8 606 51.5
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 5.5e-150 535.0 539 53.8
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 1.0e-148 530.8 541 52.1
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 1.1e-147 527.3 535 53.5
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 1.7e-143 513.5 542 52.8
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 1.2e-131 474.2 527 52.6
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 1.8e-129 466.8 520 51.0
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 3.3e-126 456.1 537 49.7
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 7.2e-126 454.9 618 46.0
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 4.0e-124 449.1 539 46.6
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 7.8e-120 434.9 598 44.5
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 2.9e-119 433.0 532 44.4
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 4.3e-118 429.1 534 45.1
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 1.0e-116 424.5 532 44.0
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 1.8e-116 423.7 492 48.6
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 5.6e-110 402.1 539 44.2
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 9.5e-110 401.4 541 44.2
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 3.4e-99 366.3 426 49.5
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 1.7e-98 364.0 544 40.6
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 2.5e-94 350.1 537 40.6
HanXRQChr05g0129731 Helianthus annuus HOM05D006175 ORTHO05D008081 4.3e-94 349.4 320 57.8
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 1.6e-88 330.9 533 37.1
Lalb_Chr22g0353691 Lupinus albus HOM05D006175 ORTHO05D008081 1.6e-88 330.9 304 55.3
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 4.3e-86 322.8 528 41.5
HanXRQChr11g0338981 Helianthus annuus HOM05D006175 ORTHO05D008081 1.3e-82 311.2 305 55.4
Rhsim06G0000100 Rhododendron simsii HOM05D006175 ORTHO05D008081 4.6e-80 302.8 303 52.1
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 1.9e-70 270.8 215 63.7
FAN18G1603 Fragaria x ananassa HOM05D006175 ORTHO05D008081 5.8e-67 259.2 184 67.4
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 9.9e-67 258.5 214 64.5
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 1.1e-65 255.0 214 63.6
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 2.3e-63 247.3 437 35.0
Glyma.09G169100 Glycine max HOM05D006175 ORTHO05D008081 1.4e-60 238.0 274 48.2
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 2.9e-58 230.3 212 56.1
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 3.8e-58 229.9 212 56.1
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.1e-57 228.4 212 55.7
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 6.3e-53 212.6 530 29.2
AL4G26880 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 6.5e-50 202.6 346 39.9
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 3.1e-44 183.7 576 28.1
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 5.9e-35 152.9 289 35.6
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 2.9e-34 150.6 190 43.7
AUR62043421 Chenopodium quinoa HOM05D006175 ORTHO05D008081 7.2e-33 146.0 179 45.3
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 1.8e-31 141.4 131 58.0
VMungo1215G0683 Vigna mungo HOM05D006175 ORTHO05D008081 2.2e-29 134.4 73 79.5
CDE04G2185 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 6.5e-26 122.9 64 81.2
CDE04G1443 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 7.5e-22 109.4 102 55.9
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.2e-14 85.5 110 51.8
Thecc.04G242900 Theobroma cacao HOM05D006175 ORTHO05D008081 5.7e-14 83.2 62 62.9
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 7.5e-14 82.8 46 84.8
CAN.G93.25 Capsicum annuum HOM05D000544 ORTHO05D000137 3.8e-10 70.5 33 93.9
Gorai.009G404500 Gossypium raimondii HOM05D006175 ORTHO05D047312 4.7e-08 63.5 57 57.9
Gohir.D04G101160 Gossypium hirsutum HOM05D006175 ORTHO05D047312 1.4e-07 62.0 57 56.1
Actinidia31560 Actinidia chinensis HOM05D006175 ORTHO05D008081 1.2e-06 58.9 52 61.5
TPR.G28017 Trifolium pratense HOM05D006175 ORTHO05D008081 1.2e-06 58.9 113 34.5


User provided reference genes

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