Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000935g0090 Nicotiana tabacum HOM05D006844 ORTHO05D008504 2.7e-308 1061.6 726 100.0
Nitab4.5_0001031g0200 Nicotiana tabacum HOM05D006844 ORTHO05D008504 7.2e-253 877.5 748 85.6
CAN.G473.42 Capsicum annuum HOM05D006844 ORTHO05D008504 2.7e-236 822.4 751 82.0
PGSC0003DMG400012620 Solanum tuberosum HOM05D006844 ORTHO05D008504 3.5e-215 752.3 749 80.0
Sopen02g038250 Solanum pennellii HOM05D006844 ORTHO05D008504 1.6e-207 726.9 752 78.1
Peaxi162Scf00420g00214 Petunia axillaris HOM05D006844 ORTHO05D008504 9.6e-181 637.9 661 77.3
Solyc02g093620.2 Solanum lycopersicum HOM05D006844 ORTHO05D008504 7.2e-144 515.4 553 82.8
Dinv33400 Davidia involucrata HOM05D006844 ORTHO05D008504 8.2e-140 501.9 435 59.8
Prupe.2G095300 Prunus persica HOM05D006844 ORTHO05D008504 2.0e-138 497.3 527 52.6
Cc07_g00220 Coffea canephora HOM05D006844 ORTHO05D008504 3.6e-135 486.5 771 61.0
SGA_v2.0_scaffold135G34928 Striga asiatica HOM05D006844 ORTHO05D008504 1.7e-132 477.6 542 50.9
TWI12G0359 Tripterygium wilfordii HOM05D006844 ORTHO05D008504 9.1e-131 471.9 755 50.2
MSTRG.24057 Avicennia marina HOM05D006844 ORTHO05D008504 1.0e-129 468.4 678 65.3
Cfa007302 Carpinus fangiana HOM05D006844 ORTHO05D008504 3.2e-128 463.4 670 55.4
Manes.17G108800 Manihot esculenta HOM05D006844 ORTHO05D008504 7.5e-125 452.2 770 56.5
Potri.017G070800 Populus trichocarpa HOM05D006844 ORTHO05D008504 3.7e-124 449.9 769 58.1
Haze_14791 Corylus avellana HOM05D006844 ORTHO05D008504 5.9e-122 442.6 669 53.4
Sabra17G0063000 Salix brachista HOM05D006844 ORTHO05D008504 1.7e-121 441.0 772 56.0
vmacro05902 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 1.7e-121 441.0 465 53.1
Sabra06G0144800 Salix brachista HOM05D006844 ORTHO05D008504 2.9e-121 440.3 771 55.6
Migut.H00039 Erythranthe guttata HOM05D006844 ORTHO05D008504 3.8e-121 439.9 674 64.5
TAR374G0379 Trochodendron aralioides HOM05D006844 ORTHO05D008504 1.9e-120 437.6 438 53.7
SalBow1G4663 Salvia bowleyana HOM05D006844 ORTHO05D008504 9.5e-120 435.3 675 61.3
FvH4_7g06820 Fragaria vesca HOM05D006844 ORTHO05D008504 4.0e-118 429.9 517 48.2
CSS0048025 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 1.5e-117 427.9 529 46.1
CiPaw.03G048400 Carya illinoinensis HOM05D006844 ORTHO05D008504 2.0e-117 427.6 672 62.8
CSS0042583 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 2.6e-117 427.2 529 45.9
DCAR_011279 Daucus carota HOM05D006844 ORTHO05D008504 1.4e-115 421.4 669 61.9
TAR622G0321 Trochodendron aralioides HOM05D006844 ORTHO05D008504 1.4e-115 421.4 438 52.5
Hma1.2p1_0818F.1_g223470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 4.1e-115 419.9 366 58.2
Ciclev10014357m.g Citrus clementina HOM05D006844 ORTHO05D008504 9.2e-115 418.7 772 57.5
Duzib147G1239 Durio zibethinus HOM05D006844 ORTHO05D008504 9.2e-115 418.7 765 56.3
PGR083G0468 Punica granatum HOM05D006844 ORTHO05D008504 3.5e-114 416.8 460 50.0
AUR62035998 Chenopodium quinoa HOM05D006844 ORTHO05D008504 7.8e-114 415.6 541 45.5
Nn4g22496 Nelumbo nucifera HOM05D006844 ORTHO05D008504 1.0e-113 415.2 763 57.9
Gohir.D04G080600 Gossypium hirsutum HOM05D006844 ORTHO05D008504 1.3e-113 414.8 755 57.6
Gorai.012G091600 Gossypium raimondii HOM05D006844 ORTHO05D008504 8.6e-113 412.1 755 57.6
Atru.chr6.2466 Acer truncatum HOM05D006844 ORTHO05D008504 1.1e-112 411.8 760 55.9
MD17G1020100 Malus domestica HOM05D006844 ORTHO05D008504 1.1e-112 411.8 439 50.6
Lj1g0000789 Lotus japonicus HOM05D006844 ORTHO05D008504 1.9e-112 411.0 589 65.5
Sc07g0004300 Simmondsia chinensis HOM05D006844 ORTHO05D008504 1.9e-112 411.0 762 51.8
Thecc.04G024500 Theobroma cacao HOM05D006844 ORTHO05D008504 2.5e-112 410.6 773 55.6
Eucgr.J02268 Eucalyptus grandis HOM05D006844 ORTHO05D008504 3.3e-112 410.2 448 49.6
FAN01G2612 Fragaria x ananassa HOM05D006844 ORTHO05D008504 5.6e-112 409.5 377 56.0
MD09G1019500 Malus domestica HOM05D006844 ORTHO05D008504 5.6e-112 409.5 436 50.0
HanXRQChr07g0199131 Helianthus annuus HOM05D006844 ORTHO05D008504 7.3e-112 409.1 424 51.2
AT3G46610 Arabidopsis thaliana HOM05D006844 ORTHO05D008504 9.5e-112 408.7 351 59.5
QL02p073443 Quercus lobata HOM05D006844 ORTHO05D008504 3.6e-111 406.8 435 50.8
Rhsim10G0012800 Rhododendron simsii HOM05D006844 ORTHO05D008504 1.4e-110 404.8 776 57.0
AL6G25060 Arabidopsis lyrata HOM05D006844 ORTHO05D008504 1.8e-110 404.4 353 58.9
Hma1.2p1_1484F.1_g286480 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 2.3e-110 404.1 783 50.4
MBI13_g29568_MAGBIO Magnolia biondii HOM05D006844 ORTHO05D008504 3.0e-110 403.7 522 46.2
Actinidia36147 Actinidia chinensis HOM05D006844 ORTHO05D008504 6.8e-110 402.5 674 58.8
arahy.Tifrunner.gnm1.ann1.QHJM8I Arachis hypogaea HOM05D006844 ORTHO05D008504 6.8e-110 402.5 588 67.0
MELO3C014826.2 Cucumis melo HOM05D006844 ORTHO05D008504 6.8e-110 402.5 428 51.6
PSO478G2097 Papaver somniferum HOM05D006844 ORTHO05D008504 8.9e-110 402.1 669 57.8
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 2.6e-109 400.6 379 53.8
COL.COLO4_29236 Corchorus olitorius HOM05D006844 ORTHO05D008504 3.4e-109 400.2 774 56.8
Hma1.2p1_1484F.1_g286470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 5.7e-109 399.4 770 36.2
Hma1.2p1_1484F.1_g286476 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 5.7e-109 399.4 770 36.2
PSO017G3485 Papaver somniferum HOM05D006844 ORTHO05D008504 7.5e-109 399.1 669 57.5
RcHm_v2.0_Chr1g0336521 Rosa chinensis HOM05D006844 ORTHO05D008504 1.3e-108 398.3 513 45.8
ClCG05G013040 Citrullus lanatus HOM05D006844 ORTHO05D008504 1.7e-108 397.9 462 48.3
FAN03G0177 Fragaria x ananassa HOM05D006844 ORTHO05D008504 3.7e-108 396.7 356 56.5
Glyma.16G066300 Glycine max HOM05D006844 ORTHO05D008504 7.8e-106 389.0 649 60.6
FAN10G3353 Fragaria x ananassa HOM05D006844 ORTHO05D008504 2.3e-105 387.5 356 55.3
Ca_03833_v3 Cicer arietinum L. HOM05D006844 ORTHO05D008504 6.6e-105 386.0 530 43.6
Sp6g29690 Schrenkiella parvula HOM05D006844 ORTHO05D008504 1.1e-104 385.2 518 44.8
Sed0025706 Sechium edule HOM05D006844 ORTHO05D008504 1.5e-104 384.8 381 52.8
Hund11892 Selenicereus undatus HOM05D006844 ORTHO05D008504 1.5e-104 384.8 375 53.1
CARHR198970 Cardamine hirsuta HOM05D006844 ORTHO05D008504 9.5e-104 382.1 383 52.7
Glyma.19G080500 Glycine max HOM05D006844 ORTHO05D008504 4.7e-103 379.8 604 64.7
AUR62041622 Chenopodium quinoa HOM05D006844 ORTHO05D008504 1.4e-102 378.3 537 43.0
Ah.10g033120 Amaranthus hybridus HOM05D001127 ORTHO05D002230 1.8e-102 377.9 396 51.5
vmacro05904 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 1.8e-102 377.9 599 63.9
Thhalv10015672m.g Eutrema salsugineum HOM05D006844 ORTHO05D008504 2.3e-102 377.5 386 53.1
BcaB01g06378 Brassica carinata HOM05D006844 ORTHO05D008504 3.1e-102 377.1 367 54.5
THA.LOC104821106 Tarenaya hassleriana HOM05D006844 ORTHO05D008504 3.1e-102 377.1 371 54.2
Phvul.008G145600 Phaseolus vulgaris HOM05D006844 ORTHO05D008504 4.0e-102 376.7 613 63.6
Aqoxy3G01340 Aquilegia oxysepala HOM05D006844 ORTHO05D008504 1.2e-101 375.2 764 52.6
VMungo1080G0705 Vigna mungo HOM05D006844 ORTHO05D008504 3.4e-101 373.6 639 60.9
Carub.0005s1288 Capsella rubella HOM05D006844 ORTHO05D008504 7.5e-101 372.5 359 53.8
ATR0824G256 Amborella trichopoda HOM05D006844 ORTHO05D008504 1.7e-100 371.3 367 52.3
Lj7P604T32 Lonicera japonica HOM05D006844 ORTHO05D008504 1.7e-100 371.3 511 71.4
CsaV3_3G027490 Cucumis sativus L. HOM05D006844 ORTHO05D008504 2.2e-100 370.9 338 55.9
Gohir.A05G342700 Gossypium hirsutum HOM05D006844 ORTHO05D008504 9.2e-99 365.5 555 67.9
Lsat_1_v5_gn_2_93460 Lactuca sativa HOM05D006844 ORTHO05D008504 1.2e-98 365.2 329 55.6
HPP92_010824 Vanilla planifolia HOM05D006844 ORTHO05D008504 2.7e-98 364.0 377 49.1
Aa31LG11G15140 Aethionema arabicum HOM05D006844 ORTHO05D008504 3.5e-98 363.6 354 53.1
CANSAT64G2991 Cannabis sativa HOM05D006844 ORTHO05D008504 6.6e-97 359.4 521 44.1
BcaB01g05117 Brassica carinata HOM05D006844 ORTHO05D008504 8.1e-95 352.4 363 51.5
C03p07580 Brassica napus HOM05D006844 ORTHO05D008504 8.1e-95 352.4 363 51.5
Lalb_Chr14g0362981 Lupinus albus HOM05D006844 ORTHO05D008504 3.1e-94 350.5 367 49.6
BraA03t09988Z Brassica rapa HOM05D006844 ORTHO05D008504 1.5e-93 348.2 361 51.2
BolC3t13259H Brassica oleracea HOM05D006844 ORTHO05D008504 2.6e-93 347.4 363 51.5
Os12g0283900 Oryza sativa ssp. japonica HOM05D006844 ORTHO05D008504 3.4e-93 347.1 376 48.7
A03p06560 Brassica napus HOM05D006844 ORTHO05D008504 4.4e-93 346.7 361 50.7
TPR.G1077 Trifolium pratense HOM05D006844 ORTHO05D008504 1.9e-91 341.3 353 48.2
Psat3g169440 Pisum sativum HOM05D006844 ORTHO05D008504 5.4e-91 339.7 510 39.6
CDE09G1288 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 1.6e-90 338.2 474 42.2
CDE02G4692 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 2.5e-88 330.9 442 43.7
Hma1.2p1_0818F.1_g223460 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 3.4e-85 320.5 270 59.6
Zm00001eb273000 Zea mays HOM05D006844 ORTHO05D008504 3.5e-82 310.5 267 56.2
BcaB01g06331 Brassica carinata HOM05D006844 ORTHO05D008504 7.8e-82 309.3 364 48.9
Oeu023834.1 Olea europaea HOM05D006844 ORTHO05D008504 8.1e-79 299.3 514 47.3
GSVIVG01003980001 Vitis vinifera HOM05D006844 ORTHO05D008504 2.3e-57 228.0 285 47.4
Pp3c26_10760 Physcomitrium patens HOM05D006844 ORTHO05D008504 1.1e-43 182.6 470 27.7
AagrBONN_evm.TU.Sc2ySwM_117.3382 Anthoceros agrestis HOM05D006844 ORTHO05D008504 1.8e-38 165.2 179 43.6
Mapoly0038s0061 Marchantia polymorpha HOM05D006844 ORTHO05D008504 1.8e-30 138.7 398 25.9
SMO367G0130 Selaginella moellendorffii HOM05D006844 ORTHO05D008504 1.3e-23 115.9 168 37.5
BcaB01g05118 Brassica carinata HOM05D006844 ORTHO05D008504 1.2e-21 109.4 141 44.7
AUR62025550 Chenopodium quinoa HOM05D006844 ORTHO05D008504 3.5e-21 107.8 60 81.7
EL10Ac2g03526 Beta vulgaris HOM05D006844 ORTHO05D008504 6.3e-15 87.0 234 26.5
SalBow1G4926 Salvia bowleyana HOM05D006844 ORTHO05D008504 6.5e-12 77.0 59 57.6
Cc01_g05550 Coffea canephora HOM05D000001 ORTHO05D000003 2.7e-10 71.6 303 21.1
AagrBONN_evm.TU.Sc2ySwM_344.3530 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.7e-10 70.9 293 22.9
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 1.8e-09 68.9 261 23.8
Cpa.g.sc119.88 Carica papaya HOM05D000001 ORTHO05D010412 3.0e-09 68.2 262 21.8
Duzib168G1420 Durio zibethinus HOM05D007251 ORTHO05D009266 5.2e-09 67.4 130 32.3
Aqoxy2G03684 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 2.0e-08 65.5 319 22.3
Sc20g0004090 Simmondsia chinensis HOM05D000855 ORTHO05D008530 2.0e-08 65.5 373 21.4
DCAR_009064 Daucus carota HOM05D006106 ORTHO05D007662 2.6e-08 65.1 244 24.6
QL01p017408 Quercus lobata HOM05D000001 ORTHO05D000003 3.4e-08 64.7 318 22.0
AagrBONN_evm.TU.Sc2ySwM_228.5724 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.4e-08 64.3 288 23.3
Gorai.009G067600 Gossypium raimondii HOM05D007251 ORTHO05D009266 5.7e-08 63.9 141 28.4
SMO335G0013 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 5.7e-08 63.9 304 22.7
Ah.10g038020 Amaranthus hybridus HOM05D002007 ORTHO05D000355 7.5e-08 63.5 159 28.9
AagrBONN_evm.TU.Sc2ySwM_368.2803 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.5e-08 63.5 390 21.5
GSVIVG01025536001 Vitis vinifera HOM05D000855 ORTHO05D008530 7.5e-08 63.5 331 21.8
Lalb_Chr02g0153641 Lupinus albus HOM05D000855 ORTHO05D008530 9.8e-08 63.2 189 27.0
Manes.16G135400 Manihot esculenta HOM05D007251 ORTHO05D009266 9.8e-08 63.2 136 31.6
Ciclev10018076m.g Citrus clementina HOM05D000001 ORTHO05D010412 1.7e-07 62.4 255 23.9
Migut.N02383 Erythranthe guttata HOM05D000001 ORTHO05D000003 1.7e-07 62.4 330 23.6
MBI12_g09300_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 2.2e-07 62.0 407 20.9
Aa31LG6G1210 Aethionema arabicum HOM05D000001 ORTHO05D000003 3.7e-07 61.2 316 22.5
Mapoly0059s0080 Marchantia polymorpha HOM05D001779 ORTHO05D023528 3.7e-07 61.2 233 27.0
PSO017G4104 Papaver somniferum HOM05D000001 ORTHO05D000003 3.7e-07 61.2 348 20.4
Zm00001eb156000 Zea mays HOM05D000855 ORTHO05D008530 3.7e-07 61.2 287 22.6
AT5G14350 Arabidopsis thaliana HOM05D006844 ORTHO05D008504 4.8e-07 60.8 160 31.9
Gohir.A05G064200 Gossypium hirsutum HOM05D007251 ORTHO05D009266 4.8e-07 60.8 141 28.4
Gohir.D05G066800 Gossypium hirsutum HOM05D007251 ORTHO05D009266 4.8e-07 60.8 141 27.7
Peaxi162Scf00332g00057 Petunia axillaris HOM05D000001 ORTHO05D000003 4.8e-07 60.8 304 21.4
CSS0035408 Camellia sinensis var. sinensis HOM05D007251 ORTHO05D009266 6.3e-07 60.5 181 27.6
Sabra06G0006100 Salix brachista HOM05D000001 ORTHO05D009494 6.3e-07 60.5 321 21.8
Nn1g02889 Nelumbo nucifera HOM05D000001 ORTHO05D000003 8.3e-07 60.1 324 20.1
Peaxi162Scf00336g00159 Petunia axillaris HOM05D000001 ORTHO05D010412 8.3e-07 60.1 262 24.4
DCAR_009287 Daucus carota HOM05D000855 ORTHO05D008530 1.1e-06 59.7 210 26.2
PSO478G3891 Papaver somniferum HOM05D000001 ORTHO05D000003 1.1e-06 59.7 346 19.9
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 1.4e-06 59.3 229 22.3
VMungo1215G0478 Vigna mungo HOM05D000001 ORTHO05D000003 1.4e-06 59.3 317 22.4
EL10Ac7g17347 Beta vulgaris HOM05D000855 ORTHO05D008530 1.8e-06 58.9 435 20.9
COL.COLO4_19030 Corchorus olitorius HOM05D007251 ORTHO05D009266 1.8e-06 58.9 139 25.2
Eucgr.J00703 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.8e-06 58.9 364 20.9
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 1.8e-06 58.9 206 26.7
Sabra16G0092100 Salix brachista HOM05D000855 ORTHO05D008530 1.8e-06 58.9 229 22.7
DCAR_003849 Daucus carota HOM05D000855 ORTHO05D008530 2.4e-06 58.5 210 26.2
AagrBONN_evm.TU.Sc2ySwM_228.323 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.1e-06 57.8 269 21.6
DCAR_003023 Daucus carota HOM05D007251 ORTHO05D009266 4.1e-06 57.8 125 30.4
Eucgr.L01988 Eucalyptus grandis HOM05D000001 ORTHO05D009432 4.1e-06 57.8 324 20.4
MBI19_g11828_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 4.1e-06 57.8 318 21.7
AagrBONN_evm.TU.Sc2ySwM_362.1914 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.4e-06 57.4 293 22.5
Dinv42389 Davidia involucrata HOM05D000001 ORTHO05D000003 5.4e-06 57.4 272 22.4
Oeu019776.1 Olea europaea HOM05D007251 ORTHO05D009266 5.4e-06 57.4 141 27.0
Sc13g0001690 Simmondsia chinensis HOM05D006106 ORTHO05D007662 5.4e-06 57.4 136 25.0
PGSC0003DMG400017910 Solanum tuberosum HOM05D000001 ORTHO05D010412 5.4e-06 57.4 263 22.4
MSTRG.25618 Avicennia marina HOM05D000001 ORTHO05D000003 7.0e-06 57.0 270 21.1
Ciclev10004576m.g Citrus clementina HOM05D000001 ORTHO05D010150 7.0e-06 57.0 344 22.4
Migut.E01424 Erythranthe guttata HOM05D007251 ORTHO05D009266 7.0e-06 57.0 194 23.7
Thhalv10013072m.g Eutrema salsugineum HOM05D007251 ORTHO05D009266 7.0e-06 57.0 139 27.3
FAN02G3427 Fragaria x ananassa HOM05D000855 ORTHO05D008530 7.0e-06 57.0 94 34.0
PGR142G0989 Punica granatum HOM05D000855 ORTHO05D008530 7.0e-06 57.0 310 21.9
Sopen01g015270 Solanum pennellii HOM05D000001 ORTHO05D010412 7.0e-06 57.0 263 22.1
SGA_v2.0_scaffold55G19723 Striga asiatica HOM05D000001 ORTHO05D000003 7.0e-06 57.0 314 22.6
AagrBONN_evm.TU.Sc2ySwM_228.1071 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.1e-06 56.6 322 23.6
BcaNung04265 Brassica carinata HOM05D000001 ORTHO05D000003 9.1e-06 56.6 273 23.1
Cfa002994 Carpinus fangiana HOM05D000001 ORTHO05D000003 9.1e-06 56.6 319 22.3
Haze_20657 Corylus avellana HOM05D000855 ORTHO05D008530 9.1e-06 56.6 302 22.2
Haze_26008 Corylus avellana HOM05D000001 ORTHO05D000003 9.1e-06 56.6 319 22.6
FAN24G1082 Fragaria x ananassa HOM05D000001 ORTHO05D000003 9.1e-06 56.6 264 22.7


User provided reference genes

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