Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001079g0110 Nicotiana tabacum HOM05D004807 ORTHO05D005915 0.0e+00 1971.4 1003 100.0
Nitab4.5_0005684g0020 Nicotiana tabacum HOM05D004807 ORTHO05D005915 0.0e+00 1802.7 1003 93.2
CAN.G128.57 Capsicum annuum HOM05D004807 ORTHO05D005915 0.0e+00 1637.9 1395 65.5
Sopen10g031170 Solanum pennellii HOM05D004807 ORTHO05D005915 0.0e+00 1627.8 1396 64.3
Solyc10g080630.2 Solanum lycopersicum HOM05D004807 ORTHO05D005915 0.0e+00 1619.0 1396 64.0
Peaxi162Scf00249g00811 Petunia axillaris HOM05D004807 ORTHO05D005915 0.0e+00 1485.7 1397 60.8
Lj1A1135G80 Lonicera japonica HOM05D004807 ORTHO05D005915 0.0e+00 1316.2 1388 54.0
Atru.chr8.1221 Acer truncatum HOM05D004807 ORTHO05D005915 0.0e+00 1233.0 1408 50.9
GSVIVG01033428001 Vitis vinifera HOM05D004807 ORTHO05D005915 0.0e+00 1219.9 1373 52.1
Manes.08G040000 Manihot esculenta HOM05D004807 ORTHO05D005915 0.0e+00 1211.8 1395 50.5
Rhsim03G0002200 Rhododendron simsii HOM05D004807 ORTHO05D005915 0.0e+00 1203.3 1383 50.8
SalBow6G5976 Salvia bowleyana HOM05D004807 ORTHO05D005915 0.0e+00 1195.6 1387 50.2
CiPaw.09G026200 Carya illinoinensis HOM05D004807 ORTHO05D005915 0.0e+00 1194.1 1404 49.7
Nn7g35896 Nelumbo nucifera HOM05D004807 ORTHO05D005915 0.0e+00 1187.2 1305 51.9
Migut.J01878 Erythranthe guttata HOM05D004807 ORTHO05D005915 0.0e+00 1172.9 1399 50.0
CANSAT64G1965 Cannabis sativa HOM05D004807 ORTHO05D005915 0.0e+00 1165.2 1399 48.7
Thecc.05G180400 Theobroma cacao HOM05D004807 ORTHO05D005915 0.0e+00 1164.4 1404 48.4
QL07p025555 Quercus lobata HOM05D004807 ORTHO05D005915 0.0e+00 1163.3 1479 47.4
Prupe.7G085900 Prunus persica HOM05D004807 ORTHO05D005915 0.0e+00 1160.2 1401 49.5
Potri.006G197200 Populus trichocarpa HOM05D004807 ORTHO05D005915 0.0e+00 1154.8 1404 48.5
SGA_v2.0_scaffold105G30514 Striga asiatica HOM05D004807 ORTHO05D005915 0.0e+00 1153.3 1379 49.4
MD14G1049600 Malus domestica HOM05D004807 ORTHO05D005915 0.0e+00 1149.0 1391 49.3
TAR623G0137 Trochodendron aralioides HOM05D004807 ORTHO05D005915 0.0e+00 1146.0 1405 48.4
TWI74G1245 Tripterygium wilfordii HOM05D004807 ORTHO05D005915 0.0e+00 1143.6 1411 48.7
CsaV3_3G038490 Cucumis sativus L. HOM05D004807 ORTHO05D005915 0.0e+00 1140.9 1397 48.0
ClCG10G017810 Citrullus lanatus HOM05D004807 ORTHO05D005915 0.0e+00 1139.8 1394 47.7
Cfa020114 Carpinus fangiana HOM05D004807 ORTHO05D005915 0.0e+00 1134.4 1402 48.1
Sed0007842 Sechium edule HOM05D004807 ORTHO05D005915 0.0e+00 1132.5 1395 47.5
Gorai.006G145300 Gossypium raimondii HOM05D004807 ORTHO05D005915 0.0e+00 1125.5 1407 47.6
Gohir.A09G130500 Gossypium hirsutum HOM05D004807 ORTHO05D005915 0.0e+00 1124.8 1407 47.6
Gohir.D09G126500 Gossypium hirsutum HOM05D004807 ORTHO05D005915 0.0e+00 1119.8 1407 47.5
Sabra06G0151700 Salix brachista HOM05D004807 ORTHO05D005915 0.0e+00 1117.8 1448 47.3
COL.COLO4_29436 Corchorus olitorius HOM05D004807 ORTHO05D005915 0.0e+00 1115.5 1408 46.8
Lsat_1_v5_gn_2_58060 Lactuca sativa HOM05D004807 ORTHO05D005915 0.0e+00 1109.7 1365 48.7
Hund19221 Selenicereus undatus HOM05D004807 ORTHO05D005915 0.0e+00 1101.3 1408 47.4
RcHm_v2.0_Chr3g0478641 Rosa chinensis HOM05D004807 ORTHO05D005915 0.0e+00 1098.6 1408 47.1
FvH4_6g21460 Fragaria vesca HOM05D004807 ORTHO05D005915 0.0e+00 1097.8 1409 46.7
FAN02G2347 Fragaria x ananassa HOM05D004807 ORTHO05D005915 0.0e+00 1096.6 1409 46.5
MSTRG.19928 Avicennia marina HOM05D004807 ORTHO05D005915 0.0e+00 1090.9 1288 49.0
PGR142G0165 Punica granatum HOM05D004807 ORTHO05D005915 0.0e+00 1089.7 1400 46.4
Lalb_Chr25g0287671 Lupinus albus HOM05D004807 ORTHO05D005915 0.0e+00 1083.6 1404 46.7
Rhsim03G0002400 Rhododendron simsii HOM05D004807 ORTHO05D005915 0.0e+00 1082.8 1492 45.8
FAN14G4845 Fragaria x ananassa HOM05D004807 ORTHO05D005915 0.0e+00 1082.0 1431 45.9
Aqoxy1G00442 Aquilegia oxysepala HOM05D004807 ORTHO05D005915 0.0e+00 1078.9 1422 46.0
arahy.Tifrunner.gnm1.ann1.4PIV4R Arachis hypogaea HOM05D004807 ORTHO05D005915 0.0e+00 1075.5 1404 45.9
VMungo1383G3705 Vigna mungo HOM05D004807 ORTHO05D005915 0.0e+00 1075.5 1384 46.4
FAN09G2962 Fragaria x ananassa HOM05D004807 ORTHO05D005915 6.9e-312 1073.9 1431 45.6
FAN05G3467 Fragaria x ananassa HOM05D004807 ORTHO05D005915 4.8e-311 1071.2 1465 44.9
arahy.Tifrunner.gnm1.ann1.14IR3Z Arachis hypogaea HOM05D004807 ORTHO05D005915 2.6e-309 1065.4 1405 45.6
Phvul.001G200200 Phaseolus vulgaris HOM05D004807 ORTHO05D005915 7.5e-309 1063.9 1383 46.2
THA.LOC104826780 Tarenaya hassleriana HOM05D004807 ORTHO05D005915 9.2e-307 1057.0 1383 46.5
Ca_09097_v3 Cicer arietinum L. HOM05D004807 ORTHO05D005915 2.0e-306 1055.8 1397 45.5
DCAR_017047 Daucus carota HOM05D004807 ORTHO05D005915 7.8e-306 1053.9 1396 46.1
Sc19g0006260 Simmondsia chinensis HOM05D004807 ORTHO05D005915 2.3e-305 1052.4 1406 45.7
HanXRQChr14g0438891 Helianthus annuus HOM05D004807 ORTHO05D005915 7.3e-304 1047.3 1361 46.2
Lj1g0016427 Lotus japonicus HOM05D004807 ORTHO05D005915 9.5e-304 1047.0 1384 45.8
FAN05G1427 Fragaria x ananassa HOM05D004807 ORTHO05D005915 3.6e-303 1045.0 1405 45.1
Thhalv10019900m.g Eutrema salsugineum HOM05D004807 ORTHO05D005915 8.0e-303 1043.9 1352 46.0
Glyma.03G206600 Glycine max HOM05D004807 ORTHO05D005915 4.0e-302 1041.6 1348 46.1
vmacro12557 Vaccinium macrocarpon HOM05D004807 ORTHO05D005915 1.2e-301 1040.0 1326 47.4
Oeu046734.3 Olea europaea HOM05D004807 ORTHO05D005915 4.4e-301 1038.1 1188 50.4
BcaB06g25560 Brassica carinata HOM05D004807 ORTHO05D005915 1.3e-300 1036.6 1371 45.6
Sp3g10180 Schrenkiella parvula HOM05D004807 ORTHO05D005915 4.9e-300 1034.6 1348 45.5
BcaC05g29309 Brassica carinata HOM05D004807 ORTHO05D005915 8.3e-300 1033.9 1339 45.9
EL10Ac3g06848 Beta vulgaris HOM05D004807 ORTHO05D005915 9.2e-299 1030.4 1416 44.2
Medtr7g107350 Medicago truncatula HOM05D004807 ORTHO05D005915 2.0e-298 1029.2 1403 44.8
PSO528G0235 Papaver somniferum HOM05D004807 ORTHO05D005915 6.0e-298 1027.7 1389 45.1
Carub.0003s1129 Capsella rubella HOM05D004807 ORTHO05D005915 7.8e-298 1027.3 1379 45.5
BolC5t34266H Brassica oleracea HOM05D004807 ORTHO05D005915 1.3e-297 1026.5 1347 45.7
Glyma.19G204200 Glycine max HOM05D004807 ORTHO05D005915 3.0e-297 1025.4 1403 44.7
PSO170G3481 Papaver somniferum HOM05D004807 ORTHO05D005915 8.6e-297 1023.8 1386 44.9
Psat0s2035g0040 Pisum sativum HOM05D004807 ORTHO05D005915 1.5e-296 1023.1 1403 44.3
A05p37420 Brassica napus HOM05D004807 ORTHO05D005915 2.1e-295 1019.2 1348 45.4
TPR.G32304 Trifolium pratense HOM05D004807 ORTHO05D005915 8.0e-295 1017.3 1404 44.6
C05p55980 Brassica napus HOM05D004807 ORTHO05D005915 1.8e-294 1016.1 1347 45.4
AT3G11960 Arabidopsis thaliana HOM05D004807 ORTHO05D005915 9.8e-293 1010.4 1360 44.7
BcaC01g04068 Brassica carinata HOM05D004807 ORTHO05D005915 1.9e-291 1006.1 1331 45.8
A03p37390 Brassica napus HOM05D004807 ORTHO05D005915 1.3e-289 1000.0 1341 45.3
C03p45390 Brassica napus HOM05D004807 ORTHO05D005915 1.7e-289 999.6 1337 45.5
BcaB04g18703 Brassica carinata HOM05D004807 ORTHO05D005915 5.0e-289 998.0 1373 43.6
BraA03t12900Z Brassica rapa HOM05D004807 ORTHO05D005915 3.3e-288 995.3 1359 44.8
BolC3t16806H Brassica oleracea HOM05D004807 ORTHO05D005915 9.5e-288 993.8 1347 45.1
BraA05t22540Z Brassica rapa HOM05D004807 ORTHO05D005915 4.4e-285 984.9 1316 45.1
Ah.04g153050 Amaranthus hybridus HOM05D004807 ORTHO05D005915 4.9e-284 981.5 1404 43.7
AUR62015288 Chenopodium quinoa HOM05D004807 ORTHO05D005915 4.1e-283 978.4 1372 43.1
ECA238G3196 Erigeron canadensis HOM05D004807 ORTHO05D005915 6.0e-282 974.5 1250 46.2
Eucgr.K01882 Eucalyptus grandis HOM05D004807 ORTHO05D005915 2.5e-280 969.1 1288 45.3
Aa31LG3G5560 Aethionema arabicum HOM05D004807 ORTHO05D005915 8.1e-279 964.1 1396 42.3
CsaV3_7G005530 Cucumis sativus L. HOM05D004807 ORTHO05D005915 2.7e-274 949.1 1150 49.1
AUR62032732 Chenopodium quinoa HOM05D004807 ORTHO05D005915 3.3e-272 942.2 1340 42.5
AL3G23560 Arabidopsis lyrata HOM05D004807 ORTHO05D005915 9.0e-270 934.1 1270 44.4
Actinidia22072 Actinidia chinensis HOM05D004807 ORTHO05D005915 9.9e-269 930.6 612 75.3
ATR0665G460 Amborella trichopoda HOM05D004807 ORTHO05D005915 1.9e-264 916.4 1413 41.2
AUR62026870 Chenopodium quinoa HOM05D004807 ORTHO05D005915 5.6e-256 888.3 1361 40.7
Cpa.g.sc85.18 Carica papaya HOM05D004807 ORTHO05D005915 1.7e-252 876.7 688 66.4
MELO3C009593.2 Cucumis melo HOM05D004807 ORTHO05D005915 3.5e-250 869.0 631 69.1
CARHR086510 Cardamine hirsuta HOM05D004807 ORTHO05D005915 2.5e-243 846.3 1189 43.1
CSS0045552 Camellia sinensis var. sinensis HOM05D004807 ORTHO05D005915 6.9e-230 801.6 1086 45.0
SEGI_25187 Sequoiadendron giganteum HOM05D004807 ORTHO05D005915 8.0e-218 761.5 1362 37.3
Ciclev10011630m.g Citrus clementina HOM05D004807 ORTHO05D005915 9.1e-214 748.0 482 77.6
Os07g0203700 Oryza sativa ssp. japonica HOM05D004807 ORTHO05D005915 3.6e-210 736.1 1341 38.3
Zm00001eb302880 Zea mays HOM05D004807 ORTHO05D005915 2.3e-209 733.4 1353 37.5
CDE05G3662 Ceratophyllum demersum HOM05D004807 ORTHO05D005915 5.7e-208 728.8 1356 36.4
Actinidia01589 Actinidia chinensis HOM05D004807 ORTHO05D005915 6.3e-191 672.2 480 71.2
Pp3c24_19520 Physcomitrium patens HOM05D004807 ORTHO05D005915 6.8e-177 625.5 1398 33.1
Mapoly0005s0200 Marchantia polymorpha HOM05D004807 ORTHO05D005915 7.3e-171 605.5 1377 32.7
HPP92_017552 Vanilla planifolia HOM05D004807 ORTHO05D005915 3.1e-169 600.1 699 50.2
RhsimUnG0014500 Rhododendron simsii HOM05D004807 ORTHO05D005915 1.3e-167 594.7 369 80.8
SHI30024 Sapria himalayana HOM05D004807 ORTHO05D005915 1.1e-166 591.7 1100 37.3
Dinv25022 Davidia involucrata HOM05D004807 ORTHO05D005915 5.4e-166 589.3 399 74.9
SMO276G0043 Selaginella moellendorffii HOM05D004807 ORTHO05D005915 3.4e-152 543.5 1323 32.4
Haze_20076 Corylus avellana HOM05D004807 ORTHO05D005915 4.4e-152 543.1 959 38.0
FAN14G5853 Fragaria x ananassa HOM05D004807 ORTHO05D005915 4.0e-137 493.4 950 38.3
Ciclev10011020m.g Citrus clementina HOM05D004807 ORTHO05D005915 9.0e-129 465.7 924 35.8
unitig_0.g511 Utricularia gibba HOM05D004807 ORTHO05D005915 5.7e-115 419.9 918 33.9
AagrBONN_evm.TU.Sc2ySwM_228.687 Anthoceros agrestis HOM05D004807 ORTHO05D005915 8.2e-114 416.0 533 46.0
Actinidia22073 Actinidia chinensis HOM05D004807 ORTHO05D005915 7.7e-112 409.5 377 59.2
Lsat_1_v5_gn_3_12560 Lactuca sativa HOM05D004807 ORTHO05D005915 4.5e-104 383.6 289 67.1
unitig_0.g510 Utricularia gibba HOM05D004807 ORTHO05D005915 6.8e-92 343.2 277 63.5
Dinv25024 Davidia involucrata HOM05D004807 ORTHO05D005915 4.1e-81 307.4 263 63.9
Cpa.g.sc85.17 Carica papaya HOM05D004807 ORTHO05D005915 1.3e-71 275.8 374 47.1
CBR_g51523 Chara braunii HOM05D000019 ORTHO05D000048 5.8e-67 260.4 582 33.8
Actinidia27127 Actinidia chinensis HOM05D004807 ORTHO05D005915 9.8e-67 259.6 176 75.6
Psat7g139360 Pisum sativum HOM05D004807 ORTHO05D005915 1.4e-60 239.2 313 44.7
CSS0022615 Camellia sinensis var. sinensis HOM05D004807 ORTHO05D005915 1.6e-53 215.7 161 72.7
AagrBONN_evm.TU.Sc2ySwM_228.684 Anthoceros agrestis HOM05D004807 ORTHO05D005915 5.2e-52 210.7 268 45.5
Haze_20075 Corylus avellana HOM05D004807 ORTHO05D005915 9.6e-46 189.9 159 62.9
AagrBONN_evm.TU.Sc2ySwM_228.688 Anthoceros agrestis HOM05D004807 ORTHO05D005915 1.2e-43 183.0 232 44.0
TPR.G10577 Trifolium pratense HOM05D004807 ORTHO05D005915 1.6e-37 162.5 202 48.0
Lsat_1_v5_gn_6_720 Lactuca sativa HOM05D004807 ORTHO05D005915 2.1e-37 162.2 112 71.4
EL10Ac4g10205 Beta vulgaris HOM05D000020 ORTHO05D027019 6.2e-37 160.6 129 65.1
CSS0049837 Camellia sinensis var. sinensis HOM05D004807 ORTHO05D005915 8.1e-37 160.2 103 80.6
unitig_0.g509 Utricularia gibba HOM05D004807 ORTHO05D005915 8.1e-29 133.7 131 57.3
Psat1g163960 Pisum sativum HOM05D004807 ORTHO05D005915 1.7e-26 125.9 136 44.9
Psat3g169960 Pisum sativum HOM05D002132 ORTHO05D009901 9.0e-20 103.6 270 28.5
vmacro12556 Vaccinium macrocarpon HOM05D004807 ORTHO05D005915 1.0e-18 100.1 68 79.4
Cfa020119 Carpinus fangiana HOM05D004807 ORTHO05D021976 4.2e-17 94.7 64 67.2
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 6.0e-16 90.9 98 52.0
SHI30022 Sapria himalayana HOM05D004807 ORTHO05D005915 1.3e-15 89.7 102 49.0
arahy.Tifrunner.gnm1.ann1.WKN0A4 Arachis hypogaea HOM05D002533 ORTHO05D002855 6.7e-15 87.4 219 30.6
RcHm_v2.0_Chr3g0478521 Rosa chinensis HOM05D004807 ORTHO05D005915 1.5e-14 86.3 55 78.2
AUR62030183 Chenopodium quinoa HOM05D000826 ORTHO05D000250 3.3e-14 85.1 54 72.2
Haze_26580 Corylus avellana HOM05D003635 ORTHO05D004283 6.3e-13 80.9 535 22.2
Dinv25023 Davidia involucrata HOM05D004807 ORTHO05D005915 4.5e-11 74.7 195 31.8
Hma1.2p1_0516F.1_g170580 Hydrangea macrophylla HOM05D004807 ORTHO05D005915 3.5e-08 65.1 59 59.3
QL10p013792 Quercus lobata HOM05D004807 ORTHO05D005915 1.8e-07 62.8 67 49.3
MCO03G129 Micromonas commoda HOM05D004807 ORTHO05D005915 2.3e-07 62.4 123 31.7
MCO14G333 Micromonas commoda HOM05D003635 ORTHO05D004283 3.0e-07 62.0 138 31.2
PRCOL_00000086 Prasinoderma coloniale HOM05D003635 ORTHO05D004283 3.0e-07 62.0 152 30.3
SHI30026 Sapria himalayana HOM05D004807 ORTHO05D005915 3.0e-07 62.0 104 37.5
TPR.G10589 Trifolium pratense HOM05D004807 ORTHO05D005915 3.9e-07 61.6 49 57.1
Prupe.2G226500 Prunus persica HOM05D003635 ORTHO05D004283 5.7e-06 57.8 138 28.3
SMO116G0157 Selaginella moellendorffii HOM05D003635 ORTHO05D004283 5.7e-06 57.8 138 28.3


User provided reference genes

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