Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.8e-228 795.0 437 100.0
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.8e-201 704.9 438 91.1
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 2.4e-174 615.9 439 80.6
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 1.7e-172 609.8 461 77.9
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 5.1e-169 598.2 438 73.3
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 4.3e-160 568.5 455 76.3
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.8e-159 565.8 437 72.3
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 8.1e-151 537.7 439 72.7
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 1.0e-145 520.8 438 71.7
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 4.9e-140 501.9 438 62.8
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 1.0e-137 494.2 437 67.5
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.5e-136 490.3 452 64.4
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 1.8e-134 483.4 440 63.2
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 2.4e-134 483.0 450 61.3
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 5.3e-134 481.9 442 62.4
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 4.2e-131 472.2 449 64.8
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 2.7e-130 469.5 456 64.7
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 1.5e-128 463.8 440 63.9
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 2.5e-128 463.0 450 62.7
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 9.7e-128 461.1 438 60.5
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 2.2e-127 459.9 466 60.1
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 3.7e-127 459.1 441 62.8
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 8.2e-127 458.0 438 65.5
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 8.2e-127 458.0 442 64.5
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.1e-126 457.6 481 57.2
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 5.3e-126 455.3 437 59.3
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 5.3e-126 455.3 460 62.0
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 9.1e-126 454.5 460 63.3
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 5.9e-125 451.8 474 56.3
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.1e-123 447.6 442 58.1
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 4.2e-123 445.7 445 62.0
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 1.6e-122 443.7 437 62.0
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 4.7e-122 442.2 445 60.4
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 6.1e-122 441.8 451 58.5
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 2.3e-121 439.9 495 55.4
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 3.0e-121 439.5 469 57.1
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 6.7e-121 438.3 437 59.5
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 3.3e-120 436.0 469 59.3
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 7.4e-120 434.9 470 55.1
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 9.7e-120 434.5 443 60.5
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 9.7e-120 434.5 444 60.1
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 1.3e-119 434.1 449 61.5
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 2.8e-119 433.0 474 59.5
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 8.2e-119 431.4 470 54.9
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 1.1e-118 431.0 452 57.3
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 4.1e-118 429.1 444 59.5
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 5.3e-118 428.7 502 55.8
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 5.3e-118 428.7 470 54.7
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 1.5e-117 427.2 425 63.1
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 3.5e-117 426.0 440 58.0
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 7.7e-117 424.9 452 56.9
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 1.3e-116 424.1 496 55.6
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.8e-116 422.5 477 57.9
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.2e-115 419.1 490 55.9
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 7.2e-115 418.3 484 57.2
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 2.1e-114 416.8 438 56.4
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 3.6e-114 416.0 449 59.7
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.0e-113 414.5 478 58.8
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 3.9e-113 412.5 479 57.2
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 1.1e-112 411.0 442 57.0
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 2.0e-112 410.2 475 56.4
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 1.7e-111 407.1 469 55.2
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.4e-110 404.1 478 58.6
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 1.4e-110 404.1 517 51.8
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 5.3e-110 402.1 461 55.1
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 2.0e-109 400.2 490 54.3
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.7e-108 397.1 435 55.4
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 2.2e-108 396.7 502 50.0
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 3.8e-108 396.0 522 52.3
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 1.5e-107 394.0 450 54.4
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 1.5e-107 394.0 449 56.1
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 3.2e-107 392.9 463 54.2
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 7.2e-107 391.7 497 50.7
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 2.1e-106 390.2 438 58.7
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 2.7e-106 389.8 441 55.1
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 3.6e-106 389.4 460 57.8
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 1.4e-105 387.5 451 55.2
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 1.8e-105 387.1 475 55.8
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.5e-104 384.0 441 55.6
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 2.6e-104 383.3 490 51.8
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 3.4e-104 382.9 467 57.0
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 7.5e-104 381.7 456 54.6
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 7.5e-104 381.7 437 55.8
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 4.8e-103 379.0 453 52.8
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 4.1e-102 375.9 428 55.8
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 5.3e-102 375.6 407 59.5
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 5.9e-101 372.1 445 51.5
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 5.9e-101 372.1 449 53.2
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 1.3e-100 370.9 450 54.2
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.9e-100 369.8 441 54.2
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 1.3e-95 354.4 446 55.6
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 2.8e-95 353.2 450 50.2
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 3.7e-95 352.8 445 56.9
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 2.7e-93 346.7 462 49.4
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 5.9e-93 345.5 447 52.8
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 7.7e-93 345.1 499 50.5
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 3.8e-92 342.8 464 51.9
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 6.6e-92 342.0 405 50.4
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 1.1e-91 341.3 452 51.5
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 6.1e-90 335.5 456 49.6
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 1.0e-89 334.7 495 46.9
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 3.0e-89 333.2 425 50.8
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 5.2e-89 332.4 447 50.8
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 2.0e-88 330.5 452 50.7
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 2.0e-85 320.5 380 55.3
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 4.6e-85 319.3 507 48.1
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 1.3e-84 317.8 459 46.4
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 6.6e-84 315.5 475 45.1
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 1.5e-83 314.3 191 82.7
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 9.8e-80 301.6 437 48.5
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 2.4e-78 297.0 507 43.8
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 9.2e-78 295.0 168 86.9
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 9.2e-78 295.0 427 46.6
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 1.9e-75 287.3 174 82.2
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 5.6e-75 285.8 475 45.9
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 9.5e-75 285.0 192 76.0
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 7.5e-72 275.4 336 52.4
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 1.1e-70 271.6 320 52.2
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 5.1e-68 262.7 461 46.6
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 3.7e-63 246.5 382 47.4
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 1.4e-62 244.6 380 45.8
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 9.9e-56 221.9 497 37.2
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 9.9e-56 221.9 128 83.6
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 3.5e-53 213.4 337 46.6
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 1.1e-49 201.8 383 38.9
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 1.4e-46 191.4 172 61.6
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 2.8e-42 177.2 447 34.7
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 2.2e-39 167.5 157 55.4
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 1.9e-35 154.5 183 46.4
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 3.8e-31 140.2 410 32.0
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 9.3e-30 135.6 178 42.1
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.5e-27 127.5 94 70.2
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 3.1e-25 120.6 336 32.4
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 5.3e-25 119.8 162 48.8
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 2.0e-24 117.9 65 90.8
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 1.0e-20 105.5 97 60.8
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.5e-19 100.9 108 54.6
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 1.5e-16 91.7 124 44.4
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 1.3e-15 88.6 103 49.5
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 4.2e-14 83.6 233 32.2
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 9.4e-14 82.4 46 82.6
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 1.6e-13 81.6 74 59.5
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 4.6e-13 80.1 410 28.5
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 4.6e-13 80.1 410 28.5
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 1.7e-10 71.6 93 50.5
vmacro14248 Vaccinium macrocarpon HOM05D005375 ORTHO05D426817 7.2e-06 56.2 40 72.5


User provided reference genes

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