Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001152g0970 Nicotiana tabacum HOM05D003517 ORTHO05D025894 7.1e-144 513.8 246 100.0
Nitab4.5_0000172g1110 Nicotiana tabacum HOM05D003517 ORTHO05D009798 7.3e-40 168.3 253 44.3
Nitab4.5_0003945g0070 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.2e-35 152.9 249 43.4
Gorai.001G161800 Gossypium raimondii HOM05D003517 ORTHO05D009798 2.4e-30 136.7 200 46.0
Nitab4.5_0001152g0060 Nicotiana tabacum HOM05D030795 ORTHO05D025894 1.7e-25 120.6 110 60.9
SGA_v2.0_scaffold420G51390 Striga asiatica HOM05D003517 ORTHO05D009798 1.1e-19 101.3 173 41.0
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 7.1e-19 98.6 234 36.3
Oeu030838.1 Olea europaea HOM05D030795 ORTHO05D025894 4.6e-18 95.9 155 43.2
arahy.Tifrunner.gnm1.ann1.PT41Y0 Arachis hypogaea HOM05D003517 ORTHO05D009798 5.6e-16 89.0 66 66.7
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 1.3e-15 87.8 66 66.7
CAN.G85.23 Capsicum annuum HOM05D003517 ORTHO05D009798 1.3e-15 87.8 66 66.7
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 1.3e-15 87.8 66 66.7
Lj5g0015285 Lotus japonicus HOM05D003517 ORTHO05D009798 1.6e-15 87.4 50 78.0
LjContig00439g0008559 Lotus japonicus HOM05D003517 ORTHO05D009798 1.6e-15 87.4 66 65.2
Lalb_Chr00c24g0406771 Lupinus albus HOM05D003517 ORTHO05D009798 1.6e-15 87.4 66 65.2
Medtr0082s0030 Medicago truncatula HOM05D003517 ORTHO05D009798 1.6e-15 87.4 66 65.2
TPR.G20538 Trifolium pratense HOM05D003517 ORTHO05D009798 1.6e-15 87.4 66 65.2
CAN.G1109.3 Capsicum annuum HOM05D003517 ORTHO05D009798 8.1e-15 85.1 66 65.2
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 8.1e-15 85.1 66 63.6
HanXRQChr16g0504301 Helianthus annuus HOM05D003517 ORTHO05D009798 2.4e-14 83.6 50 74.0
HanXRQMTg0579381 Helianthus annuus HOM05D003517 ORTHO05D009798 2.4e-14 83.6 50 74.0
Hma1.2p1_0020F.1_g014220 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 2.4e-14 83.6 66 63.6
RcHm_v2.0_MTg0499001 Rosa chinensis HOM05D003517 ORTHO05D009798 2.4e-14 83.6 50 76.0
VMungo0985G0017 Vigna mungo HOM05D003517 ORTHO05D009798 2.4e-14 83.6 50 72.0
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.5e-13 80.9 166 36.1
Lalb_Chr22g0353801 Lupinus albus HOM05D003517 ORTHO05D009798 5.8e-13 79.0 66 60.6
AT2G07734 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 7.6e-13 78.6 50 70.0
ATMG00290 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 7.6e-13 78.6 50 70.0
A04p09560 Brassica napus HOM05D003517 ORTHO05D009798 7.6e-13 78.6 50 70.0
BolSC28t60322H Brassica oleracea HOM05D003517 ORTHO05D009798 7.6e-13 78.6 50 70.0
BolSC28t60424H Brassica oleracea HOM05D003517 ORTHO05D009798 7.6e-13 78.6 50 70.0
BraSC48t46288Z Brassica rapa HOM05D003517 ORTHO05D009798 7.6e-13 78.6 50 70.0
BraSC48t46302Z Brassica rapa HOM05D003517 ORTHO05D009798 7.6e-13 78.6 50 70.0
Thhalv10023100m.g Eutrema salsugineum HOM05D003517 ORTHO05D009798 7.6e-13 78.6 50 70.0
Zm00001eb384400 Zea mays HOM05D003517 ORTHO05D009798 1.7e-12 77.4 50 70.0
Zm00001eb438100 Zea mays HOM05D003517 ORTHO05D009798 1.7e-12 77.4 50 70.0
Zm00001eb438980 Zea mays HOM05D003517 ORTHO05D009798 1.7e-12 77.4 50 70.0
Zm00001eb439060 Zea mays HOM05D003517 ORTHO05D009798 1.7e-12 77.4 50 70.0
Sp3g25550 Schrenkiella parvula HOM05D003517 ORTHO05D009798 2.9e-12 76.6 50 68.0
Nitab4.5_0001152g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.1e-11 74.7 44 77.3
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 1.9e-11 73.9 50 70.0
SGA_v2.0_scaffold648G53338 Striga asiatica HOM05D003517 ORTHO05D009798 9.3e-11 71.6 50 64.0
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 3.5e-10 69.7 35 88.6
SabraMtG0002700 Salix brachista HOM05D000890 ORTHO05D000697 4.6e-10 69.3 85 49.4
EL10Ac7g18051 Beta vulgaris HOM05D003517 ORTHO05D009798 6.0e-10 68.9 50 64.0
PGSC0003DMG400033608 Solanum tuberosum HOM05D003517 ORTHO05D009798 7.9e-10 68.6 35 88.6
GSVIVG01006670001 Vitis vinifera HOM05D030795 ORTHO05D025894 3.9e-09 66.2 128 40.6
SEGI_36410 Sequoiadendron giganteum HOM05D003517 ORTHO05D009798 5.1e-09 65.9 35 82.9
Solyc11g030940.3 Solanum lycopersicum HOM05D003517 ORTHO05D009798 8.7e-09 65.1 49 63.3
CsaV3_UNG208660 Cucumis sativus L. HOM05D003517 ORTHO05D009798 1.1e-08 64.7 35 82.9
Nn1g10026 Nelumbo nucifera HOM05D003517 ORTHO05D009798 2.5e-08 63.5 35 80.0
Nn1g10028 Nelumbo nucifera HOM05D003517 ORTHO05D009798 2.5e-08 63.5 35 80.0
Zm00001eb436030 Zea mays HOM05D003517 ORTHO05D009798 1.3e-07 61.2 35 77.1
Eucgr.H02717 Eucalyptus grandis HOM05D003517 ORTHO05D009798 2.1e-07 60.5 35 77.1
Lsat_1_v5_gn_7_67721 Lactuca sativa HOM05D003517 ORTHO05D009798 3.7e-07 59.7 35 77.1
SHI26877 Sapria himalayana HOM05D030795 ORTHO05D025894 4.8e-07 59.3 127 37.8
Nitab4.5_0000172g2160 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.0e-06 56.2 41 68.3
Gohir.A13G071500 Gossypium hirsutum HOM05D003517 ORTHO05D009798 9.0e-06 55.1 49 51.0
HanXRQChr10g0302361 Helianthus annuus HOM05D003517 ORTHO05D009798 9.0e-06 55.1 35 71.4


User provided reference genes

Program Settings