Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001152g0130 Nicotiana tabacum HOM05D000435 ORTHO05D013824 6.6e-51 203.8 103 100.0
Nitab4.5_0001152g0100 Nicotiana tabacum HOM05D000435 ORTHO05D016180 5.8e-47 190.7 101 95.0
Nitab4.5_0001152g0690 Nicotiana tabacum HOM05D000435 ORTHO05D013824 6.6e-35 150.6 122 68.0
Nitab4.5_0005853g0060 Nicotiana tabacum HOM05D068302 ORTHO05D013824 8.6e-35 150.2 119 70.6
Nitab4.5_0000172g2200 Nicotiana tabacum HOM05D000435 ORTHO05D013824 2.8e-33 145.2 120 66.7
Peaxi162Scf00139g01031 Petunia axillaris HOM05D000435 ORTHO05D000430 8.1e-33 143.7 117 65.0
CAN.G623.32 Capsicum annuum HOM05D000435 ORTHO05D000430 1.4e-32 142.9 117 65.0
CAN.G85.21 Capsicum annuum HOM05D000435 ORTHO05D016180 1.8e-32 142.5 111 70.3
Nitab4.5_0000085g0100 Nicotiana tabacum HOM05D000435 ORTHO05D013824 5.2e-32 141.0 111 67.6
CAN.G1109.6 Capsicum annuum HOM05D000435 ORTHO05D016180 3.4e-31 138.3 120 65.0
Solyc07g065770.3 Solanum lycopersicum HOM05D000435 ORTHO05D013824 3.4e-31 138.3 117 64.1
Nitab4.5_0000152g0410 Nicotiana tabacum HOM05D000435 ORTHO05D000430 4.4e-31 137.9 118 65.3
CAN.G1.3 Capsicum annuum HOM05D000435 ORTHO05D016180 1.7e-30 136.0 104 71.2
Sopen07g033980 Solanum pennellii HOM05D003572 ORTHO05D004118 4.1e-29 131.3 114 63.2
Nitab4.5_0010643g0020 Nicotiana tabacum HOM05D000435 ORTHO05D000430 1.2e-28 129.8 111 65.8
Dinv10357 Davidia involucrata HOM05D000435 ORTHO05D000430 1.1e-26 123.2 117 59.0
DCAR_017069 Daucus carota HOM05D000435 ORTHO05D000430 5.6e-26 120.9 117 59.0
Cpa.g.sc12.135 Carica papaya HOM05D000435 ORTHO05D000430 2.8e-25 118.6 114 60.5
CAN.G1.23 Capsicum annuum HOM05D000435 ORTHO05D016180 4.7e-25 117.9 100 66.0
Potri.001G370600 Populus trichocarpa HOM05D000435 ORTHO05D000430 1.1e-24 116.7 118 58.5
QL08p003237 Quercus lobata HOM05D000435 ORTHO05D000430 1.1e-24 116.7 117 56.4
Manes.03G143200 Manihot esculenta HOM05D000435 ORTHO05D000430 1.4e-24 116.3 117 59.0
Sabra16G0243600 Salix brachista HOM05D000435 ORTHO05D000430 1.8e-24 115.9 117 57.3
CSS0004404 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 4.0e-24 114.8 119 57.1
CSS0032781 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 4.0e-24 114.8 119 57.1
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 4.0e-24 114.8 115 57.4
Atru.chr2.3749 Acer truncatum HOM05D000435 ORTHO05D000430 8.9e-24 113.6 116 56.9
Atru.chr2.3763 Acer truncatum HOM05D000435 ORTHO05D000430 8.9e-24 113.6 116 56.9
Sc03g0011590 Simmondsia chinensis HOM05D000435 ORTHO05D000430 1.5e-23 112.8 116 56.0
Duzib170G0379 Durio zibethinus HOM05D000435 ORTHO05D000430 2.0e-23 112.5 115 53.9
Prupe.6G027000 Prunus persica HOM05D000435 ORTHO05D000430 2.0e-23 112.5 116 56.0
Lj1A893T55 Lonicera japonica HOM05D000435 ORTHO05D000430 4.4e-23 111.3 116 56.9
DCAR_013252 Daucus carota HOM05D000435 ORTHO05D000430 5.8e-23 110.9 118 55.1
Cfa016927 Carpinus fangiana HOM05D000435 ORTHO05D000430 7.6e-23 110.5 117 56.4
Lalb_Chr10g0107501 Lupinus albus HOM05D000435 ORTHO05D000430 7.6e-23 110.5 116 53.4
Nitab4.5_0000172g0070 Nicotiana tabacum HOM05D000435 ORTHO05D016180 9.9e-23 110.2 72 77.8
Haze_09858 Corylus avellana HOM05D000435 ORTHO05D000430 1.7e-22 109.4 117 56.4
Thecc.07G008500 Theobroma cacao HOM05D000435 ORTHO05D000430 2.2e-22 109.0 115 56.5
PGSC0003DMG400022268 Solanum tuberosum HOM05D003572 ORTHO05D004118 3.8e-22 108.2 96 61.5
LjContig00081g0009877 Lotus japonicus HOM05D000435 ORTHO05D000430 4.9e-22 107.8 117 51.3
Psat0s4150g0240 Pisum sativum HOM05D000435 ORTHO05D000430 6.4e-22 107.5 119 52.1
AUR62017136 Chenopodium quinoa HOM05D000435 ORTHO05D000430 8.4e-22 107.1 116 55.2
Ca_06413_v3 Cicer arietinum L. HOM05D000435 ORTHO05D000430 8.4e-22 107.1 118 51.7
Gohir.A08G025300 Gossypium hirsutum HOM05D000435 ORTHO05D000430 8.4e-22 107.1 117 53.8
Gohir.D08G035800 Gossypium hirsutum HOM05D000435 ORTHO05D000430 8.4e-22 107.1 117 53.8
Gorai.004G033800 Gossypium raimondii HOM05D000435 ORTHO05D000430 8.4e-22 107.1 117 53.8
Potri.011G094650 Populus trichocarpa HOM05D000435 ORTHO05D000430 1.1e-21 106.7 118 54.2
RcHm_v2.0_Chr5g0075901 Rosa chinensis HOM05D000435 ORTHO05D000430 1.1e-21 106.7 117 53.8
COL.COLO4_07733 Corchorus olitorius HOM05D003572 ORTHO05D004118 1.4e-21 106.3 118 55.1
TWI39G0143 Tripterygium wilfordii HOM05D000435 ORTHO05D000430 1.4e-21 106.3 117 55.6
GSVIVG01014733001 Vitis vinifera HOM05D000435 ORTHO05D000430 1.9e-21 105.9 117 53.8
CiPaw.11G206300 Carya illinoinensis HOM05D000435 ORTHO05D000430 3.2e-21 105.1 117 53.8
Glyma.14G012000 Glycine max HOM05D000435 ORTHO05D000430 3.2e-21 105.1 117 48.7
MD11G1036200 Malus domestica HOM05D000435 ORTHO05D000430 3.2e-21 105.1 117 52.1
Phvul.008G280800 Phaseolus vulgaris HOM05D000435 ORTHO05D000430 3.2e-21 105.1 117 48.7
VMungo0647G0856 Vigna mungo HOM05D000435 ORTHO05D000430 3.2e-21 105.1 117 50.4
Eucgr.F03676 Eucalyptus grandis HOM05D000435 ORTHO05D000430 5.4e-21 104.4 117 49.6
SGA_v2.0_scaffold171G38846 Striga asiatica HOM05D000435 ORTHO05D000430 5.4e-21 104.4 113 54.0
AUR62035671 Chenopodium quinoa HOM05D000435 ORTHO05D000430 7.1e-21 104.0 116 54.3
Nitab4.5_0008300g0010 Nicotiana tabacum HOM05D000435 ORTHO05D013824 7.1e-21 104.0 92 62.0
Migut.M01629 Erythranthe guttata HOM05D000435 ORTHO05D000430 9.2e-21 103.6 117 54.7
TPR.G1291 Trifolium pratense HOM05D000435 ORTHO05D000430 1.2e-20 103.2 119 48.7
Glyma.02G302200 Glycine max HOM05D000435 ORTHO05D000430 1.6e-20 102.8 117 48.7
Ciclev10010223m.g Citrus clementina HOM05D000435 ORTHO05D000430 2.1e-20 102.4 119 54.6
arahy.Tifrunner.gnm1.ann1.64V7P3 Arachis hypogaea HOM05D000435 ORTHO05D000430 5.1e-19 97.8 119 50.4
FvH4_3g42410 Fragaria vesca HOM05D000435 ORTHO05D000430 6.6e-19 97.4 117 50.4
FAN11G3608 Fragaria x ananassa HOM05D000435 ORTHO05D000430 6.6e-19 97.4 117 50.4
FAN28G0967 Fragaria x ananassa HOM05D000435 ORTHO05D000430 6.6e-19 97.4 117 50.4
Medtr5g096390 Medicago truncatula HOM05D000435 ORTHO05D000430 6.6e-19 97.4 119 49.6
Oeu005470.2 Olea europaea HOM05D000435 ORTHO05D000430 8.7e-19 97.1 98 56.1
EL10Ac4g07534 Beta vulgaris HOM05D000435 ORTHO05D000430 1.5e-18 96.3 116 50.0
arahy.Tifrunner.gnm1.ann1.D8MFXN Arachis hypogaea HOM05D000435 ORTHO05D000430 2.5e-18 95.5 121 48.8
CAN.G78.6 Capsicum annuum HOM05D000435 ORTHO05D013824 2.5e-18 95.5 55 85.5
Lsat_1_v5_gn_7_114141 Lactuca sativa HOM05D000435 ORTHO05D000430 4.3e-18 94.7 118 50.8
Actinidia03625 Actinidia chinensis HOM05D000435 ORTHO05D000430 5.6e-18 94.4 108 50.9
FAN16G3565 Fragaria x ananassa HOM05D000435 ORTHO05D000430 7.3e-18 94.0 117 48.7
THA.LOC104815690 Tarenaya hassleriana HOM05D000435 ORTHO05D000430 7.3e-18 94.0 108 53.7
ECA236G1471 Erigeron canadensis HOM05D000435 ORTHO05D000430 9.6e-18 93.6 112 51.8
CAN.G72.11 Capsicum annuum HOM05D000435 ORTHO05D013824 3.6e-17 91.7 55 83.6
CAN.G1485.3 Capsicum annuum HOM05D000435 ORTHO05D013824 4.8e-17 91.3 55 81.8
FAN25G2805 Fragaria x ananassa HOM05D000435 ORTHO05D000430 4.8e-17 91.3 107 50.5
CAN.G131.13 Capsicum annuum HOM05D044362 ORTHO05D016180 1.1e-16 90.1 90 61.1
Nn2g15498 Nelumbo nucifera HOM05D000435 ORTHO05D000430 1.1e-16 90.1 115 45.2
Nitab4.5_0008535g0030 Nicotiana tabacum HOM05D000435 ORTHO05D013824 1.1e-16 90.1 55 81.8
PSO675G1718 Papaver somniferum HOM05D000435 ORTHO05D000430 1.4e-16 89.7 120 46.7
PSO541G1261 Papaver somniferum HOM05D000435 ORTHO05D000430 1.8e-16 89.4 120 46.7
Ca_12447_v3 Cicer arietinum L. HOM05D000435 ORTHO05D000430 2.4e-16 89.0 114 50.0
CANSAT11G0821 Cannabis sativa HOM05D000435 ORTHO05D000430 3.1e-16 88.6 121 49.6
Sed0013125 Sechium edule HOM05D000435 ORTHO05D000430 5.3e-16 87.8 118 45.8
FAN21G0356 Fragaria x ananassa HOM05D000435 ORTHO05D000430 2.0e-15 85.9 112 46.4
Cc05_g15220 Coffea canephora HOM05D000435 ORTHO05D000430 5.8e-15 84.3 118 53.4
VMungo0540G1677 Vigna mungo HOM05D003572 ORTHO05D004118 5.8e-15 84.3 117 42.7
Aqoxy3G03979 Aquilegia oxysepala HOM05D000435 ORTHO05D000430 9.9e-15 83.6 119 43.7
HanXRQChr11g0334421 Helianthus annuus HOM05D000435 ORTHO05D000430 1.3e-14 83.2 114 47.4
Rhsim04G0010800 Rhododendron simsii HOM05D000435 ORTHO05D000430 1.3e-14 83.2 118 48.3
Nitab4.5_0002312g0050 Nicotiana tabacum HOM05D000435 ORTHO05D013824 1.7e-14 82.8 53 75.5
Nitab4.5_0000085g0110 Nicotiana tabacum HOM05D000435 ORTHO05D013824 2.2e-14 82.4 81 56.8
Phvul.006G059212 Phaseolus vulgaris HOM05D000435 ORTHO05D000430 2.2e-14 82.4 117 42.7
Aa31LG8G420 Aethionema arabicum HOM05D000435 ORTHO05D000430 3.8e-14 81.6 112 43.8
Nitab4.5_0001788g0220 Nicotiana tabacum HOM05D000435 ORTHO05D013824 3.8e-14 81.6 51 78.4
CARHR087810 Cardamine hirsuta HOM05D000435 ORTHO05D000430 3.2e-13 78.6 97 49.5
Glyma.18G074800 Glycine max HOM05D000435 ORTHO05D000430 3.2e-13 78.6 117 41.0
HanXRQChr04g0114551 Helianthus annuus HOM05D000435 ORTHO05D000430 3.2e-13 78.6 109 47.7
Sp3g11390 Schrenkiella parvula HOM05D000435 ORTHO05D000430 4.2e-13 78.2 97 50.5
AL3G24980 Arabidopsis lyrata HOM05D000435 ORTHO05D000430 5.4e-13 77.8 97 49.5
Thhalv10020198m.g Eutrema salsugineum HOM05D000435 ORTHO05D000430 7.1e-13 77.4 97 48.5
Carub.0003s1257 Capsella rubella HOM05D000435 ORTHO05D000430 9.3e-13 77.0 97 48.5
AT3G13220 Arabidopsis thaliana HOM05D000435 ORTHO05D000430 2.1e-12 75.9 97 48.5
Lalb_Chr20g0114061 Lupinus albus HOM05D000435 ORTHO05D000430 2.1e-12 75.9 117 41.9
ClCG10G004470 Citrullus lanatus HOM05D000435 ORTHO05D000430 4.6e-12 74.7 122 42.6
TPR.G1281 Trifolium pratense HOM05D000435 ORTHO05D013824 8.7e-11 70.5 46 71.7
C01p51870 Brassica napus HOM05D000435 ORTHO05D000430 1.1e-10 70.1 95 47.4
BolC1t05135H Brassica oleracea HOM05D000435 ORTHO05D000430 1.1e-10 70.1 95 47.4
Lj6g0002997 Lotus japonicus HOM05D000435 ORTHO05D000430 1.1e-10 70.1 117 41.9
MBI15_g38526_MAGBIO Magnolia biondii HOM05D000435 ORTHO05D000430 1.5e-10 69.7 117 42.7
arahy.Tifrunner.gnm1.ann1.1C3JIX Arachis hypogaea HOM05D000435 ORTHO05D000430 1.9e-10 69.3 127 41.7
A01p40340 Brassica napus HOM05D000435 ORTHO05D000430 1.9e-10 69.3 95 47.4
BraA01t04069Z Brassica rapa HOM05D000435 ORTHO05D000430 1.9e-10 69.3 95 47.4
Nitab4.5_0002072g0130 Nicotiana tabacum HOM05D000435 ORTHO05D013824 5.6e-10 67.8 40 80.0
vmacro09627 Vaccinium macrocarpon HOM05D000435 ORTHO05D000430 7.3e-10 67.4 158 35.4
BcaB04g21003 Brassica carinata HOM05D000435 ORTHO05D000430 1.3e-09 66.6 95 45.3
CsaV3_3G004300 Cucumis sativus L. HOM05D000435 ORTHO05D000430 1.3e-09 66.6 123 40.7
MELO3C014121.2 Cucumis melo HOM05D000435 ORTHO05D000430 1.1e-08 63.5 124 40.3
arahy.Tifrunner.gnm1.ann1.2NP6SE Arachis hypogaea HOM05D000435 ORTHO05D000430 1.4e-08 63.2 118 41.5
CAN.G390.26 Capsicum annuum HOM05D000435 ORTHO05D016180 3.4e-07 58.5 44 63.6
ATR0751G105 Amborella trichopoda HOM05D000435 ORTHO05D000430 2.9e-06 55.5 117 35.9


User provided reference genes

Program Settings