Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 1.8e-202 709.1 376 100.0
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 2.3e-186 655.6 412 87.9
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 3.0e-170 602.1 361 88.9
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 4.4e-169 598.2 361 89.5
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 8.2e-168 594.0 361 88.9
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 7.0e-167 590.9 361 88.6
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 8.5e-157 557.4 361 85.3
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 5.0e-141 505.0 363 75.5
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 1.3e-136 490.3 364 73.9
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 1.7e-136 490.0 368 73.1
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 5.4e-135 485.0 364 73.4
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 3.5e-134 482.3 365 74.2
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 1.0e-133 480.7 361 72.0
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 5.6e-132 474.9 382 68.8
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 9.5e-132 474.2 381 68.2
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 3.7e-128 462.2 370 70.3
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 5.4e-127 458.4 363 67.8
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 9.2e-127 457.6 364 69.0
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 1.2e-126 457.2 366 67.5
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 1.6e-126 456.8 371 69.3
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 3.5e-126 455.7 365 69.0
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 7.8e-126 454.5 363 69.4
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 3.9e-125 452.2 401 65.3
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 9.5e-124 447.6 362 68.2
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 9.5e-124 447.6 364 68.4
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 1.2e-123 447.2 360 68.3
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 1.6e-123 446.8 360 68.1
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 6.2e-123 444.9 361 67.3
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 1.4e-122 443.7 356 68.3
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.8e-122 443.4 365 67.1
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.8e-122 443.4 378 65.9
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 2.3e-122 443.0 362 66.6
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 6.8e-122 441.4 361 67.0
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 6.8e-122 441.4 361 67.0
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 6.8e-122 441.4 360 67.5
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 8.9e-122 441.0 361 66.2
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 1.5e-121 440.3 360 65.3
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.0e-121 439.9 361 66.5
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 3.4e-121 439.1 363 66.4
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 4.4e-121 438.7 364 65.7
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 4.4e-121 438.7 354 67.2
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 5.8e-121 438.3 363 68.9
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 9.9e-121 437.6 361 66.2
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 9.9e-121 437.6 356 67.1
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 2.2e-120 436.4 377 65.5
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.4e-119 433.7 363 65.3
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.9e-119 433.3 362 66.6
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 7.1e-119 431.4 382 63.6
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.6e-118 430.3 380 63.7
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 1.6e-118 430.3 358 65.4
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 1.6e-118 430.3 364 65.1
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 2.7e-118 429.5 362 65.7
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 6.0e-118 428.3 364 64.8
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 1.0e-117 427.6 363 65.6
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 1.7e-117 426.8 366 65.3
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 1.7e-117 426.8 366 64.2
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 3.9e-117 425.6 366 65.0
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 3.9e-117 425.6 361 65.9
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 3.9e-117 425.6 357 66.7
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 5.1e-117 425.2 366 63.4
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 2.5e-116 422.9 358 64.2
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 9.6e-116 421.0 362 64.1
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 6.2e-115 418.3 363 65.0
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 6.2e-115 418.3 378 64.3
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 1.1e-114 417.5 370 63.2
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 1.4e-114 417.2 357 63.6
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 2.4e-114 416.4 378 63.8
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 3.1e-114 416.0 362 63.3
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 3.1e-114 416.0 358 63.7
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 5.2e-114 415.2 361 63.4
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 9.9e-113 411.0 363 62.5
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 5.4e-111 405.2 363 62.8
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 2.3e-109 399.8 343 65.9
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 5.1e-109 398.7 374 60.4
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 1.9e-108 396.7 358 61.7
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 4.3e-108 395.6 360 62.2
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 1.3e-107 394.0 427 54.8
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 8.1e-107 391.3 363 61.2
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 1.1e-106 391.0 365 62.5
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.5e-105 387.1 374 59.1
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 3.8e-104 382.5 339 63.4
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 4.9e-104 382.1 363 61.7
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 4.9e-104 382.1 363 61.7
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 5.4e-103 378.6 361 62.6
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 9.3e-103 377.9 231 86.1
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 2.3e-101 373.2 385 57.1
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.5e-100 369.8 368 60.3
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 4.3e-100 369.0 364 56.9
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 3.6e-99 365.9 344 59.6
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 8.1e-99 364.8 361 58.7
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 3.1e-98 362.8 361 57.1
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 9.0e-98 361.3 361 57.6
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 2.0e-97 360.1 386 54.1
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 4.5e-97 359.0 379 55.7
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 6.4e-96 355.1 374 55.3
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 1.1e-95 354.4 362 57.2
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 1.4e-95 354.0 366 56.8
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 2.4e-95 353.2 365 54.5
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 2.4e-95 353.2 367 54.0
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 3.2e-95 352.8 366 54.4
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 6.0e-94 348.6 430 49.5
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.4e-90 337.4 364 58.0
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 3.1e-90 336.3 378 54.0
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 1.2e-89 334.3 377 54.1
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 1.2e-89 334.3 378 52.6
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 1.5e-89 334.0 356 56.2
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 2.0e-89 333.6 378 52.6
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 4.3e-84 315.8 378 51.1
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 9.6e-84 314.7 378 50.8
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 2.8e-83 313.2 376 51.9
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 2.8e-83 313.2 376 51.9
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 3.1e-82 309.7 376 51.6
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 4.5e-81 305.8 372 51.3
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 1.1e-79 301.2 376 50.3
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 1.8e-77 293.9 237 69.2
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 2.1e-70 270.4 307 53.1
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 3.0e-69 266.5 390 42.3
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 1.8e-66 257.3 356 45.8
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.4e-61 241.1 290 49.7
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.3e-59 234.6 187 66.3
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 2.9e-56 223.4 356 41.0
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 6.5e-56 222.2 439 37.6
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 4.7e-54 216.1 156 76.3
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 4.0e-53 213.0 130 89.2
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 6.3e-51 205.7 258 48.4
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 2.9e-48 196.8 225 52.0
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 3.6e-46 189.9 355 36.9
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 2.4e-42 177.2 121 77.7
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 3.4e-20 103.6 420 26.2
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 4.1e-18 96.7 398 26.6
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 3.5e-17 93.6 102 52.0
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 4.6e-17 93.2 56 80.4
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.0e-16 92.0 117 51.3
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 3.0e-16 90.5 62 66.1
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 6.2e-14 82.8 56 69.6
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 2.6e-12 77.4 518 23.7
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 3.4e-12 77.0 50 74.0
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 2.7e-09 67.4 60 65.0
Cfa025636 Carpinus fangiana HOM05D002744 ORTHO05D006546 3.0e-08 63.9 415 24.6
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 3.9e-08 63.5 61 63.9
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 1.1e-07 62.0 61 62.3
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 2.5e-07 60.8 59 62.7
Sopen06g016500 Solanum pennellii HOM05D002744 ORTHO05D006546 5.6e-07 59.7 46 73.9


User provided reference genes

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