Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 0.0e+00 1828.9 922 100.0
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 0.0e+00 1584.7 952 86.7
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 0.0e+00 1151.7 836 72.5
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 0.0e+00 1149.0 836 73.1
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 0.0e+00 1135.2 836 72.0
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 6.3e-312 1073.5 856 68.8
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 1.6e-257 893.3 889 57.5
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 9.8e-255 884.0 866 57.0
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 4.5e-252 875.2 866 56.6
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.0e-251 874.0 867 56.9
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 9.5e-242 840.9 927 53.1
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.4e-221 773.9 869 51.9
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 2.4e-216 756.5 883 51.0
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 1.1e-213 747.7 872 51.4
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 1.0e-203 714.5 854 48.8
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 6.4e-198 695.3 875 47.4
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.0e-195 686.4 873 48.2
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.0e-195 686.4 821 49.8
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 7.6e-191 671.8 897 46.9
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 1.3e-185 654.4 879 45.7
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 3.5e-180 636.3 871 46.2
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 1.9e-173 614.0 867 43.9
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 3.6e-172 609.8 840 45.7
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 6.7e-171 605.5 859 44.0
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.0e-162 577.4 805 44.8
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 3.6e-156 556.6 847 41.2
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 6.1e-156 555.8 853 42.6
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 8.0e-156 555.4 827 40.5
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.3e-155 553.9 898 38.8
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 1.1e-154 551.6 850 42.6
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 7.0e-152 542.3 883 39.5
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 1.7e-150 537.7 866 39.8
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.9e-150 537.0 845 42.1
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 3.8e-150 536.6 821 42.1
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 6.5e-150 535.8 777 43.9
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 1.5e-149 534.6 888 40.3
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 2.1e-148 530.8 880 39.4
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 2.1e-148 530.8 880 39.4
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 3.6e-148 530.0 880 39.5
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 4.7e-148 529.6 891 38.6
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 1.4e-147 528.1 912 40.2
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 2.6e-146 523.9 854 39.7
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 3.7e-145 520.0 832 40.4
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 9.1e-144 515.4 875 39.9
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 8.5e-142 508.8 794 42.3
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 2.5e-141 507.3 858 40.7
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 5.5e-141 506.1 897 39.6
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 5.5e-141 506.1 843 38.9
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 9.4e-141 505.4 884 39.6
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 6.1e-140 502.7 881 38.7
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 3.0e-139 500.4 839 41.0
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 9.8e-138 495.4 858 38.3
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 1.3e-137 495.0 833 39.0
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 4.9e-137 493.0 839 39.2
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 2.7e-135 487.3 856 38.2
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 2.3e-134 484.2 1015 34.6
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 1.9e-133 481.1 858 37.2
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 1.6e-132 478.0 847 38.4
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 3.6e-132 476.9 861 36.6
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 6.8e-131 472.6 999 35.3
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 4.1e-128 463.4 843 37.5
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 1.6e-127 461.5 847 37.4
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 7.8e-127 459.1 842 37.5
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 3.3e-125 453.8 835 37.0
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 5.6e-125 453.0 895 35.1
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 7.3e-125 452.6 974 34.7
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 4.7e-124 449.9 840 37.4
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.3e-123 447.6 1000 33.9
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 2.3e-123 447.6 1055 33.5
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 2.6e-122 444.1 835 36.8
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 3.4e-122 443.7 853 36.2
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 9.8e-122 442.2 848 36.4
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.9e-121 440.7 866 34.9
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 4.9e-121 439.9 856 36.7
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 3.5e-119 433.7 856 35.2
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 1.7e-118 431.4 854 37.1
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 3.0e-118 430.6 837 35.4
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 8.6e-118 429.1 845 36.7
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 1.1e-115 422.2 849 34.3
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.4e-115 421.8 879 35.7
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 1.8e-115 421.4 847 36.6
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 7.1e-112 409.5 859 36.8
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 6.0e-111 406.4 553 44.8
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 7.8e-111 406.0 867 33.4
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 1.3e-110 405.2 912 34.4
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 5.1e-110 403.3 882 34.1
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 4.7e-108 396.7 644 37.6
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 1.1e-107 395.6 840 33.7
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 8.9e-107 392.5 878 32.9
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.6e-103 381.7 1012 31.8
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 6.0e-103 379.8 880 31.9
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 2.6e-98 364.4 847 33.2
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 7.6e-98 362.8 849 32.0
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.6e-95 355.1 825 33.0
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.0e-94 352.4 488 45.5
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 7.3e-93 346.3 883 31.7
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 2.4e-91 341.3 491 40.1
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 1.6e-84 318.5 832 31.2
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.1e-83 315.8 919 30.1
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 4.0e-83 313.9 566 38.0
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 4.6e-79 300.4 703 33.3
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 5.1e-78 297.0 652 33.6
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 1.9e-72 278.5 875 27.7
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 3.2e-72 277.7 853 29.1
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 4.2e-72 277.3 661 32.7
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 5.5e-72 276.9 760 32.8
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 3.9e-70 270.8 566 34.8
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 1.5e-69 268.9 518 35.3
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 2.1e-68 265.0 538 34.0
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 3.7e-68 264.2 521 35.9
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 6.3e-68 263.5 573 34.4
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 5.3e-67 260.4 500 35.2
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 5.9e-66 256.9 523 35.4
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.0e-65 256.1 452 38.3
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.2e-65 255.0 498 34.9
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 1.1e-64 252.7 513 34.9
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 1.1e-64 252.7 513 34.9
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 4.2e-64 250.8 505 34.5
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 2.7e-63 248.1 513 34.9
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 4.6e-63 247.3 528 34.7
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 1.0e-62 246.1 533 34.1
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 1.5e-61 242.3 528 33.3
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.3e-57 229.2 905 27.5
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.2e-57 228.4 420 35.5
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 3.2e-56 224.6 616 30.8
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 4.2e-56 224.2 865 26.7
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 5.5e-56 223.8 839 28.7
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 7.2e-56 223.4 535 33.8
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 7.9e-55 219.9 484 32.6
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.8e-54 218.8 504 33.9
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 3.0e-54 218.0 836 26.3
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 3.9e-54 217.6 345 39.4
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.1e-53 216.1 649 31.0
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 6.3e-52 210.3 582 30.2
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 6.3e-52 210.3 582 30.9
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 6.3e-52 210.3 734 28.2
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 1.8e-51 208.8 674 27.4
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 1.3e-49 202.6 567 30.2
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 1.9e-48 198.7 341 40.2
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 1.8e-46 192.2 615 31.4
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.2e-44 185.3 517 27.9
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 4.1e-43 181.0 579 30.6
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 2.0e-34 152.1 243 44.0
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 2.0e-34 152.1 531 26.6
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.0e-33 149.8 137 61.3
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.9e-32 145.6 859 21.5
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 7.0e-27 127.1 192 45.3
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 2.9e-25 121.7 152 46.1
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 4.2e-24 117.9 88 61.4
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 1.6e-23 115.9 88 59.1
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 2.7e-23 115.2 152 44.7
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 3.0e-22 111.7 478 23.0
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 3.5e-18 98.2 154 33.1
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.5e-16 92.8 100 45.0
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 4.3e-16 91.3 767 21.4
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 4.0e-14 84.7 98 38.8
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 1.3e-12 79.7 83 50.6
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 3.7e-12 78.2 173 27.2
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 3.5e-10 71.6 75 52.0
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-08 65.5 78 37.2
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 1.0e-06 60.1 64 40.6
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 1.0e-06 60.1 50 60.0
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 1.8e-06 59.3 60 36.7
Peaxi162Scf00066g00717 Petunia axillaris HOM05D004258 ORTHO05D005163 3.1e-06 58.5 86 38.4
TPR.G6348 Trifolium pratense HOM05D004258 ORTHO05D005163 6.8e-06 57.4 87 36.8


User provided reference genes

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