Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001070g0110 Nicotiana tabacum HOM05D003504 ORTHO05D004006 0.0e+00 1273.1 638 100.0
Nitab4.5_0000348g0160 Nicotiana tabacum HOM05D003504 ORTHO05D004006 0.0e+00 1160.2 609 96.1
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 0.0e+00 1098.6 609 90.3
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 7.3e-310 1066.6 609 87.4
Peaxi162Scf01205g00192 Petunia axillaris HOM05D003504 ORTHO05D004006 5.5e-297 1023.8 582 89.0
Solyc08g016070.3 Solanum lycopersicum HOM05D003504 ORTHO05D004006 7.0e-268 927.2 528 88.8
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 1.1e-260 903.3 613 74.1
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 1.8e-260 902.5 617 74.4
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 4.5e-259 897.9 614 73.1
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 1.2e-254 883.2 608 73.2
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 7.5e-254 880.6 613 72.4
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 2.5e-249 865.5 614 72.1
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 5.5e-249 864.4 618 73.8
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 3.7e-245 851.7 590 73.4
CSS0042974 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 4.1e-244 848.2 583 73.8
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 1.5e-241 839.7 606 70.0
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 5.6e-241 837.8 612 71.6
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 2.8e-240 835.5 613 69.3
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 3.6e-240 835.1 610 70.3
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 3.0e-239 832.0 612 68.5
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 1.5e-238 829.7 623 69.3
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 4.4e-238 828.2 610 68.5
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 3.7e-237 825.1 608 69.7
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 8.3e-237 823.9 607 69.5
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 1.4e-236 823.2 620 68.9
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 9.2e-236 820.5 610 67.9
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 9.2e-236 820.5 636 67.1
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 1.2e-235 820.1 614 68.9
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.2e-235 820.1 610 68.0
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 5.0e-234 814.7 620 67.3
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 2.5e-233 812.4 615 66.3
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 4.3e-233 811.6 610 70.0
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 9.5e-233 810.4 612 68.3
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 6.8e-231 804.3 608 68.1
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 4.4e-230 801.6 618 68.0
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 7.0e-228 794.3 588 69.0
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 2.0e-227 792.7 589 70.3
Nn1g07188 Nelumbo nucifera HOM05D003504 ORTHO05D004006 1.0e-226 790.4 617 65.3
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 1.0e-226 790.4 614 66.3
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 2.3e-226 789.3 618 64.4
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 3.9e-226 788.5 611 64.5
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 5.0e-226 788.1 588 69.0
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 5.6e-225 784.6 588 69.0
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 7.3e-225 784.3 607 68.0
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 7.3e-225 784.3 590 68.8
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 4.7e-224 781.6 584 69.0
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 1.1e-223 780.4 590 69.0
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 1.8e-223 779.6 620 65.2
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 2.3e-223 779.2 588 67.7
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 6.8e-223 777.7 606 67.0
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 1.2e-222 776.9 586 68.1
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 1.5e-222 776.5 588 68.4
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 1.5e-222 776.5 613 64.9
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 2.0e-222 776.2 590 68.5
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 2.6e-222 775.8 590 68.5
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 3.4e-222 775.4 613 65.1
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 9.9e-222 773.9 586 67.7
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 4.9e-221 771.5 588 68.2
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 1.4e-220 770.0 588 68.4
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 1.4e-220 770.0 586 67.9
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.9e-220 769.6 588 68.2
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 9.2e-220 767.3 603 67.0
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 2.1e-219 766.1 589 67.7
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 1.0e-218 763.8 603 66.8
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 2.3e-218 762.7 614 64.2
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 6.6e-218 761.1 588 67.5
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 1.1e-217 760.4 614 64.3
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 1.9e-217 759.6 589 67.7
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 2.5e-217 759.2 616 64.1
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 3.3e-217 758.8 590 67.8
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 2.1e-216 756.1 590 65.1
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 6.2e-216 754.6 608 64.1
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 1.1e-215 753.8 614 63.7
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 6.8e-215 751.1 621 65.2
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 2.0e-214 749.6 611 63.7
SEGI_32993 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 5.8e-214 748.0 616 62.0
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 5.8e-214 748.0 616 62.0
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 9.9e-214 747.3 590 66.6
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 9.9e-214 747.3 614 63.8
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 1.3e-213 746.9 611 63.5
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 2.2e-213 746.1 603 63.8
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 2.2e-213 746.1 591 64.5
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 3.8e-213 745.3 605 64.0
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 1.4e-212 743.4 611 63.0
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 2.4e-212 742.7 607 63.1
vmacro15989 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 3.2e-212 742.3 536 71.5
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 7.1e-212 741.1 614 63.2
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 3.0e-210 735.7 603 64.8
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 6.6e-210 734.6 608 62.8
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 5.6e-209 731.5 599 63.3
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 2.1e-208 729.6 599 63.3
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 1.4e-204 716.8 609 62.2
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 5.6e-201 704.9 587 63.5
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.3e-200 703.7 659 59.2
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 8.4e-197 691.0 603 61.2
CDE09G0759 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 5.4e-196 688.3 616 59.7
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.6e-195 686.8 588 62.2
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 2.7e-195 686.0 534 67.2
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 3.9e-194 682.2 612 60.3
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 8.7e-186 654.4 606 57.1
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 1.5e-185 653.7 536 65.5
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 5.3e-175 618.6 591 57.2
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 9.4e-172 607.8 616 53.2
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 3.7e-168 595.9 619 51.5
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 8.5e-165 584.7 589 54.5
Sc15g0007430 Simmondsia chinensis HOM05D003504 ORTHO05D004006 1.1e-159 567.8 478 63.0
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.0e-157 561.2 635 49.3
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 8.5e-157 558.1 630 48.4
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.4e-154 550.8 645 47.6
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.1e-153 547.7 616 49.0
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 4.8e-152 542.3 613 48.5
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 3.1e-151 539.7 641 47.6
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 1.6e-150 537.3 609 50.1
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 1.0e-138 498.0 590 46.4
Ca_24186_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 1.4e-138 497.7 453 60.7
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 1.9e-124 450.7 335 70.1
Zm00001eb391790 Zea mays HOM05D003504 ORTHO05D004006 1.5e-116 424.5 482 51.2
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 3.1e-114 416.8 338 63.9
Lj6C705G6 Lonicera japonica HOM05D003504 ORTHO05D004006 3.6e-99 366.7 369 54.7
Zm00001eb265730 Zea mays HOM05D003504 ORTHO05D004006 2.3e-93 347.4 359 52.9
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 8.2e-67 259.2 541 34.6
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 3.4e-65 253.8 228 60.1
RcHm_v2.0_Chr5g0024291 Rosa chinensis HOM05D003504 ORTHO05D004006 1.1e-60 238.8 154 74.0
Ca_24185_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 5.7e-60 236.5 160 70.6
Zm00001eb110210 Zea mays HOM05D003504 ORTHO05D004006 4.2e-47 193.7 153 66.0
Zm00001eb113250 Zea mays HOM05D003504 ORTHO05D004006 1.5e-41 175.3 108 76.9
Zm00001eb389000 Zea mays HOM05D001423 ORTHO05D004006 2.3e-37 161.4 147 61.2
Zm00001eb265700 Zea mays HOM05D003504 ORTHO05D004006 6.7e-37 159.8 189 51.9
Zm00001eb145990 Zea mays HOM05D003504 ORTHO05D004006 2.0e-33 148.3 134 59.7
Psat0s1032g0040 Pisum sativum HOM05D003504 ORTHO05D004006 1.2e-30 139.0 83 77.1
Cpa.g.sc34.44 Carica papaya HOM05D003504 ORTHO05D004006 3.5e-25 120.9 108 61.1
SHI02263 Sapria himalayana HOM05D003504 ORTHO05D004006 8.8e-21 106.3 99 56.6
CBR_g22316 Chara braunii HOM05D003504 ORTHO05D004006 9.8e-20 102.8 159 34.0
SHI02262 Sapria himalayana HOM05D003504 ORTHO05D004006 1.3e-19 102.4 92 57.6
Zm00001eb412430 Zea mays HOM05D003504 ORTHO05D004006 1.7e-16 92.0 88 56.8
Zm00001eb373750 Zea mays HOM05D009386 ORTHO05D011419 2.3e-16 91.7 60 73.3
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 3.6e-14 84.3 56 73.2
Zm00001eb292470 Zea mays HOM05D001423 ORTHO05D000709 1.4e-13 82.4 176 35.2
Zm00001eb016900 Zea mays HOM05D009386 ORTHO05D011419 3.7e-11 74.3 51 68.6
SHI02260 Sapria himalayana HOM05D003504 ORTHO05D004006 1.8e-10 72.0 53 58.5
SHI02261 Sapria himalayana HOM05D003504 ORTHO05D004006 3.2e-10 71.2 71 46.5
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 9.2e-10 69.7 46 69.6
ClCG03G013860 Citrullus lanatus HOM05D003504 ORTHO05D004006 1.3e-08 65.9 71 49.3
SEGI_08102 Sequoiadendron giganteum HOM05D017310 ORTHO05D004006 1.5e-07 62.4 82 42.7
Nitab4.5_0004322g0030 Nicotiana tabacum HOM05D001849 ORTHO05D004075 3.3e-07 61.2 34 82.4
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 5.6e-07 60.5 30 86.7
Cpa.g.sc3151.1 Carica papaya HOM05D003504 ORTHO05D004006 4.7e-06 57.4 86 44.2
SEGI_26038 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 4.7e-06 57.4 49 57.1


User provided reference genes

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